Skip to main content

ORIGINAL RESEARCH article

Front. Microbiol.
Sec. Antimicrobials, Resistance and Chemotherapy
Volume 15 - 2024 | doi: 10.3389/fmicb.2024.1480322
This article is part of the Research Topic Bioinformatics approaches to investigate antimicrobial resistance (AMR) in human, animal and environment View all 4 articles

Distinct Chromosomal Mutation Associated with Cefiderocol Resistance in Acinetobacter baumannii: A Combined Bioinformatics and Mass Spectrometry Approach to unveil and validate the in-vivo acquired Chemoresistance

Provisionally accepted
Lavinia Morosi Lavinia Morosi 1Davide Golzato Davide Golzato 2Linda Bussini Linda Bussini 1Hygerda Guma Hygerda Guma 3Federica Tordato Federica Tordato 1Federica Armanini Federica Armanini 2Zian Asif Zian Asif 3Francesco Carella Francesco Carella 1Paola Morelli Paola Morelli 1Michele Bartoletti Michele Bartoletti 1Giorgio Da Rin Giorgio Da Rin 1Erminia Casari Erminia Casari 1Giuseppe Martano Giuseppe Martano 1Maria Rescigno Maria Rescigno 3Nicola Segata Nicola Segata 2Sara Carloni Sara Carloni 3*Valeria Cento Valeria Cento 1
  • 1 Humanitas Research Hospital, Rozzano, Lombardy, Italy
  • 2 BIOtech, University of Trento, Mattarello, Trentino-Alto Adige/Südtirol, Italy
  • 3 Humanitas University, Rozzano, Italy

The final, formatted version of the article will be published soon.

    Acinetobacter baumannii is a significant public health concern due to the emergence of antibioticresistant strains. Cefiderocol (FDC), a novel siderophore cephalosporin, has shown promise as a lastline treatment for multidrug-resistant Gram-negative bacteria. However, the emergence of in vivo acquired FDC-resistant A. baumannii strains highlights the need for advanced tools to identify resistance-associated genomic mutations and address the challenges of FDC susceptibility testing. This study aims to characterize a novel mutation responsible for FDC resistance in A. baumannii and establish a workflow that integrates genomic and functional analysis for improved antimicrobial resistance monitoring.We examined two carbapenem-resistant A. baumannii isolates from bacteremia cases in two patients (A. baumannii_5406 from patient A and A. baumannii_5577 from patient B). Initial whole-genome sequence BLAST typing identified both as the same strain. However, MIC analysis showed that A. baumannii_5406 was resistant to FDC, while _5577 was not. Further variant calling analysis revealed a novel chromosomal mutation in a gene encoding a TonB-dependent receptor homolog, involved in ferric-siderophore and heme uptake. This mutation causes a premature stop codon, likely impairing the receptor's function. Mass spectrometry confirmed that the FDC-resistant strain exhibited reduced antibiotic uptake and intracellular accumulation.This study demonstrates the utility of combining genomic and functional analyses to detect emerging mutations associated with antibiotic resistance. The variant calling approach, together with LC-MS/MS technology, offers a valuable complement to traditional susceptibility testing in clinical settings, potentially improving the identification and monitoring of FDC resistance in A. baumannii. Additionally, this workflow could aid in the epidemiological tracking of resistant strains.

    Keywords: Acinetobacter, cefiderocol, crab, Variant calling analyisis, LC-MS/MS

    Received: 13 Aug 2024; Accepted: 04 Nov 2024.

    Copyright: © 2024 Morosi, Golzato, Bussini, Guma, Tordato, Armanini, Asif, Carella, Morelli, Bartoletti, Da Rin, Casari, Martano, Rescigno, Segata, Carloni and Cento. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

    * Correspondence: Sara Carloni, Humanitas University, Rozzano, Italy

    Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.