Qiang Huang
Hamed Mirjalali
Zeyang Zhou- 1Honeybee Research Institute, Jiangxi Agricultural University, Nanchang, China
- 2Foodborne and Waterborne Diseases Research Center, Research Institute for Gastroenterology and Liver Diseases, Shahid Beheshti University of Medical Sciences, Tehran, Iran
- 3State Key Laboratory of Resource Insects, Southwest University, Chongqing, China
- 4Key Laboratory of Conservation and Utilization of Pollinator Insect of the Upper Reaches of the Yangtze River (Co-construction by Ministry and Province), Ministry of Agriculture and Rural Affairs, Chongqing Normal University, Chongqing, China
Editorial on the Research Topic
Genomic and evolutionary analysis of microsporidian parasites
Microsporidia (phylum Microspora) is a large, diverse group of obligate intracellular, spore-forming parasites related to fungi that can infect animals, including humans (Weiss and Becnel, 2014; Choi and Kim, 2017). Besides clinical importance, microsporidia infection particularly damages the apicultural, fishery, and silk industries. The genomic size of microsporidia varies from 2.3 to 53.1 Mb, which reduction and expansion were driven by multiple mechanisms, such as loss of genes and non-coding regions, gene and segmental duplications, horizontal gene transfers, and so on (Williams et al., 2022). The unique structure of microsporidia, like infecting apparatus polar tube, mitochondrial remnants termed mitosome, prokaryotic-like ribosome and one nucleus or diplokaryon makes them an enigmatic organism. The empirical data on ploidy and recombination remain deficient. The lack of genetic engineering tools and host cell culture further hinders the functional study of the taxa.
The Research Topic on “Genomic and evolutionary analysis of microsporidian parasites” aims to enhance the understanding of functional genomics, evolution, and host-parasite interaction of the microsporidian parasites. The collected 6 original researches are summarized below.
The first article on this topic assembled the genome of Nosema ceranae, a honey bee gut parasite, using long reads (Huang et al.). The compacted 8.8 Mbp genome consists 2,280 protein-coding genes. Various transporters are annotated, supporting the resource transfer from the host. N. ceranae maintained a complete RNAi pathway, which is absent in most microsporidia (Huang, 2018). The identified ATP transporter, polar tube proteins, sporoplasm surface protein, and dicer were essential for the proliferation (Paldi et al., 2010; Rodriguez-Garcia et al., 2018; Huang et al., 2019).
As an intracellular parasite, it is not surprising that N. ceranae regulates host gene expression. N. ceranae regulates the honey bee through signaling peptides or regulatory RNAs (Dolgikh et al., 2019; Shao et al., 2021). Fan et al. find that N. ceranae targets crucial cellular and humoral immune pathways of the honey bees through miRNA. Additionally, N. ceranae derived miRNA modulates the honey bee metabolism, facilitating proliferation and suggesting a cross-kingdom regulation.
Nosema muscidifuracis infects the parasitoid wasp Muscidifurax zaraptor and Muscidifurax raptor. Xiong et al. assemble a high continuity genome with only 28 contigs and develop a tool to diagnose the infection. Heavy infection occurs in the ovary, suggesting maternal-offspring transmission.
High genetic diversity is found in the parasite Pseudokabatana alburnus, infecting the fish Culter alburnus (Weng et al.). The haplotype analysis suggests that P. alburnus have intergenomic variation and recombination. The phylogenetic analysis suggests a minor variation among geographically distinct populations. High genetic diversity is also found in N. ceranae. Wei et al. revealed allelic oscillation through transgenerational analysis. The dynamic of the allele frequency supports the red queen hypothesis during N. ceranae and honey bee co-evolution, where the essential genes regulating ATP binding and apoptosis are constantly under selection.
It is common that the hosts share habitats. Orlansky and Ben-Ami find that the parasite regulates host competition. Daphnia magna competitively excludes Daphnia similis when they coexist in a habitat. Once the parasite Hamiltosporidium tvaerminnensis engages, the competitive advantage of D. magna dramatically decreases. The results suggest that H. tvaerminnensis shapes the host community, allowing the coexistence of the hosts, which provides broader insight into the ecological importance of the parasite.
This topic covers comparative genomics, genetic diversity, and host regulation of microsporidian parasites. We hope this topic provides a state-of-the-art reference to the emerging field of microsporidian genetics and ecology.
Author contributions
All authors listed have made a substantial, direct, and intellectual contribution to the work and approved it for publication.
Conflict of interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Publisher's note
All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.
References
Choi, J., and Kim, S.-H. (2017). A genome tree of life for the fungi kingdom. Proc. Natl. Acad. Sci. U.S.A. 114, 9391–9396. doi: 10.1073/pnas.1711939114
Dolgikh, V. V., Tsarev, A. A., Timofeev, S. A., and Zhuravlyov, V. S. (2019). Heterologous overexpression of active hexokinases from microsporidia Nosema bombycis and Nosema ceranae confirms their ability to phosphorylate host glucose. Parasitol. Res. 118, 1511–1518. doi: 10.1007/s00436-019-06279-w
Huang, Q. (2018). Evolution of Dicer and Argonaute orthologs in microsporidian parasites. Infect. Genet. Evol. 65, 329–332. doi: 10.1016/j.meegid.2018.08.011
Huang, Q., Li, W., Chen, Y., Retschnig-Tanner, G., Yanez, O., Neumann, P., et al. (2019). Dicer regulates Nosema ceranae proliferation in honey bees. Insect Mol. Biol. 28, 74–85. doi: 10.1111/imb.12534
Paldi, N., Glick, E., Oliva, M., Zilberberg, Y., Aubin, L., Pettis, J., et al. (2010). Effective gene silencing in a microsporidian parasite associated with honeybee (Apis mellifera) colony declines. Appl. Environ. Microbiol. 76, 5960–5964. doi: 10.1128/AEM.01067-10
Rodriguez-Garcia, C., Evans, J. D., Li, W., Branchiccela, B., Li, J. H., Heerman, M. C., et al. (2018). Nosemosis control in European honey bees Apis mellifera by silencing the gene encoding Nosema ceranae polar tube protein 3. J. Exp. Biol. 221(Pt 19), jeb184606. doi: 10.1242/jeb.184606
Shao, S. S., Yan, W. Y., and Huang, Q. (2021). Identification of novel miRNAs from the microsporidian parasite Nosema ceranae. Infect. Genet. Evol. 93, 104930. doi: 10.1016/j.meegid.2021.104930
Weiss, L. M., and Becnel, J. J. (2014). Microsporidia: Pathogens of Opportunity. Hoboken, NJ: Wiley-Blackwell. doi: 10.1002/9781118395264
Keywords: microsporidia, intracellular parasite, spore forming, regulatory RNA, recombination, competition
Citation: Huang Q, Mirjalali H and Zhou Z (2023) Editorial: Genomic and evolutionary analysis of microsporidian parasites. Front. Microbiol. 14:1248661. doi: 10.3389/fmicb.2023.1248661
Received: 27 June 2023; Accepted: 28 June 2023;
Published: 07 July 2023.
Edited and reviewed by: John R. Battista, Louisiana State University, United States
Copyright © 2023 Huang, Mirjalali and Zhou. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Qiang Huang, cWlhbmctaHVhbmcmI3gwMDA0MDtsaXZlLmNvbQ==