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ORIGINAL RESEARCH article

Front. Neuroinform.
Volume 18 - 2024 | doi: 10.3389/fninf.2024.1427642
This article is part of the Research Topic Reproducible Analysis in Neuroscience View all 8 articles

Reproducible supervised learning-assisted classification of spontaneous synaptic waveforms with Eventer

Provisionally accepted
  • 1 School of Life Sciences, University of Sussex, Brighton, United Kingdom
  • 2 Department of Clinical Neuroscience, Brighton and Sussex Medical School, Brighton, United Kingdom
  • 3 Division of Medical Education, Brighton and Sussex Medical School, Brighton, United Kingdom

The final, formatted version of the article will be published soon.

    Detection and analysis of spontaneous synaptic events is an extremely common task in many neuroscience research labs. Various algorithms and tools have been developed over the years to improve the sensitivity for detecting synaptic events. However, the final stages of most procedures for detecting synaptic events still involves manual selection of candidate events. This step in the analysis is laborious and requires care and attention to maintain consistency of event selection across the whole dataset. Manual selection can introduce bias and subjective selection criteria that cannot be shared with other labs simply in reporting methods.To address this, we have created Eventer, a standalone application for the detection of spontaneous synaptic events acquired by electrophysiology or imaging. This opensource application uses the freely available MATLAB Runtime and is deployed on Mac, Windows and Linux systems. The principle of the Eventer application is to learn the user's 'expert' strategy for classifying a set of detected event candidates from a small subset of the data, and then automatically apply the same criterion on the remaining dataset. Eventer first uses a suitable model template to pull out event candidates using Fast Fourier Transform (FFT)based deconvolution with a low threshold. Random forests are then created and trained to associate various features of the events with manual labelling. The stored model file can be reloaded and used to analyse large datasets with greater consistency. The availability of the source code and its user interface provide a framework with the scope to further tune the existing Random Forests implementation, or add additional, artificial intelligence classification methods.The eventer website () includes a repository where researchers can upload and share their machine learning model files and thereby provide greater opportunities for enhancing reproducibility when analysing datasets of spontaneous synaptic activity. In summary, Eventer, and the associated repository, could allow researchers studying synaptic transmission to increase throughput of their data analysis and address the increasing concerns of reproducibility in neuroscience research.

    Keywords: machine learning, event detection, Synapses, analysis, reproducible. (Min.5-Max. 8)

    Received: 04 May 2024; Accepted: 15 Aug 2024.

    Copyright: © 2024 Winchester, Steele, Liu, Maia Chagas, Aziz and Penn. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

    * Correspondence: Oliver G. Steele, Department of Clinical Neuroscience, Brighton and Sussex Medical School, Brighton, United Kingdom

    Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.