AUTHOR=Liu Su , Li Guoqing , Zhu Yuanchao , Xu Chang , Yang Qi , Xiong Ao , Weng Jian , Yu Fei , Zeng Hui 

TITLE=Analysis of gut microbiome composition, function, and phenotype in patients with osteoarthritis

JOURNAL=Frontiers in Microbiology

VOLUME=13

YEAR=2022

URL=https://www.frontiersin.org/journals/microbiology/articles/10.3389/fmicb.2022.980591

DOI=10.3389/fmicb.2022.980591

ISSN=1664-302X

ABSTRACT=<p>Gut microbiome (GMB) disturbance can induce chronic low-grade inflammation, which is closely related to the occurrence and development of osteoarthritis (OA). However, the relationship between GMB and OA remains unclear. In this study, we collected stool samples from OA patients and healthy people, and performed Alpha diversity, Beta diversity, MetaStat, and LEfSe analysis by 16S rRNA sequencing to find out the species with significant difference between the two groups. Random forest analysis was performed to find out biomarkers that could distinguish between OA patients and healthy people. PICRUSt and Bugbase analysis were used to compare the difference in functions and phenotypes. Multivariate linear regression analysis (MaAsLin) was used to adjust for gender, age, and body mass index (BMI). The results showed that there was a significant difference in the overall composition of GMB between the two groups (<italic>p</italic> = 0.005). After adjusting for gender, age, and BMI, we found that p_<italic>Bacteroidota</italic> (<italic>Q</italic> = 0.039), c_<italic>Bacteroidia</italic> (<italic>Q</italic> = 0.039), and o_<italic>Bacteroidales</italic> (<italic>Q</italic> = 0.040) were enriched in the OA group, while s_<italic>Prevotella_copri</italic> (<italic>Q</italic> = 0.001) was enriched in the healthy control group. <italic>Prevotella</italic> could distinguish between OA patients and healthy people with a better diagnostic power (AUC = 77.5%, <italic>p</italic> &lt; 0.001, 95% CI: 66.9–88.1%). The functions of DNA transcription, amino acid metabolism (including histidine, lysine, and isoleucine), ATP metabolism, and phospholipid metabolism significantly decreased, while glucose metabolism, protein acetylation, and aspartate kinase activity significantly increased in the OA group. In terms of phenotypes, we found that the relative abundance of aerobic (<italic>p</italic> = 0.003) and Gram-negative (<italic>p</italic> &lt; 0.001) was higher in the OA group, while contains mobile elements (<italic>p</italic> = 0.001) and Gram-positive (<italic>p</italic> &lt; 0.001) were higher in the healthy control group. Our study preliminarily demonstrated that there were differences in the composition, function, and phenotype of GMB in stool samples between OA patients and healthy people, which provided a novel perspective on further study in OA.</p>