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ORIGINAL RESEARCH article

Front. Mol. Biosci.
Sec. Molecular Diagnostics and Therapeutics
Volume 12 - 2025 | doi: 10.3389/fmolb.2025.1507163

Genome-wide CRISPR/Cas9 screening identifies key profibrotic regulators of TGF-β1-induced epithelial-mesenchymal transformation and pulmonary fibrosis

Provisionally accepted
Chunjiang Tan Chunjiang Tan Juan Wang Juan Wang *Xiangrong Ye Xiangrong Ye *Kaidirina Kasimu Kaidirina Kasimu *Ye Li Ye Li *Feng Luo Feng Luo *Hui Yi Hui Yi *Yifeng Luo Yifeng Luo *
  • The First Affiliated Hospital of Sun Yat-sen University, Guangzhou, China

The final, formatted version of the article will be published soon.

    The idiopathic pulmonary fibrosis (IPF) is a progressive and lethal interstitial lung disease with high morbidity and mortality. IPF is characterized by excessive extracellular matrix accumulation (ECM) and epithelial-mesenchymal transformation (EMT). To date, few anti-fibrotic therapeutics are available to reverse the progression of pulmonary fibrosis, and it is important to explore new profibrotic molecular regulators mediating EMT and pulmonary fibrosis. Methods: Based on our model of TGF-β1-induced EMT in BEAS-2B cells, we performed the genomewide CRISPR/Cas9 knockout (GeCKO) screening technique, pathway and functional enrichment analysis, loss-of-function experiment, as well as other experimental techniques to comprehensively investigate profibrotic regulators contributing to EMT and the pathogenesis of pulmonary fibrosis. Results: Utilizing the GeCKO library screening, we identified 76 top molecular regulators. Ten candidate genes were subsequently confirmed by integrating the high-throughput data with findings from pathway and functional enrichment analysis. Among the candidate genes, knockout of COL20A1 and COL27A1 led to decreased mRNA expression of ECM components (Fibronectin and Collagen-I), as well as an increased rate of cell apoptosis. The mRNA expression of Collagen-I, together with the cell viability and migration, were inhibited when knocking out the WNT11. In addition, a decrease in the protein deposition of ECM components was observed by suppressing the expression of COL20A1, COL27A1, and WNT11. Conclusions: Our study demonstrates that the COL20A1, COL27A1, and WNT11 serve as key profibrotic regulators of EMT. Gaining understanding and insights into these key profibrotic regulators of EMT paves the way for the discovery of new therapeutic targets against the onset and progression of IPF.

    Keywords: Idiopathic Pulmonary Fibrosis, Epithelial-mesenchymal transformation, Extracellular Matrix, genome-wide CRISPR/Cas9 knockout screening, TGF-β1, COL20A1, COL27A1, Wnt11

    Received: 07 Oct 2024; Accepted: 09 Jan 2025.

    Copyright: © 2025 Tan, Wang, Ye, Kasimu, Li, Luo, Yi and Luo. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

    * Correspondence:
    Juan Wang, The First Affiliated Hospital of Sun Yat-sen University, Guangzhou, China
    Xiangrong Ye, The First Affiliated Hospital of Sun Yat-sen University, Guangzhou, China
    Kaidirina Kasimu, The First Affiliated Hospital of Sun Yat-sen University, Guangzhou, China
    Ye Li, The First Affiliated Hospital of Sun Yat-sen University, Guangzhou, China
    Feng Luo, The First Affiliated Hospital of Sun Yat-sen University, Guangzhou, China
    Hui Yi, The First Affiliated Hospital of Sun Yat-sen University, Guangzhou, China
    Yifeng Luo, The First Affiliated Hospital of Sun Yat-sen University, Guangzhou, China

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