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ORIGINAL RESEARCH article
Front. Mol. Biosci.
Sec. Molecular Diagnostics and Therapeutics
Volume 11 - 2024 |
doi: 10.3389/fmolb.2024.1524827
Integrated Multi-Omics Analysis Describes Immune Profiles in Ischemic Heart Failure and Identifies PTN as a Novel Biomarker
Provisionally accepted- 1 South China University of Technology, Guangzhou, China
- 2 Department of Cardiovascular Surgery, Guangdong Provincial People's Hospital, Guangzhou, China
- 3 Department of Nephrology, First Affiliated Hospital of Gannan Medical University, Ganzhou, Ganzhou, Jiangxi Province, China
Heart failure represents the terminal stage of various cardiac diseases and is a leading cause of mortality globally. It is characterized by rapid progression, severe symptoms, and poor clinical outcomes. Ischemic heart failure (IHF), primarily driven by coronary artery disease, involves intricate mechanisms that are not fully understood. Immune responses play a pivotal role in this context, as hypoxia-triggered inflammation contributes to cardiac muscle remodeling. Remodeling in areas unaffected directly by infarction can exacerbate disease outcomes, emphasizing the need for specific biomarkers to prevent cardiac fibrosis and disease progression. In this study, we utilized multi-omics data to elucidate the intricate immune landscape of heart failure at various regulatory levels. Given the substantial size of our transcriptomic dataset, we used diverse machine learning techniques to identify key mRNAs. For smaller datasets such as our proteomic dataset, we applied multilevel data cleansing and enhancement using principles from network biology. The research culminated in the development of a scalable, integrated -omics analysis pipeline, through which pleiotrophin (PTN) was identified as a potential biomarker for preventing cardiac fibrosis. The present study not only provides a comprehensive perspective on immune dynamics in IHF but also offers valuable insights for the identification of biomarkers, discovery of therapeutic targets, and development of drugs.
Keywords: Ischemic heart failure, immune response, multi-omics, biomarker, PTN
Received: 08 Nov 2024; Accepted: 28 Nov 2024.
Copyright: © 2024 Xiong, Li, Wang, Kong, Li, Liu, Wu and Fengxia. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
* Correspondence:
Quhuan Li, South China University of Technology, Guangzhou, China
Yueheng Wu, Department of Cardiovascular Surgery, Guangdong Provincial People's Hospital, Guangzhou, China
Zhang Fengxia, Department of Nephrology, First Affiliated Hospital of Gannan Medical University, Ganzhou, Ganzhou, Jiangxi Province, China
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