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ORIGINAL RESEARCH article

Front. Neurosci.
Sec. Neurodegeneration
Volume 18 - 2024 | doi: 10.3389/fnins.2024.1488133
This article is part of the Research Topic Progress in Neuroacanthocytosis Syndromes and Related Diseases Including other Bulk Lipid Transfer Disorders View all 9 articles

Impact of Genetic Test Interpretation on a VPS13B Missense Variant in Cohen Syndrome

Provisionally accepted
Gudrun Schottmann Gudrun Schottmann 1Carmen Martínez Almudéver Carmen Martínez Almudéver 2Julia C. Knop Julia C. Knop 2Eun Kyung Suk Eun Kyung Suk 3Zianka Meyer Zianka Meyer 4Jürgen Kohlhase Jürgen Kohlhase 5Nastassja Himmelreich Nastassja Himmelreich 6Jirko Kühnisch Jirko Kühnisch 7Claus-Eric Ott Claus-Eric Ott 8Wenke Seifert Wenke Seifert 2*
  • 1 Zentrum für Sozial- und Neuropädiatrie (DBZ), Vivantes Klinikum Neukölln, Berlin, Berlin, Germany
  • 2 Institute of Cell Biology and Neurobiology, Charité University Medicine Berlin, Berlin, Germany
  • 3 Praxis für Humangenetik, Berlin, Germany
  • 4 Diagenom GmbH, Rostock, Germany
  • 5 SYNLAB MVZ Humangenetik Freiburg GmbH, Center for Human Genetics Freiburg, Freiburg, Germany
  • 6 Zentrum für Humangenetik, Tübingen, Germany
  • 7 Experimental and Clinical Research Center, a cooperation between the Max Delbrück Center for Molecular Medicine in the Helmholtz Association and Charité - Universitätsmedizin Berlin, Berlin, Germany
  • 8 Institute for Medical Genetics and Human Genetics, Charité University Medicine Berlin, Berlin, Germany

The final, formatted version of the article will be published soon.

    Cohen syndrome (CS) is an early-onset pediatric neurodevelopmental disorder characterized by postnatal microcephaly and intellectual disability. An accurate diagnosis for individuals with CS is crucial, especially for their caretakers and future prospects. CS is predominantly caused by rare homozygous or compound heterozygous pathogenic variants in the VPS13B gene that disrupt protein translation and lead to loss of function of the encoded VPS13B protein. The widespread incorporation of next-generation sequencing approaches in genetic diagnostics increases the number of individuals carrying VPS13B mutant alleles. In parallel, it raises the detection of variants of unknown clinical significance, necessitating further functional pathogenicity validation. Here, we report a family with two CS patients. Within this family four rare VPS13B variants have been detected: c.710G>C, p.Arg237Pro; c.6804delT, p.Phe2268Leufs*24; c.7304C>T, p.Ala2435Val; and c.10302T>A, p.Tyr3434* challenging the interpretation of their disease causing character. The variants c.6804delT, p.Phe2268Leufs*24 as well as c.710G>C, p.Arg237Pro were detected in trans and are genetically considered as CS disease causing. Functional characterization of the missense variant c.710G>C, p.Arg237Pro shows diminished localization at the Golgi complex, underlining its clinical relevance and ACMG classification as likely pathogenic, class 4. Taken together, we emphasize combined genetic and functional testing of VPS13B missense variants to guarantee precise molecular diagnosis and personalized medical care for CS patients.

    Keywords: VPS13B, Cohen Syndrome, missense variant, functional testing, Golgi complex

    Received: 29 Aug 2024; Accepted: 18 Oct 2024.

    Copyright: © 2024 Schottmann, Martínez Almudéver, Knop, Suk, Meyer, Kohlhase, Himmelreich, Kühnisch, Ott and Seifert. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

    * Correspondence: Wenke Seifert, Institute of Cell Biology and Neurobiology, Charité University Medicine Berlin, Berlin, Germany

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