ORIGINAL RESEARCH article

Front. Microbiol.

Sec. Terrestrial Microbiology

Volume 16 - 2025 | doi: 10.3389/fmicb.2025.1570703

This article is part of the Research TopicSoil Carbon Sequestration and Microbial Energy MetabolismView all 5 articles

Wetland restoration suppresses microbial carbon metabolism by altering keystone species interactions

Provisionally accepted
Huijie  ZhengHuijie Zheng1Deyan  LiuDeyan Liu2Ye  LiYe Li1Zengming  ChenZengming Chen1Junjie  LiJunjie Li1Yanhong  DongYanhong Dong1Cong  YangCong Yang1Yuncai  MiaoYuncai Miao1Junji  YuanJunji Yuan1Weixin  DingWeixin Ding1*
  • 1Institute of Soil Science, Chinese Academy of Sciences (CAS), Nanjing, China
  • 2Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, Jiangsu Province, China

The final, formatted version of the article will be published soon.

Soil bacteria play a pivotal role in regulating multifaceted functions of terrestrial ecosystems.Unraveling the succession of bacterial communities and the feedback mechanism on soil organic carbon (SOC) dynamics help embed the ecology of microbiome into C cycling model. However, how wetland restoration drives soil bacterial community assembly and species association to regulate microbial C metabolism remains unclear. Here, we investigated soil bacterial diversity, community structure and co-occurrence network, enzyme activities and SOC decomposition in restored wetlands for one, three, and four years from paddy fields in Northeast China. Wetland restoration for three and four years increased taxonomic (richness) and phylogenetic diversities by 2.39-3.96% and 2.13-3.02%, respectively, and increased the relative contribution of nestedness to community dissimilarity, indicating increased richness changed soil bacterial community structure. However, wetland restoration for three and four years decreased the richness index of aerobic Firmicutes by 5.04-5.74% due to stronger anaerobic condition characterized by increased soil Fe 2+ /Fe 3+ from 0.20 to 0.64.Besides, wetland restoration for four year decreased network complexity (characterized by decreased node number by 2.51%, edge number by 9.62%, positive/negative edge number by 6.37%, average degree by 5.74% and degree centralization by 6.34%). Robustness index decreased with the increase of restoration duration, while vulnerability index increased with the increase of restoration duration, indicating that wetland restoration decreased network stability of soil bacterial communities. These results might be because stronger anaerobic condition induced the decrease of aerobic Bacilli richness index in keystone module, thereby reducing positive association within keystone module. Decreased positive species association within keystone module in turn weakened microbial C metabolism by decreasing hydrolase activities from 7.49 to 5.37 mmol kg SOC -1 h -1 and oxidase activities from 627 to 411 mmol kg SOC -1 h -1 , leading to the decrease of SOC decomposition rate from 1.39 to 1.08 g C kg SOC -1 during wetland restoration. Overall, our results suggested that although wetland restoration after agricultural abandonment increased soil bacterial diversity, it decreased positive association within Bacilli-dominated keystone module under stronger anaerobic condition, which weakened microbial C metabolism and SOC decomposition.

Keywords: agricultural abandonment, bacterial diversity, Co-occurrence network, Carbon Metabolism, Soil organic carbon decomposition, wetland restoration

Received: 04 Feb 2025; Accepted: 17 Apr 2025.

Copyright: © 2025 Zheng, Liu, Li, Chen, Li, Dong, Yang, Miao, Yuan and Ding. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

* Correspondence: Weixin Ding, Institute of Soil Science, Chinese Academy of Sciences (CAS), Nanjing, China

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