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MINI REVIEW article
Front. Oncol. , 26 October 2021
Sec. Pharmacology of Anti-Cancer Drugs
Volume 11 - 2021 | https://doi.org/10.3389/fonc.2021.747022
A large number of studies have revealed that epigenetics plays an important role in cancer development. However, the currently-developed epigenetic drugs cannot achieve a stable curative effect. Thus, it may be necessary to redefine the role of epigenetics in cancer development. It has been shown that embryonic development and tumor development share significant similarities in terms of biological behavior and molecular expression patterns, and epigenetics may be the link between them. Cell differentiation is likely a manifestation of epigenetic homeostasis at the cellular level. In this article, we introduced the importance of epigenetic homeostasis in cancer development and analyzed the shortcomings of current epigenetic treatment regimens. Understanding the dynamic process of epigenetic homeostasis in organ development can help us characterize cancer according to its differentiation stages, explore new targets for cancer treatment, and improve the clinical prognosis of patients with cancer.
As a common disease in multicellular organisms, cancer has always been the focus of scientific research, especially in its pathogenesis (1–4). An increasing number of studies have revealed that epigenetics plays an important role in cancer development. However, existing drugs targeting tumor epigenetics have not achieved stable long-term curative effects. Perhaps we need to rethink the role of epigenetics in cancer development.
In this article, we will refer to existing research to analyze the shortcomings of current epigenetic treatment regimens and review our view: Epigenetic homeostasis refers to the fact that various epigenetic regulatory substances in cells change only in a small range under normal physiological conditions to jointly maintain cell differentiation. Cell differentiation is the manifestation of epigenetic homeostasis at the cellular level, and attention to epigenetic homeostasis may be more important than to level of genome-wide methylation or acetylation. While explaining the important role of epigenetic homeostasis in multicellular organism, the term ‘differentiation lock’ will be used to refer to the composition of epigenetics in cell differentiation. Exploring the dynamic changes in the differentiation lock during organ development may contribute to changing our understanding of cancer and exploring new targets for the epigenetic homeostasis.
Several studies have revealed that epigenetics plays an important role in the development of cancer and drug resistance (5), which has stimulated the enthusiasm of researchers (Table 1). Current studies mainly focus on histone codes, methyl compounds, and non-coding RNAs (ncRNAs), and related drugs are being developed.
The nucleosome is the basic chromatin repeating unit, and the core histones that make up the nucleosome are small proteins. Histone modifications mainly include acetylation, methylation, and ubiquitination, and the histone modification state controls whether the transcription complex can come into close proximity with the target gene, affecting its expression activity (25–27). The quantity, position, and type of histone modifications are collectively referred to as histone codes, which play an important role in cell differentiation and maintenance (28–30). Studies have shown that abnormal expression of histone codes is an important feature of cancer tissues and is related to the heterogeneity of cancer cells (31, 32). Studies have shown that abnormal levels of the histone demethylases, KDM6A and KDM6B, are associated with pediatric acute myeloid leukemia (AML) (33). Moreover, modification of the histone proteins H3K9ac, H3K27ac, and H4K16ac plays an important role in the progression and prognosis of head and neck squamous cell carcinoma (HNSCC) (34).
DNA methylation widely exists in prokaryotes and eukaryotes and is an epigenetic mechanism controlling gene expression (35, 36). Previous studies have revealed epigenetic reprogramming during embryo development (5, 37, 38). With cell differentiation, new methylation patterns are formed to ensure the specific expression of genes in organisms (39, 40). DNA methylation is catalyzed by methyltransferases, including DNMT1, DNMT3A, and DNMT3B (41). Among these enzymes, DNMT1 is responsible for the transmission of methylation patterns during mitosis to prevent passive demethylation. Dysplasia and death have been observed in DNMT1 knockout mice (42). DNMT3A and DNMT3B can methylate unmethylated CpG sites, which is important for embryonic development and tumorigenesis (43, 44). Methylation of cytosine residues leads to gene silencing, which plays a key role in the proper regulation of gene expression, genomic imprinting, X-inactivation, and development. Interestingly, abnormal DNA methylation is often observed in clinical specimens of cancer tissues (45). During tumorigenesis, abnormally high methylation of cytosines in promoter CpG islands, as well as overall gene hypomethylation, lead to genome-wide instability and altered gene expression profiles, including silencing of oncogenes, activation of endogenous retroviruses, and upregulation of tumor antigens and oncogene expression (46, 47). Tumor-specific methylated genes can be detected in circulating tumor cells, blood, urine, and other body fluids and are therefore commonly used in the diagnosis and prognosis of early-stage tumors (48, 49).
Non-coding RNAs (ncRNAs), which are not involved in protein-coding, mainly include microRNAs (miRNAs), circular RNAs (circRNAs), ribosomal RNAs (rRNAs), transfer RNAs (tRNAs), small nuclear RNAs (snRNAs), and small nucleolar RNAs (snoRNAs) (50–52). ncRNAs mainly affect gene expression at the transcriptional and translational levels, and play an indispensable role in embryonic development, cell differentiation, damage repair, and regulation of cell function (53–55). Dicer1 is one of the most important enzymes that produce miRNAs. It has been reported that Dicer1-deficient mice have abnormal organ development or face embryonic death, which was attributed to the failure of embryos to correctly process miRNAs (56). Abnormal ncRNAs have been reported to play an important role in tumorigenesis, metastasis, and drug resistance (51, 52, 57). For instance, miRNA-143 regulates a variety of signaling pathways, including WNT/β-catenin, RAS-MAPK, and PI3K/AKT, thereby affecting tumor growth (58). miR-193a-5p promotes tumor cell metastasis by regulating the EMT signaling pathway (59). Furthermore, both germline and somatic mutations in Dicer1 have been identified in diverse types of cancer (60, 61). The errors in ncRNAs are closely related to cancer. However, the exact mechanism is still surprisingly controversial. This may be related to the complexity of the ncRNA regulatory mechanism.
A wide range of therapeutic strategies in cancer treatment are compared to conventional chemotherapeutic agents that target cell proliferation. Currently, epigenetic drugs are being progressively developed and used for cancer treatment (62), such as DNA methyltransferase inhibitors (DNMTi) and histone deacetylase inhibitors (HDACi).
By inhibiting the activity of DNMTs, the expression of tumor suppressor genes is promoted to inhibit the growth of tumor cells. The main nucleoside and non-nucleoside DNMT inhibitors (DNMTis) include azacitidine (AZA) and decita21bine (63). Azacitidine blocks cytosine methylation by noncompetitive inhibition of DNMT1, resulting in the depletion of methyltransferases and DNA hypomethylation, but it is ineffective for quiescent cells that cannot divide (64). Low-dose azacitidine and decitabin can induce reactivation of the genes that were previously silenced by methylation, thereby inducing the formation of new phenotypes, reducing proliferation, and increasing apoptosis of offspring cells. High-dose drugs have cytotoxic effects and can directly cause tumor cell death (65, 66). Azacitidine and decitabin are approved by the Food and Drug Administration (FDA) as first-line drugs for the treatment of myelodysplastic syndromes (MDS) and leukemia. However, these drugs did not show significant efficacy in solid tumors such as gastrointestinal cancer, lung cancer, breast cancer, and melanoma, and their use was limited due to their side effects and drug instability (67, 68). Dniunaite (69) observed that downregulation of miR-155-5p was significantly correlated with promoter methylation in prostate cancer. DOT1L inhibitors SYC-52221 and EPZ004777 inhibited DNMT3A-mutant cell proliferation, inducing cell cycle arrest and terminal differentiation (70).
HDAC is a highly conserved group of enzymes that removes acetyl groups from the tail of histone lysine. HDAC promotes chromatin closure and inhibits gene transcription by deacetylating histones (71). HDACi is a new antitumor drug that regulates gene expression. It has extensive effects on malignant tumors, including inhibition of cell differentiation, cell cycle growth, and angiogenesis, as well as induction of apoptosis, and immune regulation (72). In animal models, HDAC inhibition was found to inhibit tumor growth and reduce malignant proliferation by downregulating positive cell cycle regulators, such as cell cycle proteins D1, c-Myc, and AKT (73, 74).
Currently, vorinostat and romidepsin are approved for the treatment of skin T-cell lymphoma (75). However, these drugs do not achieve long-term stable efficacy (76–78). This is not only related to low drug stability and high toxicity, but also to abnormal pathway activation. Abnormal activation of the PI3K/AKT, MEK/ERK, and FAK signaling pathways has been observed in the treatment of multiple myeloma with HDACi (79, 80). 5−aza−2’-deoxycytidine promotes migration of acute monocytic leukemia cells via activation of the CCL2/CCR2/ERK signaling pathway (81).
Since the drugs target DNA methyltransferase and histone deacetylase, those non-specific alteration of cancer cell methylation and acetylation levels cannot inhibit the development of cancer. In contrast, epigenetics may form complex networks in cells, thereby affecting other genes and signaling pathways, that may be an important reason for the existing epigenetic drug resistance. According to the epigenetic landscape theory (82), it is believed that cell differentiation is a manifestation of epigenetic homeostasis. In other words, targeting epigenetic homeostasis at the molecular level is the future direction of epigenetic treatment for cancer.
In this section, we describe the normal differentiation process, which helps us to further understand the causes of drug resistance in tumor epigenetics and possible future research directions from the perspective of cell differentiation.
The essence of cell differentiation is the expression combination of genes (83). According to classical epigenetic landscape theory, for cells in a certain period, the gene expression profile may maintain dynamic stability (84). This may be attributed to epigenetic homeostasis. Blanca Pijuan-Sala report the transcriptional profiles of single cells from mouse embryos (85), thus portraying the early differentiation trajectory of the mouse embryo and the altered stages of epigenetics in cell differentiation. To characterize epigenetic stage changes, we introduced the concept of differentiation locks and classified differentiation locks into standard differentiation locks (SDLs), epistatic differentiation locks (EDLs) and hypostatic differentiation locks (HDLs) according to the stage cells are in. (Figure 1). Changes in epigenetic homeostasis in the cell differentiation pathway have been a hot topic of research. The mouse embryonic hindgut 1-specific genes Trap1a and Rhox5 were also found to be expressed in the ExE endoderm and ExE ectoderm, consistent with the extra-embryonic origin of hindgut 1, suggesting that differentiation locks present different stages in cell differentiation during embryonic development, while the SDLs may inherit some or all of the EDLs (85). Equally important, differentiation lock may be changed, updated during cell division and differentiation to complete the entire differentiation process (86–89). The Human Developmental Cell Atlas (HDCA) is a great human project whose goal is to determine the expression profiles of different human cells and to typify cell differentiation accordingly (90). The theoretical basis of this program is different tissues have distinct differentiation locks, and the same tissues hold similar differentiation locks, thus forming the specificity of tissues and organs and ensuring the normal operation of human functions. The completion of HDCA will help us to deepen our understanding of epigenetic changes during cell differentiation, and will also have a profound impact on the treatment of congenital diseases, cancer and other diseases.
Figure 1 The differentiation locks in cell differentiation. A coordinated gamete and embryo epigenetic reprogramming can eliminate the epigenetic markers carried by their parents, reverse and restore to the state of totipotency, which is the condition of post-fertilization differentiation. Differentiation lock is the composition of epigenetics in cell differentiation The existence of differentiation lock is crucial to maintain the irreversible state of differentiation. The formation of differentiation locks is dependent on intercellular signaling and cell-mesenchymal interactions. The differentiation locks that maintain the state-specific modifications of a cell are called the standard differentiation locks (SDLs), those that maintain the modifications of the previous stage are called the epistatic differentiation locks (EDLs), and the differentiation locks that maintain the modifications of the next stage are called the hypostatic differentiation locks (HDLs). The SDLs may contain parts or all of the EDL modifications. Differentiation locks that do not exist in a cell’s own differentiation path are collectively called ectopic differentiation locks (EcDLs). Differentiation locks replicate, inherit, and develop during the differentiation and division of cells.
With the progress in developmental biology, a large number of studies have revealed that early embryonic development and carcinogenesis have great similarities in biological characteristics such as migration and invasion (91), gene expression and protein spectrum (92), signal pathways (93), cell differentiation (94), and energy metabolism mechanisms (95). Epigenetics has attracted considerable attention as a key cause of these similarities.
Why do mature tissues have biological characteristics similar to those of embryos when transformed into cancer? Daughter cells with defective differentiation lock in their own differentiation path transform into cancer cells during stem cell division. Any factor that can promote the proliferation of stem cells is a promoting factor for cancer. Because the environment forming the ectopic differentiation locks (EcDLs) has changed, cancer cells can no longer differentiate correctly and undergo multidirectional differentiation, resulting in cancer heterogeneity (96).
Study have reported the C2H2 zinc finger transcription factor B cell CLL/lymphoma 11A (Bcl11a) is essential for lymphoid development. The deletion of Bcl11a prevents further development of hematopoietic stem cells (HSCs) into lymphocytes (97). Bcl11a-/- HSC alters cell cycle progression. A general upregulation of cell cycle protein genes and a downregulation of the quiescent regulator Cdkn1c (p57) and G2/M markers such as Prc1, Plk1 and Mki67 (Ki-67) of Bcl11a-/- HSC can be observed, and cells eventually appear to proliferate uncontrollably (98, 99).。Similar results can be found in the corresponding studies: DNMTi can inhibit the further differentiation of bone marrow mesenchymal stem cells into osteoblasts and chondrocytes. At the same time, the expression of the anti-senescence genes (TERT, bFGF), and the anti-apoptosis gene (BCL2) was up-regulated and the expression of the apoptotic gene (BAX) was down-regulated (100, 101). The above studies illustrate that cells fail to complete differentiation to form a differentiation lock, i.e., they do not reach epigenetic homeostasis and are transformed into cancer cells. Some mutations in tumor suppressor genes can lead to damaged DNA repair function, such as the BRCA1/2 and P53, and differentiation locks are more likely to be damaged since the gene coding sequences only account for a small proportion of their genome (102, 103). The current research may indirectly confirm our opinion that cancer is a population of cells without epigenetic homeostasis. The non-coding RNA and protein profiles of cancer cells are quite different from those of normal cells, which is also a consequence of the imbalance in epigenetic homeostasis and is often manifested as cell differentiation disorder and cellular dedifferentiation (104, 105).
The consequences of epigenetic modifications may differ according to their position in the differentiation lock. Invisible damage may occur as a result of the defects in EcDL. Cell maturation arrest caused by defective hypostatic differentiation locks (HDLs) results in cancer cell transformation under the continuous stimulation of proliferation signals. Cells with defective standard differentiation locks (SDLs) dedifferentiate and transform into cancer during proliferation, and the invisible damage may become exposed. The invisible damages may explain why the mutation frequency of oncogenes and anti-oncogenes in the human population is much higher than the incidence of cancer (106–109). A possible reason is that tissue-specific alterations in differentiation locks, and defective EcDLs may not impose an effect on the process of tissue carcinogenesis.
Any factor, including physical, chemical, and biological factors, that can damage cells may lead to differentiation lock defects, thereby increasing the incidence of cancer (110–112).
In life, a variety of damages and stresses are often met. Mild damage and stress are often dealt with by the asymmetric division of stem cells. When stress exceeds tissue tolerance, stem cells must deal with symmetric divisions (113, 114).
When the cells are asymmetrically divided, the HDL defect (if exists) will lead to the maturation arrest of the daughter cells. These cells cannot complete the next stage of differentiation, and some of the daughter cells die. However, some daughter cells survive and transform into cancer cells under the stimulation of a continuous proliferation signal. When the stem cells are symmetrically divided, the defects of the SDLs are exposed (if exists). As a result, stem cells are dedifferentiated to transform into cancer cells (115). Cell carcinogenesis is a gradual process, and epigenetic homeostasis has a certain tolerance to damage. DNMT1 mainly maintains DNA methylation pattern during DNA replication, ensuring that the pattern is inherited by the offspring. In the early stages, defects in DNMT1 may be related to the accumulation of cell mutations. When the damage exceeds the steady-state tolerance, the cells become cancerous, which may be the internal relationship between aging and cancer.
Therefore, any pressure to stimulate stem cell division can increase the possibility of defective differentiation lock exposure, including injury, infection, and chronic inflammation (116–119).
As discussed above, the essence of tumor is cells that cannot form epigenetic homeostasis. The correct differentiation process depends on information transmission between cells and the interaction between cells and stroma (120, 121). The environment required for normal development has disappeared, and cancer cells cannot form the correct differentiation lock. Dr. Tushar reported bone marrow microenvironment lead to β-catenin activation and disease progression of MDS (122). Just like without the help of molecular chaperones, peptide chains cannot form proteins properly. Under internal gene-driven and error-induced environments, cancer cells produce heterogeneous daughter cancer cells (123, 124).
Numerous studies comparing gene expression in tumor tissues with paracancerous tissues have found that a large number of genes normally silenced during cell differentiation were activated in cancer. Moreover, these differences in gene expression patterns correlated with the malignancy of the tumor (125, 126). Those studies suggest that epigenetic homeostasis makes a crucial contribution to malignancy.
The more distinct the defective EDLs from SDLs, the lower the differentiation degree of cells, and the more apparent the characteristics of malignant tumors are (127–129), and vice versa. With the further cancer development, the differentiation locks in the upper layer will change, and the cells will show the characteristics of a lower differentiation stage. At this point, cancer tissues show typical malignant tumor characteristics (130, 131).(Figure 2) In the late stage of cancer development, some or all genes that had been closed in the embryonic stages are open.
Figure 2 Role of defective differentiation lock in cancer development. A cell can be damaged by physical, chemical, biological and other factors. Depending on the site of damage, there may be different consequences. In the process of cell carcinogenesis, the occurrence of a defective differentiation lock in the differentiation path is the turning point of cell fate. Any factors that promote division, such as chronic inflammation, injury, and infection, will increase the probability of a defective differentiation lock, thereby accelerating the occurrence of cancer. Meanwhile, due to the following two reasons, cancer cells are heterogeneous: 1) the cells cannot complete their differentiation path due to the defects in self-differentiation lock, 2) without correct development environment, ectopic differentiation lock cannot be formed.
At present, there are two kinds of tumor treatment strategies for epigenetic homeostasis: 1. Destroy epigenetic homeostasis, thereby inducing apoptosis of tumor cells, strengthening immunogenicity and weakening drug resistance. 2. Reestablish new epigenetic homeostasis to transdifferentiate tumor cells. At present, the two treatment strategies are still in the preclinical stage or clinical trial stage, but they have shown exciting therapeutic prospects.
Epigenetic abnormalities in tumor cells have always been of interest to scientists and physicians. Scholars have found that epigenetically abnormal tumor cells often show apoptosis, which may be a target for tumor therapy. Destruction of epigenetic homeostasis can induce apoptosis of cancer cells. Existing studies have found that cisplatin can not only directly kill cancer by DNA crosslinking, but also induce epigenetic changes of cancer cells and further induce apoptosis of cancer cells (132). Destruction of epigenetic homeostasis may enhance cancer immunogenicity. Researchers have found that inhibition of the histone demethylase LSD1 enhances tumor immunogenicity and T-cell infiltration in tumors. Thus, LSD1 could be used as an anti-tumor immunosuppressant in combination with anti-PD-1 immunotherapy for tumor treatment, with encouraging results in small-scale clinical trials (133, 134). Disruption of epigenetic homeostasis may alter the drug resistance of tumor cells. Methylguanine methyltransferase (MGMT), which repairs temozolomide (TMZ)-induced O6-methylguanine (O6mG) adducts, induces drug resistance in tumor cells. New study has shown reduced production of MGMT in the presence of epigenetic instability, demonstrating that generating epigenetic instability through destruction of epigenetic homeostasis may be a viable strategy to mitigate anticancer drug resistance (135). The above studies are all based on the biological effects generated after the destruction of epigenetic homeostasis to kill tumor cells, which are the current research hotspots.
As mentioned above, imbalance of epigenetic homeostasis may be the etiology of tumors. Some scholars believe that by re-establishing epigenetic homeostasis may be a new strategy for cancer treatment. Surprisingly, some studies have reported that breast cancer cells can be terminally differentiated into adipocytes by using the rosiglitazone combined with the trametinib (136, 137). This exciting finding suggests that re-establishing epigenetic homeostasis, i.e., tumor cell transdifferentiation, may be the therapeutic direction for cancer. After transdifferentiation, tumor cells are transformed into new, solid, controlled cells, and patients may achieve durable, stable remission as a result. This fascinating therapeutic prospect has attracted the attention of scientists. However, the lack of understanding of human cell differentiation pathways and differentiation-inducing conditions continues to limit the development of cancer transdifferentiation therapies.
Epigenetic changes may occur gradually during cell development. At a specific stage, the composition of epigenetics is stable and maintains the corresponding state of cell differentiation, which is the role of differentiation lock. As discussed above, tumors are cells without epigenetic homeostasis. Existing epigenetic drugs alter the epigenetic status of cancer cells to kill these cells through several pathways. Unfortunately, these drugs have also led to serious adverse effects. In addition, maintaining the low methylation level of cancer cells inevitably leads to the activation of multiple signaling pathways, which is one of the reasons for the consequent emergence of resistance to epigenetic drugs.
With the above discussion, epigenetic homeostasis treatment strategies for tumors may be divided into disruption and reestablishment of epigenetic homeostasis. The biological effects generated by the destruction of epigenetic homeostasis can effectively kill tumors. Reestablishing epigenetic homeostasis may be the focus of future development. Patients achieve long-lasting remission through tumor cell transdifferentiation. To achieve this goal, the following efforts are required: 1) mapping of the differentiation lock changes that arise during cell development to characterize cancer cells, 2) characterization of the induction conditions for differentiation lock to induce cancer cell transdifferentiation. These may require further collaboration between cancer and embryonic development researchers. Understanding the significance of differentiation lock in the organ differentiation process is helpful for developing more effective targeted therapy strategies and implementing individualized treatment for cancer patients by inducing cancer cell transdifferentiation. This measure can be used to improve the prognosis of patients with cancer.
All authors have read this manuscript and would like to have it considered exclusively for publication in Frontiers in Oncology.
This work was supported by the Natural Science Foundation of China [grant numbers: 81703016] and Hospital Fund of Shanxi Bethune Hospital[grant numbers: 2020ZL02].
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.
We thank the Dr. Raquel Montenegro and anonymous reviewers who helped to improve the paper.
1. Muller AWJ. Cancer is an Adaptation That Selects in Animals Against Energy Dissipation. Med Hypotheses (2017) 104:104–15. doi: 10.1016/j.mehy.2017.05.030
2. Montalban-Arques A, Scharl M. Intestinal Microbiota and Colorectal Carcinoma: Implications for Pathogenesis. Diagn Ther EBioMed (2019) 48:648–55. doi: 10.1016/j.ebiom.2019.09.050
3. Curtius K, Wright NA, Graham TA. An Evolutionary Perspective on Field Cancerization, Nature Reviews. Cancer (2018) 18:19–32. doi: 10.1038/nrc.2017.102
4. DeBerardinis RJ, Chandel NS. Fundamentals of Cancer Metabolism. Sci Adv (2016) 2:e1600200. doi: 10.1126/sciadv.1600200
5. Ming H, Sun J, Pasquariello R, Gatenby L, Herrick JR, Yuan Y, et al. The Landscape of Accessible Chromatin in Bovine Oocytes and Early Embryos. Epigenetics (2021) 16:300–12. doi: 10.1080/15592294.2020.1795602
6. Ponomaryova AA, Rykova EY, Gervas PA, Cherdyntseva NV, Mamedov IZ, Azhikina TL. Aberrant Methylation of LINE-1 Transposable Elements: A Search for Cancer Biomarkers. Cells (2020) 9. doi: 10.3390/cells9092017
7. Rodic N. LINE-1 Activity and Regulation in Cancer. Front Biosci (Landmark edition) (2018) 23:1680–6. doi: 10.2741/4666
8. Johnstone SE, Reyes A, Qi Y, Adriaens C, Hegazi E, Pelka K, et al. Large-Scale Topological Changes Restrain Malignant Progression in Colorectal Cancer. Cell (2020) 182:1474–89.e1423. doi: 10.1016/j.cell.2020.07.030
9. Holm K, Staaf J, Lauss M, Aine M, Lindgren D, Bendahl PO, et al. An Integrated Genomics Analysis of Epigenetic Subtypes in Human Breast Tumors Links DNA Methylation Patterns to Chromatin States in Normal Mammary Cells. Breast Cancer Res BCR (2016) 18:27. doi: 10.1186/s13058-016-0685-5
10. Biswas S, Rao CM. Epigenetics in Cancer: Fundamentals and Beyond. Pharmacol Ther (2017) 173:118–34. doi: 10.1016/j.pharmthera.2017.02.011
11. Wu HJ, Chu PY. Epigenetic Regulation of Breast Cancer Stem Cells Contributing to Carcinogenesis and Therapeutic Implications. Int J Mol Sci (2021) 22. doi: 10.3390/ijms22158113
12. Sun K, Du Y, Hou Y, Zhao M, Li J, Du Y, et al. Saikosaponin D Exhibits Anti-Leukemic Activity by Targeting FTO/M(6)A Signaling. Theranostics (2021) 11:5831–46. doi: 10.7150/thno.55574
13. Huang Y, Su R, Sheng Y, Dong L, Dong Z, Xu H, et al. Small-Molecule Targeting of Oncogenic FTO Demethylase in Acute Myeloid Leukemia. Cancer Cell (2019) 35:677–91.e610. doi: 10.1016/j.ccell.2019.03.006
14. Guo X, Li K, Jiang W, Hu Y, Xiao W, Huang Y, et al. RNA Demethylase ALKBH5 Prevents Pancreatic Cancer Progression by Posttranscriptional Activation of PER1 in an M6a-YTHDF2-Dependent Manner. Mol Cancer (2020) 19:91. doi: 10.1186/s12943-020-01158-w
15. Chen Y, Zhao Y, Chen J, Peng C, Zhang Y, Tong R, et al. ALKBH5 Suppresses Malignancy of Hepatocellular Carcinoma via M(6)A-Guided Epigenetic Inhibition of LYPD1. Mol Cancer (2020) 19:123. doi: 10.1186/s12943-020-01239-w
16. Zhuang J, Huo Q, Yang F, Xie N. Perspectives on the Role of Histone Modification in Breast Cancer Progression and the Advanced Technological Tools to Study Epigenetic Determinants of Metastasis. Front Genet (2020) 11:603552. doi: 10.3389/fgene.2020.603552
17. Regazzo G, Terrenato I, Spagnuolo M, Carosi M, Cognetti G, Cicchillitti L, et al. A Restricted Signature of Serum miRNAs Distinguishes Glioblastoma From Lower Grade Gliomas. J Exp Clin Cancer Res CR (2016) 35:124. doi: 10.1186/s13046-016-0393-0
18. Kan LK, Drummond K, Hunn M, Williams D, O'Brien TJ, Monif M. Potential Biomarkers and Challenges in Glioma Diagnosis, Therapy and Prognosis. BMJ Neurol Open (2020) 2:e000069. doi: 10.1136/bmjno-2020-000069
19. Wang Y, Zeng G, Jiang Y. The Emerging Roles of miR-125b in Cancers. Cancer Manage Res (2020) 12:1079–88. doi: 10.2147/cmar.S232388
20. Su ZH, Liao HH, Lu KE, Chi Z, Qiu ZQ, Jiang JM, et al. Hypoxia-Responsive miR-346 Promotes Proliferation, Migration, and Invasion of Renal Cell Carcinoma Cells via Targeting NDRG2. Neoplasma (2020) 67:1002–11. doi: 10.4149/neo_2020_190917N915
21. Zhu P, Wang Y, Huang G, Ye B, Liu B, Wu J, et al. Lnc-β-Catm Elicits EZH2-Dependent β-Catenin Stabilization and Sustains Liver CSC Self-Renewal. Nat Struct Mol Biol (2016) 23:631–9. doi: 10.1038/nsmb.3235
22. Zhu P, Wang Y, Wu J, Huang G, Liu B, Ye B, et al. LncBRM Initiates YAP1 Signalling Activation to Drive Self-Renewal of Liver Cancer Stem Cells. Nat Commun (2016) 7:13608. doi: 10.1038/ncomms13608
23. Yang F, Hu A, Guo Y, Wang J, Li D, Wang X, et al. P113 Isoform Encoded by CUX1 Circular RNA Drives Tumor Progression via Facilitating ZRF1/BRD4 Transactivation. Mol Cancer (2021) 20:123. doi: 10.1186/s12943-021-01421-8
24. Sun K, Wang D, Yang BB, Ma J. The Emerging Functions of Circular RNAs in Bladder Cancer. Cancers (2021) 13. doi: 10.3390/cancers13184618
25. Wang W, Meng ZQ, Shi FX. Modification and Biological Role of Histone. Yi Chuan = Hereditas (2012) 34:810–8. doi: 10.3724/sp.j.1005.2012.00810
26. Pradeepa MM. Causal Role of Histone Acetylations in Enhancer Function. Transcription (2017) 8:40–7. doi: 10.1080/21541264.2016.1253529
27. Schneider J, Shilatifard A. Histone Demethylation by Hydroxylation: Chemistry in Action. ACS Chem Biol (2006) 1:75–81. doi: 10.1021/cb600030b
28. Orsi GA, Couble P, Loppin B. Epigenetic and Replacement Roles of Histone Variant H3.3 in Reproduction and Development. Int J Dev Biol (2009) 53:231–43. doi: 10.1387/ijdb.082653go
29. Villaseñor R, Baubec T. Regulatory Mechanisms Governing Chromatin Organization and Function. Curr Opin Cell Biol (2020) 70:10–7. doi: 10.1016/j.ceb.2020.10.015
30. Fyodorov DV, Zhou BR, Skoultchi AI, Bai Y. Emerging Roles of Linker Histones in Regulating Chromatin Structure and Function, Nature Reviews. Mol Cell Biol (2018) 19:192–206. doi: 10.1038/nrm.2017.94
31. Scaffidi P. Histone H1 Alterations in Cancer. Biochim Biophys Acta (2016) 1859:533–9. doi: 10.1016/j.bbagrm.2015.09.008
32. Füllgrabe J, Kavanagh E, Joseph B. Histone Onco-Modifications. Oncogene (2011) 30:3391–403. doi: 10.1038/onc.2011.121
33. Jones L, McCarthy P, Bond J. Epigenetics of Paediatric Acute Myeloid Leukaemia. Br J Haematol (2020) 188:63–76. doi: 10.1111/bjh.16361
34. Gaździcka J, Gołąbek K, Strzelczyk JK, Ostrowska Z. Epigenetic Modifications in Head and Neck Cancer. Biochem Genet (2020) 58:213–44. doi: 10.1007/s10528-019-09941-1
35. Bartels A, Han Q, Nair P, Stacey L, Gaynier H, Mosley M, et al. Dynamic DNA Methylation in Plant Growth and Development. Int J Mol Sci (2018) 19. doi: 10.3390/ijms19072144
36. Law PP, Holland ML. DNA Methylation at the Crossroads of Gene and Environment Interactions. Essays Biochem (2019) 63:717–26. doi: 10.1042/ebc20190031
37. Kalkan T, Olova N, Roode M, Mulas C, Lee HJ, Nett I, et al. Tracking the Embryonic Stem Cell Transition From Ground State Pluripotency. Dev (Cambridge England) (2017) 144:1221–34. doi: 10.1242/dev.142711
38. Iurlaro M, von Meyenn F, Reik W. DNA Methylation Homeostasis in Human and Mouse Development. Curr Opin Genet Dev (2017) 43:101–9. doi: 10.1016/j.gde.2017.02.003
39. Canon E, Jouneau L, Blachère T, Peynot N, Daniel N, Boulanger L, et al. Progressive Methylation of POU5F1 Regulatory Regions During Blastocyst Development. Reprod (Cambridge England) (2018) 156:145–61. doi: 10.1530/rep-17-0689
40. Ikegami K, Ohgane J, Tanaka S, Yagi S, Shiota K. Interplay Between DNA Methylation, Histone Modification and Chromatin Remodeling in Stem Cells and During Development. Int J Dev Biol (2009) 53:203–14. doi: 10.1387/ijdb.082741ki
41. Okano M, Bell DW, Haber DA, Li E. DNA Methyltransferases Dnmt3a and Dnmt3b are Essential for De Novo Methylation and Mammalian Development. Cell (1999) 99:247–57. doi: 10.1016/s0092-8674(00)81656-6
42. Kaji K, Factor VM, Andersen JB, Durkin ME, Tomokuni A, Marquardt JU, et al. DNMT1 Is a Required Genomic Regulator for Murine Liver Histogenesis and Regeneration. Hepatol (Baltimore Md.) (2016) 64:582–98. doi: 10.1002/hep.28563
43. Deevy O, Bracken AP. PRC2 Functions in Development and Congenital Disorders. Dev (Cambridge England) (2019) 146. doi: 10.1242/dev.181354
44. Wong KK, Lawrie CH, Green TM. Oncogenic Roles and Inhibitors of DNMT1, DNMT3A, and DNMT3B in Acute Myeloid Leukaemia. biomark Insights (2019) 14:1177271919846454. doi: 10.1177/1177271919846454
45. Saghafinia S, Mina M, Riggi N, Hanahan D, Ciriello G. Pan-Cancer Landscape of Aberrant DNA Methylation Across Human Tumors. Cell Rep (2018) 25:1066–80.e1068. doi: 10.1016/j.celrep.2018.09.082
46. Liang G, Weisenberger DJ. DNA Methylation Aberrancies as a Guide for Surveillance and Treatment of Human Cancers. Epigenetics (2017) 12:416–32. doi: 10.1080/15592294.2017.1311434
47. Casalino L, Verde P. Multifaceted Roles of DNA Methylation in Neoplastic Transformation, From Tumor Suppressors to EMT and Metastasis. Genes (2020) 11. doi: 10.3390/genes11080922
48. Benezeder T, Tiran V, Treitler AAN, Suppan C, Rossmann C, Stoeger H, et al. Multigene Methylation Analysis of Enriched Circulating Tumor Cells Associates With Poor Progression-Free Survival in Metastatic Breast Cancer Patients. Oncotarget (2017) 8:92483–96. doi: 10.18632/oncotarget.21426
49. Xu W, Lu J, Zhao Q, Wu J, Sun J, Han B, et al. Genome-Wide Plasma Cell-Free DNA Methylation Profiling Identifies Potential Biomarkers for Lung Cancer. Dis Markers (2019) 2019:4108474. doi: 10.1155/2019/4108474
50. Panni S, Lovering RC, Porras P, Orchard S. Non-Coding RNA Regulatory Networks, Biochimica Et Biophysica Acta. Gene Regul Mech (2020) 1863:194417. doi: 10.1016/j.bbagrm.2019.194417
51. Anastasiadou E, Jacob LS, Slack FJ. Non-Coding RNA Networks in Cancer, Nature Reviews. Cancer (2018) 18:5–18. doi: 10.1038/nrc.2017.99
52. Romano G, Veneziano D, Acunzo M, Croce CM. Small non-Coding RNA and Cancer. Carcinogenesis (2017) 38:485–91. doi: 10.1093/carcin/bgx026
53. Hombach S, Kretz M. Non-Coding RNAs: Classification, Biology and Functioning. Adv Exp Med Biol (2016) 937:3–17. doi: 10.1007/978-3-319-42059-2_1
54. Mattick JS, Makunin IV. Non-Coding RNA. Hum Mol Genet (2006) 15 Spec No 1:R17–29. doi: 10.1093/hmg/ddl046
55. Fu Q, Liu CJ, Zhai ZS, Zhang X, Qin T, Zhang HW. Single-Cell Non-Coding RNA in Embryonic Development. Adv Exp Med Biol (2018) 1068:19–32. doi: 10.1007/978-981-13-0502-3_3
56. Zehir A, Hua LL, Maska EL, Morikawa Y, Cserjesi P. Dicer is Required for Survival of Differentiating Neural Crest Cells. Dev Biol (2010) 340:459–67. doi: 10.1016/j.ydbio.2010.01.039
57. Chi Y, Wang D, Wang J, Yu W, Yang J. Long Non-Coding RNA in the Pathogenesis of Cancers. Cells (2019) 8. doi: 10.3390/cells8091015
58. Tokumaru Y, Takabe K, Yoshida K, Akao Y. Effects of MIR143 on Rat Sarcoma Signaling Networks in Solid Tumors: A Brief Overview. Cancer Sci (2020) 111:1076–83. doi: 10.1111/cas.14357
59. Shirafkan N, Shomali N, Kazemi T, Shanehbandi D, Ghasabi M, Baghbani E, et al. microRNA-193a-5p Inhibits Migration of Human HT-29 Colon Cancer Cells via Suppression of Metastasis Pathway. J Cell Biochem (2018). doi: 10.1002/jcb.28164
60. Foulkes WD, Priest JR, Duchaine TF. DICER1: Mutations, microRNAs and Mechanisms, Nature Reviews. Cancer (2014) 14:662–72. doi: 10.1038/nrc3802
61. Robertson JC, Jorcyk CL, Oxford JT. DICER1 Syndrome: DICER1 Mutations in Rare Cancers. Cancers (2018) 10. doi: 10.3390/cancers10050143
62. Miranda Furtado CL, Dos Santos Luciano MC, Silva Santos RD, Furtado GP, Moraes MO, Pessoa C. Epidrugs: Targeting Epigenetic Marks in Cancer Treatment. Epigenetics (2019) 14:1164–76. doi: 10.1080/15592294.2019.1640546
63. Zhou Z, Li HQ, Liu F. DNA Methyltransferase Inhibitors and Their Therapeutic Potential. Curr Top Med Chem (2018) 18:2448–57. doi: 10.2174/1568026619666181120150122
64. Hagemann S, Heil O, Lyko F, Brueckner B. Azacytidine and Decitabine Induce Gene-Specific and non-Random DNA Demethylation in Human Cancer Cell Lines. PloS One (2011) 6:e17388. doi: 10.1371/journal.pone.0017388
65. Seelan RS, Mukhopadhyay P, Pisano MM, Greene RM. Effects of 5-Aza-2'-Deoxycytidine (Decitabine) on Gene Expression. Drug Metab Rev (2018) 50:193–207. doi: 10.1080/03602532.2018.1437446
66. Moro H, Hattori N, Nakamura Y, Kimura K, Imai T, Maeda M, et al. Epigenetic Priming Sensitizes Gastric Cancer Cells to Irinotecan and Cisplatin by Restoring Multiple Pathways. Gastric Cancer Off J Int Gastric Cancer Assoc Jpn Gastric Cancer Assoc (2020) 23:105–15. doi: 10.1007/s10120-019-01010-1
67. Gros C, Fahy J, Halby L, Dufau I, Erdmann A, Gregoire JM, et al. DNA Methylation Inhibitors in Cancer: Recent and Future Approaches. Biochimie (2012) 94:2280–96. doi: 10.1016/j.biochi.2012.07.025
68. Lopez M, Halby L, Arimondo PB. DNA Methyltransferase Inhibitors: Development and Applications. Adv Exp Med Biol (2016) 945:431–73. doi: 10.1007/978-3-319-43624-1_16
69. Daniunaite K, Dubikaityte M, Gibas P, Bakavicius A, Rimantas Lazutka J, Ulys A, et al. Clinical Significance of miRNA Host Gene Promoter Methylation in Prostate Cancer. Hum Mol Genet (2017) 26:2451–61. doi: 10.1093/hmg/ddx138
70. Rau RE, Rodriguez BA, Luo M, Jeong M, Rosen A, Rogers JH, et al. DOT1L as a Therapeutic Target for the Treatment of DNMT3A-Mutant Acute Myeloid Leukemia. Blood (2016) 128:971–81. doi: 10.1182/blood-2015-11-684225
71. Wang P, Zhao H, Ren F, Zhao Q, Shi R, Liu X, et al. Research Progress of Epigenetics in Pathogenesis and Treatment of Malignant Tumors. Zhongguo Fei Ai Za Zhi = Chin J Lung Cancer (2020) 23:91–100. doi: 10.3779/j.issn.1009-3419.2020.02.04
72. Milazzo G, Mercatelli D, Di Muzio G, Triboli L, De Rosa P, Perini G, et al. Histone Deacetylases (HDACs): Evolution, Specificity, Role in Transcriptional Complexes, and Pharmacological Actionability. Genes (2020) 11. doi: 10.3390/genes11050556
73. Manzotti G, Ciarrocchi A, Sancisi V. Inhibition of BET Proteins and Histone Deacetylase (HDACs): Crossing Roads in Cancer Therapy. Cancers (2019) 11. doi: 10.3390/cancers11030304
74. Lin YH, Tsui KH, Chang KS, Hou CP, Feng TH, Juang HH. Maspin is a PTEN-Upregulated and P53-Upregulated Tumor Suppressor Gene and Acts as an HDAC1 Inhibitor in Human Bladder Cancer. Cancers (2019) 12. doi: 10.3390/cancers12010010
75. Kim YH, Bagot M, Pinter-Brown L, Rook AH, Porcu P, Horwitz SM, et al. Mogamulizumab Versus Vorinostat in Previously Treated Cutaneous T-Cell Lymphoma (MAVORIC): An International, Open-Label, Randomised, Controlled Phase 3 Trial, The Lancet. Oncology (2018) 19:1192–204. doi: 10.1016/s1470-2045(18)30379-6
76. Myasoedova VA, Sukhorukov V, Grechko AV, Zhang D, Romanenko E, Orekhov V, et al. Inhibitors of DNA Methylation and Histone Deacetylation as Epigenetically Active Drugs for Anticancer Therapy. Curr Pharm Des (2019) 25:635–41. doi: 10.2174/1381612825666190405144026
77. Morel D, Jeffery D, Aspeslagh S, Almouzni G, Postel-Vinay S. Combining Epigenetic Drugs With Other Therapies for Solid Tumours - Past Lessons and Future Promise, Nature Reviews. Clin Oncol (2020) 17:91–107. doi: 10.1038/s41571-019-0267-4
78. Ganesan A, Arimondo PB, Rots MG, Jeronimo C, Berdasco M. The Timeline of Epigenetic Drug Discovery: From Reality to Dreams. Clin Epigenet (2019) 11:174. doi: 10.1186/s13148-019-0776-0
79. Kulka LAM, Fangmann PV, Panfilova D, Olzscha H. Impact of HDAC Inhibitors on Protein Quality Control Systems: Consequences for Precision Medicine in Malignant Disease. Front Cell Dev Biol (2020) 8:425. doi: 10.3389/fcell.2020.00425
80. Pinto V, Bergantim R, Caires HR, Seca H, Guimarães JE, Vasconcelos MH. Multiple Myeloma: Available Therapies and Causes of Drug Resistance. Cancers (2020) 12. doi: 10.3390/cancers12020407
81. Xiao X, Xu Q, Sun Y, Lu Z, Li R, Wang X, et al. 5−Aza−2'−Deoxycytidine Promotes Migration of Acute Monocytic Leukemia Cells via Activation of CCL2−CCR2−ERK Signaling Pathway. Mol Med Rep (2017) 16:1417–24. doi: 10.3892/mmr.2017.6737
82. Dambacher S, de Almeida GP, Schotta G. Dynamic Changes of the Epigenetic Landscape During Cellular Differentiation. Epigenomics (2013) 5:701–13. doi: 10.2217/epi.13.67
83. Yadav T, Quivy JP, Almouzni G. Chromatin Plasticity: A Versatile Landscape That Underlies Cell Fate and Identity. Science (2018) 361:1332–6. doi: 10.1126/science.aat8950
84. Williams BP, Gehring M. Principles of Epigenetic Homeostasis Shared Between Flowering Plants and Mammals. Trends Genet TIG (2020) 36:751–63. doi: 10.1016/j.tig.2020.06.019
85. Pijuan-Sala B, Griffiths JA, Guibentif C, Hiscock TW, Jawaid W, Calero-Nieto FJ, et al. A Single-Cell Molecular Map of Mouse Gastrulation and Early Organogenesis. Nature (2019) 566:490–5. doi: 10.1038/s41586-019-0933-9
86. Dudka D, Meraldi P. Symmetry Does Not Come for Free: Cellular Mechanisms to Achieve a Symmetric Cell Division. Results Probl Cell Differ (2017) 61:301–21. doi: 10.1007/978-3-319-53150-2_14
87. Escobar TM, Oksuz O, Saldaña-Meyer R, Descostes N, Bonasio R, Reinberg D. Active and Repressed Chromatin Domains Exhibit Distinct Nucleosome Segregation During DNA Replication. Cell (2019) 179:953–63.e911. doi: 10.1016/j.cell.2019.10.009
88. Sunchu B, Cabernard C. Principles and Mechanisms of Asymmetric Cell Division. Dev (Cambridge England) (2020) 147. doi: 10.1242/dev.167650
89. Corpet A, Almouzni G. Making Copies of Chromatin: The Challenge of Nucleosomal Organization and Epigenetic Information. Trends Cell Biol (2009) 19:29–41. doi: 10.1016/j.tcb.2008.10.002
90. Haniffa M, Taylor D, Linnarsson S, Aronow BJ, Bader GD, Barker RA, et al. A Roadmap for the Human Developmental Cell Atlas. Nature (2021) 597:196–205. doi: 10.1038/s41586-021-03620-1
91. Vladar EK, Königshoff M. Noncanonical Wnt Planar Cell Polarity Signaling in Lung Development and Disease. Biochem Soc Trans (2020) 48:231–43. doi: 10.1042/bst20190597
92. Ma Y, Zhang P, Wang F, Liu W, Yang J, Qin H. An Integrated Proteomics and Metabolomics Approach for Defining Oncofetal Biomarkers in the Colorectal Cancer. Ann Surg (2012) 255:720–30. doi: 10.1097/SLA.0b013e31824a9a8b
93. Alissafi T, Hatzioannou A, Legaki AI, Varveri A, Verginis P. Balancing Cancer Immunotherapy and Immune-Related Adverse Events: The Emerging Role of Regulatory T Cells. J Autoimmun (2019) 104:102310. doi: 10.1016/j.jaut.2019.102310
94. Zhou W, Wang G, Guo S. Regulation of Angiogenesis via Notch Signaling in Breast Cancer and Cancer Stem Cells. Biochim Biophys Acta (2013) 1836:304–20. doi: 10.1016/j.bbcan.2013.10.003
95. Turdo A, Porcelli G, D'Accardo C, Franco SD, Verona F, Forte S, et al. Metabolic Escape Routes of Cancer Stem Cells and Therapeutic Opportunities. Cancers (2020) 12. doi: 10.3390/cancers12061436
96. Hass R, von der Ohe J, Ungefroren H. Impact of the Tumor Microenvironment on Tumor Heterogeneity and Consequences for Cancer Cell Plasticity and Stemness. Cancers (2020) 12. doi: 10.3390/cancers12123716
97. Yu Y, Wang J, Khaled W, Burke S, Li P, Chen X, et al. Bcl11a is Essential for Lymphoid Development and Negatively Regulates P53. J Exp Med (2012) 209:2467–83. doi: 10.1084/jem.20121846
98. Tsang JC, Yu Y, Burke S, Buettner F, Wang C, Kolodziejczyk AA, et al. Single-Cell Transcriptomic Reconstruction Reveals Cell Cycle and Multi-Lineage Differentiation Defects in Bcl11a-Deficient Hematopoietic Stem Cells. Genome Biol (2015) 16:178. doi: 10.1186/s13059-015-0739-5
99. Santos A, Wernersson R, Jensen LJ. Cyclebase 3.0: A Multi-Organism Database on Cell-Cycle Regulation and Phenotypes. Nucleic Acids Res (2015) 43:D1140–4. doi: 10.1093/nar/gku1092
100. Nomura Y, Hara ES, Yoshioka Y, Nguyen HT, Nosho S, Komori T, et al. DNA Methylation-Based Regulation of Human Bone Marrow-Derived Mesenchymal Stem/Progenitor Cell Chondrogenic Differentiation. Cells Tissues Organs (2019) 207:115–26. doi: 10.1159/000502885
101. Li Q, Zhai Y, Man X, Zhang S, An X. Inhibition of DNA Methyltransferase by RG108 Promotes Pluripotency-Related Character of Porcine Bone Marrow Mesenchymal Stem Cells. Cell Reprogram (2020) 22:82–9. doi: 10.1089/cell.2019.0060
102. Kanapathipillai M. Treating P53 Mutant Aggregation-Associated Cancer. Cancers (2018) 10. doi: 10.3390/cancers10060154
103. Gumaste PV, Penn LA, Cymerman RM, Kirchhoff T, Polsky D, McLellan B. Skin Cancer Risk in BRCA1/2 Mutation Carriers. Br J Dermatol (2015) 172:1498–506. doi: 10.1111/bjd.13626
104. Huang Z, Ma L, Huang C, Li Q, Nice EC. Proteomic Profiling of Human Plasma for Cancer Biomarker Discovery. Proteomics (2017) 17. doi: 10.1002/pmic.201600240
105. Yuan H, Yan M, Zhang G, Liu W, Deng C, Liao G, et al. CancerSEA: A Cancer Single-Cell State Atlas. Nucleic Acids Res (2019) 47:D900–8. doi: 10.1093/nar/gky939
106. Buisson R, Langenbucher A, Bowen D, Kwan EE, Benes CH, Zou L, et al. Passenger Hotspot Mutations in Cancer Driven by APOBEC3A and Mesoscale Genomic Features. Science (2019) 364. doi: 10.1126/science.aaw2872
107. Seton-Rogers S. Passengers Masquerading as Cancer Drivers, Nature Reviews. Cancer (2019) 19:485. doi: 10.1038/s41568-019-0184-y
108. Blokzijl F, de Ligt J, Jager M, Sasselli V, Roerink S, Sasaki N, et al. Tissue-Specific Mutation Accumulation in Human Adult Stem Cells During Life. Nature (2016) 538:260–4. doi: 10.1038/nature19768
109. Martincorena I, Roshan A, Gerstung M, Ellis P, Van Loo P, McLaren S, et al. Tumor Evolution. High Burden and Pervasive Positive Selection of Somatic Mutations in Normal Human Skin. Science (2015) 348:880–6. doi: 10.1126/science.aaa6806
110. Chappell G, Pogribny IP, Guyton KZ, Rusyn I. Epigenetic Alterations Induced by Genotoxic Occupational and Environmental Human Chemical Carcinogens: A Systematic Literature Review, Mutation Research. Rev Mutat Res (2016) 768:27–45. doi: 10.1016/j.mrrev.2016.03.004
111. Birkett N, Al-Zoughool M, Bird M, Baan RA, Zielinski J, Krewski D. Overview of Biological Mechanisms of Human Carcinogens, Journal of Toxicology and Environmental Health. Part B Crit Rev (2019) 22:288–359. doi: 10.1080/10937404.2019.1643539
112. Smith MT, Guyton KZ, Gibbons CF, Fritz JM, Portier CJ, Rusyn I, et al. Key Characteristics of Carcinogens as a Basis for Organizing Data on Mechanisms of Carcinogenesis. Environ Health Perspect (2016) 124:713–21. doi: 10.1289/ehp.1509912
113. Muñoz-Espín D, Cañamero M, Maraver A, Gómez-López G, Contreras J, Murillo-Cuesta S, et al. Programmed Cell Senescence During Mammalian Embryonic Development. Cell (2013) 155:1104–18. doi: 10.1016/j.cell.2013.10.019
114. Corsini NS, Knoblich JA. Tracing Stem Cell Division in Adult Neurogenesis. Cell Stem Cell (2018) 22:143–5. doi: 10.1016/j.stem.2018.01.012
115. Sánchez-Taltavull D. Optimal Architecture of Differentiation Cascades With Asymmetric and Symmetric Stem Cell Division. J Theor Biol (2016) 407:106–17. doi: 10.1016/j.jtbi.2016.07.02
116. Murata M. Inflammation and Cancer. Environ Health Prev Med (2018) 23:50. doi: 10.1186/s12199-018-0740-1
117. Katoh M. Multi−layered Prevention and Treatment of Chronic Inflammation, Organ Fibrosis and Cancer Associated With Canonical WNT/β−Catenin Signaling Activation (Review). Int J Mol Med (2018) 42:713–25. doi: 10.3892/ijmm.2018.3689
118. Clifford GM, Tully S, Franceschi S. Carcinogenicity of Human Papillomavirus (HPV) Types in HIV-Positive Women: A Meta-Analysis From HPV Infection to Cervical Cancer. Clin Infect Dis Off Publ Infect Dis Soc Am (2017) 64:1228–35. doi: 10.1093/cid/cix135
119. Gaillard H, García-Muse T, Aguilera A. Replication Stress and Cancer, Nature Reviews. Cancer (2015) 15:276–89. doi: 10.1038/nrc3916
120. Jyoti S, Tandon S. Chemical and Physical Factors Influencing the Dynamics of Differentiation in Embryonic Stem Cells. Curr Stem Cell Res Ther (2015) 10:477–91. doi: 10.2174/1574888x10666150416113055
121. Clause KC, Liu LJ, Tobita K. Directed Stem Cell Differentiation: The Role of Physical Forces. Cell Commun Adhes (2010) 17:48–54. doi: 10.3109/15419061.2010.492535
122. Bhagat TD, Chen S, Bartenstein M, Barlowe AT, Von Ahrens D, Choudhary GS, et al. Epigenetically Aberrant Stroma in MDS Propagates Disease via Wnt/β-Catenin Activation. Cancer Res (2017) 77:4846–57. doi: 10.1158/0008-5472.Can-17-0282
123. Roulot A, Héquet D, Guinebretière JM, Vincent-Salomon A, Lerebours F, Dubot C, et al. Tumoral Heterogeneity of Breast Cancer. Ann Biol Clin (2016) 74:653–60. doi: 10.1684/abc.2016.1192
124. Flavahan WA, Gaskell E, Bernstein BE. Epigenetic Plasticity and the Hallmarks of Cancer. Science (2017) 357. doi: 10.1126/science.aal2380
125. Tang J, Luo Y, Wu G. A Glycolysis-Related Gene Expression Signature in Predicting Recurrence of Breast Cancer. Aging (2020) 12:24983–94. doi: 10.18632/aging.103806
126. Xi Y, Fowdur M, Liu Y, Wu H, He M, Zhao J. Differential Expression and Bioinformatics Analysis of circRNA in Osteosarcoma. Biosci Rep (2019) 39. doi: 10.1042/bsr20181514
127. Sell S. On the Stem Cell Origin of Cancer. Am J Pathol (2010) 176:2584–494. doi: 10.2353/ajpath.2010.091064
128. Eun K, Ham SW, Kim H. Cancer Stem Cell Heterogeneity: Origin and New Perspectives on CSC Targeting. BMB Rep (2017) 50:117–25. doi: 10.5483/bmbrep.2017.50.3.222
129. Prasetyanti PR, Medema JP. Intra-Tumor Heterogeneity From a Cancer Stem Cell Perspective. Mol Cancer (2017) 16:41. doi: 10.1186/s12943-017-0600-4
130. Chaffer CL, Weinberg RA. How Does Multistep Tumorigenesis Really Proceed? Cancer Discov (2015) 5:22–4. doi: 10.1158/2159-8290.Cd-14-0788
131. Hanahan D, Weinberg RA. Hallmarks of Cancer: The Next Generation. Cell (2011) 144:646–74. doi: 10.1016/j.cell.2011.02.013
132. Fang X, Zhong G, Wang Y, Lin Z, Lin R, Yao T. Low GAS5 Expression may Predict Poor Survival and Cisplatin Resistance in Cervical Cancer. Cell Death Dis (2020) 11:531. doi: 10.1038/s41419-020-2735-2
133. Sheng W, LaFleur MW, Nguyen TH, Chen S, Chakravarthy A, Conway JR, et al. LSD1 Ablation Stimulates Anti-Tumor Immunity and Enables Checkpoint Blockade. Cell (2018) 174:549–63.e519. doi: 10.1016/j.cell.2018.05.052
134. Qin Y, Vasilatos SN, Chen L, Wu H, Cao Z, Fu Y, et al. Inhibition of Histone Lysine-Specific Demethylase 1 Elicits Breast Tumor Immunity and Enhances Antitumor Efficacy of Immune Checkpoint Blockade. Oncogene (2019) 38:390–405. doi: 10.1038/s41388-018-0451-5
135. Saini A, Gallo JM. Epigenetic Instability may Alter Cell State Transitions and Anticancer Drug Resistance. PloS Comput Biol (2021) 17:e1009307. doi: 10.1371/journal.pcbi.1009307
136. Ishay-Ronen D, Diepenbruck M, Kalathur RKR, Sugiyama N, Tiede S, Ivanek R, et al. Gain Fat-Lose Metastasis: Converting Invasive Breast Cancer Cells Into Adipocytes Inhibits Cancer Metastasis. Cancer Cell (2019) 35:17–32.e16. doi: 10.1016/j.ccell.2018.12.002
Keywords: oncobiology, cancer heterogeneity, epigenetics, therapeutic target, transdifferentiation
Citation: Yu X, Li M, Guo C, Wu Y, Zhao L, Shi Q, Song J and Song B (2021) Therapeutic Targeting of Cancer: Epigenetic Homeostasis. Front. Oncol. 11:747022. doi: 10.3389/fonc.2021.747022
Received: 25 July 2021; Accepted: 11 October 2021;
Published: 26 October 2021.
Edited by:
Raquel Montenegro, Federal University of Ceara, BrazilReviewed by:
Cristiana Libardi M. Furtado, Federal University of Ceará, BrazilCopyright © 2021 Yu, Li, Guo, Wu, Zhao, Shi, Song and Song. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Bin Song, U29uZ2JpbnRhcmFAMTYzLmNvbQ==; Jianbo Song, amlhbmJvMjYxMUAxMjYuY29t
†These authors have contributed equally to this work and share first authorship
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