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ORIGINAL RESEARCH article

Front. Microbiol.
Sec. Virology
Volume 16 - 2025 | doi: 10.3389/fmicb.2025.1492038

Metagenomic investigation of viruses in green sea turtles (Chelonia mydas)

Provisionally accepted
Hongwei Li Hongwei Li 1*Yuan Chen Yuan Chen 1Zhongrong Xia Zhongrong Xia 2Daohua Zhuang Daohua Zhuang 3Feng Cong Feng Cong 4Yue-Xiao Lian Yue-Xiao Lian 4
  • 1 Huizhou University, Huizhou, China
  • 2 Sea Turtle National Nature Reserve Administration, Huidong , chi'na, Huidong, China
  • 3 Yunnan University, Kunming, Yunnan Province, China
  • 4 Guangdong Provincial Key Laboratory of Laboratory Animals, Guangzhou, China

The final, formatted version of the article will be published soon.

    Green sea turtles are listed on the International Union for Conservation of Nature's Red List of Threatened Species. Thus, conservation efforts, including investigation of factors affecting the health of green sea turtles, are critical. Viral communities play vital roles in maintaining animal health. In the present study, shotgun metagenomics was used for the first time to survey viruses in the feces of green sea turtles. Most viral contigs were DNA viruses that mainly belonged to Caudoviricetes, followed by Crassvirales. Additionally, most of the viral contigs were not assigned to any known family or genus, implying a large knowledge gap in the taxonomy of green sea turtle gut viruses. Host prediction showed that most viruses were connected to two phyla: Bacteroidetes and Firmicutes. Furthermore, KEGG enrichment analysis showed that the viral genes were mainly involved in phageassociated and metabolic pathways. Phylogenetic tree reconstruction of Caudovirales terminase large-subunit (TerL) protein showed that most of the sequences were phylogenetically distant. This study expands our understanding of the viral diversity in green sea turtles. In particular, analysis of the virome RNA fraction is exceedingly important for investigating intestinal viromes; therefore, future studies could use metatranscriptomics to study RNA viruses.

    Keywords: Green sea turtle, virome, Metagenomics, Feces, virus

    Received: 06 Sep 2024; Accepted: 07 Jan 2025.

    Copyright: © 2025 Li, Chen, Xia, Zhuang, Cong and Lian. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

    * Correspondence: Hongwei Li, Huizhou University, Huizhou, China

    Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.