AUTHOR=Elhalawani Hesham , Lin Timothy A. , Volpe Stefania , Mohamed Abdallah S. R. , White Aubrey L. , Zafereo James , Wong Andrew J. , Berends Joel E. , AboHashem Shady , Williams Bowman , Aymard Jeremy M. , Kanwar Aasheesh , Perni Subha , Rock Crosby D. , Cooksey Luke , Campbell Shauna , Yang Pei , Nguyen Khahn , Ger Rachel B. , Cardenas Carlos E. , Fave Xenia J. , Sansone Carlo , Piantadosi Gabriele , Marrone Stefano , Liu Rongjie , Huang Chao , Yu Kaixian , Li Tengfei , Yu Yang , Zhang Youyi , Zhu Hongtu , Morris Jeffrey S. , Baladandayuthapani Veerabhadran , Shumway John W. , Ghosh Alakonanda , Pöhlmann Andrei , Phoulady Hady A. , Goyal Vibhas , Canahuate Guadalupe , Marai G. Elisabeta , Vock David , Lai Stephen Y. , Mackin Dennis S. , Court Laurence E. , Freymann John , Farahani Keyvan , Kaplathy-Cramer Jayashree , Fuller Clifton D. 

TITLE=Machine Learning Applications in Head and Neck Radiation Oncology: Lessons From Open-Source Radiomics Challenges

JOURNAL=Frontiers in Oncology

VOLUME=8

YEAR=2018

URL=https://www.frontiersin.org/journals/oncology/articles/10.3389/fonc.2018.00294

DOI=10.3389/fonc.2018.00294

ISSN=2234-943X

ABSTRACT=<p>Radiomics leverages existing image datasets to provide non-visible data extraction via image post-processing, with the aim of identifying prognostic, and predictive imaging features at a sub-region of interest level. However, the application of radiomics is hampered by several challenges such as lack of image acquisition/analysis method standardization, impeding generalizability. As of yet, radiomics remains intriguing, but not clinically validated. We aimed to test the feasibility of a non-custom-constructed platform for disseminating existing large, standardized databases across institutions for promoting radiomics studies. Hence, University of Texas MD Anderson Cancer Center organized two public radiomics challenges in head and neck radiation oncology domain. This was done in conjunction with MICCAI 2016 satellite symposium using Kaggle-in-Class, a machine-learning and predictive analytics platform. We drew on clinical data matched to radiomics data derived from diagnostic contrast-enhanced computed tomography (CECT) images in a dataset of 315 patients with oropharyngeal cancer. Contestants were tasked to develop models for (i) classifying patients according to their human papillomavirus status, or (ii) predicting local tumor recurrence, following radiotherapy. Data were split into training, and test sets. Seventeen teams from various professional domains participated in one or both of the challenges. This review paper was based on the contestants' feedback; provided by 8 contestants only (47%). Six contestants (75%) incorporated extracted radiomics features into their predictive model building, either alone (<italic>n</italic> = 5; 62.5%), as was the case with the winner of the “HPV” challenge, or in conjunction with matched clinical attributes (<italic>n</italic> = 2; 25%). Only 23% of contestants, notably, including the winner of the “local recurrence” challenge, built their model relying solely on clinical data. In addition to the value of the integration of machine learning into clinical decision-making, our experience sheds light on challenges in sharing and directing existing datasets toward clinical applications of radiomics, including hyper-dimensionality of the clinical/imaging data attributes. Our experience may help guide researchers to create a framework for sharing and reuse of already published data that we believe will ultimately accelerate the pace of clinical applications of radiomics; both in challenge or clinical settings.</p>