AUTHOR=Zhang Xiehua , He Yuchao , Ren Peiqi , Chen Lu , Han Zhiqiang , Qi Lisha , Chen Liwei , Luo Yi , Zhang Ning , Lu Wei , Guo Hua 

TITLE=Low expression and Hypermethylation of ATP2B1 in Intrahepatic Cholangiocarcinoma Correlated With Cold Tumor Microenvironment

JOURNAL=Frontiers in Oncology

VOLUME=12

YEAR=2022

URL=https://www.frontiersin.org/journals/oncology/articles/10.3389/fonc.2022.927298

DOI=10.3389/fonc.2022.927298

ISSN=2234-943X

ABSTRACT=<sec><title>Background</title><p>The efficacy of current therapeutic schedule is limited owing to fibroproliferative tumor microenvironment (TME) of cholangiocarcinoma, compelling a search for new therapeutic targets.</p></sec><sec><title>Methods</title><p>Gene expression profiles and methylation profiles were obtained from UCSC Xena. Consensus clustering was performed on the transcriptome data of cholangiocarcinoma to determine the different immune subtypes. The differentially expressed genes (DEGs) between hot tumor and cold tumors were identified. ESTIMATE was used to assess immune score, and the cases were separated into relatively superior and inferior immune score groups. Single-sample gene set enrichment analysis was applied to assess 28 immune cells in the cholangiocarcinoma microenvironment. Unsupervised consensus was applied for methylation profiling to distribute the high and low methylation groups. The correlation between DNA methylation and mRNA expression was investigated, and the relationship between the <italic>ATP2B1</italic> gene and the immune microenvironment was explored. Finally, 77 cases of intrahepatic cholangiocarcinoma (ICC) were collected for verification.</p></sec><sec><title>Results</title><p>Seven subtypes were related to patient outcomes (<italic>P</italic>=0.005). The proportions of CD8<sup>+</sup> T cells in the “hot” immune type was significantly greater than that in the “cold” immune type (<italic>P</italic>&lt;0.05). Next, DEGs and DNA methylation-governed genes were intersected, and <italic>ATP2B1</italic> was identified as a prognosis factor in ICC (<italic>P</italic>=0.035). ATP2B1 expression was positively correlated with immune scores (<italic>P</italic>=0.005, r=0.458), the levels of infiltrating CD8<sup>+</sup> T cells (<italic>P</italic>=0.004, r=0.47), and CD4<sup>+</sup> T cells (<italic>P</italic>=0.027, r=0.37). Immunohistochemistry confirmed that the amounts of CD8<sup>+</sup> and CD4<sup>+</sup> T cells were significantly higher in ICC tissue samples than in tissues with ATP2B1 overexpression (<italic>P</italic>&lt;0.05).</p></sec><sec><title>Conclusions</title><p>ATP2B1 overexpression can activate immune signals and prompt cold tumor response.</p></sec>