AUTHOR=Przymus Piotr , Rykaczewski Krzysztof , Martín-Segura Adrián , Truu Jaak , Carrillo De Santa Pau Enrique , Kolev Mikhail , Naskinova Irina , Gruca Aleksandra , Sampri Alexia , Frohme Marcus , Nechyporenko Alina TITLE=Deep learning in microbiome analysis: a comprehensive review of neural network models JOURNAL=Frontiers in Microbiology VOLUME=15 YEAR=2025 URL=https://www.frontiersin.org/journals/microbiology/articles/10.3389/fmicb.2024.1516667 DOI=10.3389/fmicb.2024.1516667 ISSN=1664-302X