AUTHOR=Romagnoli Camila Lopes , Conceição Emilyn Costa , Machado Edson , Barreto Leonardo Bruno Paz Ferreira , Sharma Abhinav , Silva Natalia Maria , Marques Lucas Evangelista , Juliano Maria Aparecida , da Silva Lourenço Maria Cristina , Digiampietri Luciano Antonio , Suffys Philip Noel , Leão Sylvia Cardoso , Viana-Niero Cristina 

TITLE=Description of new species of Mycobacterium terrae complex isolated from sewage at the São Paulo zoological park foundation in Brazil

JOURNAL=Frontiers in Microbiology

VOLUME=15

YEAR=2024

URL=https://www.frontiersin.org/journals/microbiology/articles/10.3389/fmicb.2024.1335985

DOI=10.3389/fmicb.2024.1335985

ISSN=1664-302X

ABSTRACT=<p>Five mycobacterial isolates from sewage were classified as members of the genus <italic>Mycobacterium</italic> but presented inconclusive species assignments. Thus, the isolates (MYC017, MYC098, MYC101, MYC123 and MYC340) were analyzed by phenotypical, biochemical, matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF-MS) and genomic features to clarify their taxonomic position. Phenotypic analysis and biochemical tests did not distinguish these isolates from other non-pigmented mycobacteria. In contrast, MALDI-TOF MS analysis showed that isolates were not related to any previously described <italic>Mycobacterium</italic> species. Comparative genomic analysis showed values of ANI and dDDH between 81.59–85.56% and 24.4–28.8%, respectively, when compared to the genomes of species of this genus. In addition, two (MYC101 and MYC123) presented indistinguishable protein spectra from each other and values of ANI = 98.57% and dDDH = 97.3%, therefore being considered as belonging to the same species. Phylogenetic analysis grouped the five isolates within the <italic>Mycobacterium terrae</italic> complex (MTC) but in a specific subclade and separated from the species already described and supported by 100% bootstrap value, confirming that they are part of this complex but different from earlier described species. According to these data, we propose the description of four new species belonging to the <italic>Mycobacterium</italic> genus: (i) <italic>Mycobacterium defluvii</italic> sp. nov. strain MYC017<italic><sup>T</sup></italic> (= ATCC TSD-296<italic><sup>T</sup></italic> = JCM 35364<italic><sup>T</sup></italic>), (ii) <italic>Mycobacterium crassicus</italic> sp. nov. strain MYC098<italic><sup>T</sup></italic> (= ATCC TSD-297<italic><sup>T</sup></italic> = JCM 35365T), (iii) <italic>Mycobacterium zoologicum</italic> sp. nov. strain MYC101<italic><sup>T</sup></italic> (= ATCC TSD-298<italic><sup>T</sup></italic> = JCM 35366<italic><sup>T</sup></italic>) and MYC123 (= ATCC BAA-3216 = JCM 35367); and (iv) <italic>Mycobacterium nativiensis</italic> sp. nov. strain MYC340<italic><sup>T</sup></italic> (= ATCC TSD-299<italic><sup>T</sup></italic> = JCM 35368<italic><sup>T</sup></italic>).</p>