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ORIGINAL RESEARCH article

Front. Neurol.
Sec. Neurorehabilitation
Volume 15 - 2024 | doi: 10.3389/fneur.2024.1373605
This article is part of the Research Topic Regenerative Neurorehabilitation View all articles

The Shared Molecular Mechanism of Spinal Cord Injury and Sarcopenia: A Comprehensive Genomics Analysis

Provisionally accepted
Wang Binyang Wang Binyang yang xu yang xu *Chuanxiong Li Chuanxiong Li yang rongxing yang rongxing *sun tong sun tong *yin yong yin yong *
  • rehabilitation, Second People’s Hospital of Yunnan Province, Kunming, Yunnan Province, China

The final, formatted version of the article will be published soon.

    This study focused on the potential biomarkers that co-exist in spinal cord injury (SCI) and sarcopenia, with the expectation to diagnose and prognose patients in the acute phase and rehabilitation phase using comprehensive data analysis. The datasets used in this study were downloaded from Gene Expression Omnibus (GEO) database. Firstly, the datasets were analyzed with the "DEseq2" and "Limma" R package to identify differentially expressed genes (DEGs), which were then visualized using volcano plots. The SCI and sarcopenia DEGs that overlapped were used to construct a protein-protein interaction (PPI) network. Three algorithms were used to obtain a list of the top 10 hub genes. Next, validation of the hub genes was performed using three datasets.According to the results, the top hub genes were DCN, FSTL1, and COL12A1, which subsequently underwent were Gene Ontology and Kyoto Encyclopedia of Genes and Genomes enrichment analyses. We also assessed immune cell infiltration with the CIBERSORT algorithm to explore the immune cell landscape. The correlations between the hub genes and age and body mass index were investigated. To illustrate the biological mechanisms of the hub genes more clearly, a single-cell RNA-seq dataset was assessed to determine gene expression when muscle injury occurred.According to our analysis and the role in muscle, we chose the fibro/adipogenic progenitors (FAPs) cluster in the next step of the analysis. In the sub cluster analysis, we use the "Monocle" package to perform the trajectory analysis in different injury time points and different cell states. A total of 144 overlapped genes were obtained from two datasets. Following PPI network analysis and validation, we finally identified three hub-genes (DCN, FSTL1, and COL12A1), which were significantly altered in sarcopenic SCI patients both before and after rehabilitation training. The three hub genes were also significantly expressed in the FAPs clusters. Furthermore, following injury, the expression of the hub genes changed with the time points, changing in FAPs cluster. The three hub genes identified in this study could be used to distinguish the sarcopenia state at the genomic level. Additionally, they may also play a prognostic role in evaluating the efficiency of rehabilitation training.

    Keywords: spinal cord injury, Sarcopenia, Rehabilitation training, skeletal muscle, Genomics

    Received: 20 Jan 2024; Accepted: 09 Aug 2024.

    Copyright: © 2024 Binyang, xu, Li, rongxing, tong and yong. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

    * Correspondence:
    yang xu, rehabilitation, Second People’s Hospital of Yunnan Province, Kunming, 650021, Yunnan Province, China
    yang rongxing, rehabilitation, Second People’s Hospital of Yunnan Province, Kunming, 650021, Yunnan Province, China
    sun tong, rehabilitation, Second People’s Hospital of Yunnan Province, Kunming, 650021, Yunnan Province, China
    yin yong, rehabilitation, Second People’s Hospital of Yunnan Province, Kunming, 650021, Yunnan Province, China

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