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ORIGINAL RESEARCH article

Front. Mol. Biosci.
Sec. Molecular Diagnostics and Therapeutics
Volume 11 - 2024 | doi: 10.3389/fmolb.2024.1425143
This article is part of the Research Topic Methods of Tumor Diagnosis and Pivotal Gene Regulatory Mechanisms in Tumorigenesis and Development View all 3 articles

Screening and identification of the hub genes in severe acute pancreatitis and sepsis

Provisionally accepted
Si-Jiu Yang Si-Jiu Yang 1Bao-He Chen Bao-He Chen 1*Yan Luo Yan Luo 1*Ling-Hui Zhan Ling-Hui Zhan 1,2*
  • 1 Department of Intensive Care Unit, Zhongshan Hospital of Xiamen University, Xiamen, China
  • 2 School of Clinical Medicine, Fujian Medical University, Fuzhou, Fujian Province, China

The final, formatted version of the article will be published soon.

    Background: Severe acute pancreatitis (SAP) is accompanied with acute onset, rapid progression, and complicated condition. Sepsis is a common complication of SAP with a high mortality rate. This research aimed to identify the shared hub genes and key pathways of SAP and sepsis, and to explore their functions, molecular mechanism, and clinical value. Methods: We obtained SAP and sepsis datasets from the Gene Expression Omnibus (GEO) database and employed differential expression analysis and weighted gene coexpression network analysis (WGCNA) to identify the shared differentially expressed genes (DEGs). Functional enrichment analysis and protein-protein interaction (PPI) was used on shared DEGs to reveal underlying mechanisms in SAP-associated sepsis. Machine learning methods including random forest (RF), least absolute shrinkage and selection operator (LASSO) and support vector machine recursive feature elimination (SVM-RFE) were adopted for screening hub genes. Then, receiver operating characteristic (ROC) curve and nomogram were applied to evaluate the diagnostic performance. Finally, immune cell infiltration analysis was conducted to go deeply into the immunological landscape of sepsis. Result: We obtained a total of 123 DEGs through cross analysis between Differential expression analysis and WGCNA important module. The Gene Ontology (GO) analysis uncovered the shared genes exhibited a significant enrichment in regulation of inflammatory response. The Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis revealed that the shared genes were primarily involved in immunoregulation by conducting NOD-like receptor (NLR) signaling pathway. Three machine learning results revealed that two overlapping genes (ARG1, HP) were identified as shared hub genes for SAP and sepsis. The immune infiltration results showed that immune cells played crucial part in the pathogenesis of sepsis and the two hub genes were substantially associated with immune cells, which may be a therapy target. Conclusion: ARG1 and HP may affect SAP and sepsis by regulating inflammation and immune responses, shedding light on potential future diagnostic and therapeutic approaches for SAP-associated sepsis.

    Keywords: Severe acute pancreatitis, Sepsis, Hub genes, machine learning, Immune Cell Infiltration

    Received: 29 Apr 2024; Accepted: 31 Aug 2024.

    Copyright: © 2024 Yang, Chen, Luo and Zhan. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

    * Correspondence:
    Bao-He Chen, Department of Intensive Care Unit, Zhongshan Hospital of Xiamen University, Xiamen, China
    Yan Luo, Department of Intensive Care Unit, Zhongshan Hospital of Xiamen University, Xiamen, China
    Ling-Hui Zhan, Department of Intensive Care Unit, Zhongshan Hospital of Xiamen University, Xiamen, China

    Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.