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ORIGINAL RESEARCH article

Front. Microbiol., 19 May 2022
Sec. Food Microbiology
This article is part of the Research Topic Insights in Food Microbiology: 2021 View all 14 articles

Bacterial Resistance Toward Antimicrobial Ionic Liquids Mediated by Multidrug Efflux Pumps

Tobias GundolfTobias Gundolf1Roland Kalb,Roland Kalb2,3Peter Rossmanith,Peter Rossmanith3,4Patrick Mester
Patrick Mester4*
  • 1Christian Doppler Laboratory for Monitoring of Microbial Contaminants, Unit for Food Microbiology, Department of Veterinary Public Health and Food Science, University of Veterinary Medicine, Vienna, Austria
  • 2Proionic Production of Ionic Substances GmbH, Grambach, Austria
  • 3Joint BioEnergy Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, United States
  • 4Unit for Food Microbiology, Department of Veterinary Public Health and Food Science, University of Veterinary Medicine, Vienna, Austria

The effective elimination of foodborne pathogens through cleaning and disinfection measures is of great importance to the food processing industry. As food producers rely heavily on disinfectants to control pathogenic bacteria in their facilities, the increasing spread of tolerant, often even multidrug resistant, strains is of particular concern. In addition to efforts to prevent or at least reduce development and spread of strains resistant to disinfectants and sanitizers, there is an urgent need for new and effective antimicrobials. One new class of promising antimicrobials is ionic liquids (ILs), which have been reported to be effective against resistant strains as they interact with bacterial cells in multiple ways, but investigations of their effectivity against MDR bacteria or specific defense mechanisms are still limited. This study investigates the role of multidrug efflux pumps of the Resistance Nodulation-Division family (RND) on the resistance of bacterial pathogens Escherichia coli and Salmonella enterica serovar Typhimurium toward 10 antimicrobial active ILs. Results reveal that, while known structure–activity relationships (SARs), such as the side-chain effect, were found for all strains, antimicrobial ILs with one elongated alkyl side chain were significantly affected by the RND efflux pump, highlighting the importance of efflux pumps for future IL toxicity studies. In case of antimicrobial ILs with multiple side chains and different cationic head groups, two ILs were identified that were highly active against all investigated strains with little to no effect of the efflux pump. The results obtained in this study for RND efflux pumps can serve as a starting point for identifying and designing antimicrobial ILs as effective biocides against MDR bacteria.

Introduction

Humanity’s history is a continuous battle between us and microbial pathogens and for the most part, we were on the losing side with bacterial and viral infections being among the major causes of morbidity and mortality worldwide. Thanks to the development and improvement of sanitation, hygiene practices and especially discovery of disinfectants, antibiotics, and vaccinations since the early 20th century, deaths from infectious diseases have declined markedly. This decline can be considered one of the biggest success stories in human history (CDC on infectious diseases in the United States: 1900-99, 1999) but is under pressure due to a dramatic increase of multidrug-resistant species (Andersson and Hughes, 2014; Qiao et al., 2018). Disinfectants play an important role in maintaining acceptable health standards by significantly reducing microbial loads as well as reducing, if not eliminating, pathogens (Tezel and Pavlostathis, 2015). Quaternary ammonium compounds (QAC) are among the most commonly used disinfectants in a variety of different industries including hospital, water, cosmetic, and the food industry, where bacteria are often exposed to disinfectants through the entire food chain (Buffet-Bataillon et al., 2016; Martínez-Suárez et al., 2016; Duze et al., 2021). Upon continued exposure, bacteria can adapt to biocides, a phenomenon known as biocide resistance (Poole, 2002; Andersson and Hughes, 2014; Grande Burgos et al., 2016; Gadea et al., 2017), which can increase the ability of pathogens to persist in food environments (Martínez-Suárez et al., 2016; Chmielowska et al., 2021; Guidi et al., 2021) and can be transferred from one species to another in the food environment (Hansen et al., 2007; Szmolka and Nagy, 2013). Bacteria can elicit non-specific mechanisms of resistance mediated by efflux pumps, which can accommodate a diversity of chemical structures as substrates including biocides and antibiotics (Poole, 2002, 2004, 2005, 2007; Grande Burgos et al., 2016; Shafaati et al., 2016).

Bacterial efflux pumps actively transport many antimicrobials and/or antibiotics out of the cell and are major contributors to the intrinsic resistance of bacteria (Putman et al., 2000; Tezel and Pavlostathis, 2015; Dam et al., 2018). While some efflux pumps have narrow substrate specificity, many transport a wide range of structurally dissimilar substrates and are known as multidrug resistance (MDR) efflux pumps. There are well-studied examples of MDR efflux pumps that are present in all bacteria, and new pumps that export antibiotics continue to be described. There are five classes of MDR efflux pumps: the ATP-binding cassette family (ABC), the Major Facilitator Superfamily (MFS), the Multidrug and Toxic Compound Extrusion family (MATE), the Resistance Nodulation-Division family (RND), and the Small-Multidrug Resistance family (SMR). Family division is based on the number of structural components that compromise each pump, the number of membranes they span, their substrate specificity, and the energy source used (Putman et al., 2000; Tezel and Pavlostathis, 2015). Whereas ABC, MATE, MFS, and SMR efflux pumps are widely distributed in both Gram-negative and Gram-positive species, the RND transporter type is exclusively found in Gram-negative bacteria, as it forms a tripartite complex that span from the inner to the outer membranes and is one of the best-characterized clinically relevant MDR efflux transporter type. Well-studied examples include the multidrug efflux pump AcrB in Escherichia coli and MexB in Pseudomonas aeruginosa. RND pumps, such as AcrB, are homo-trimers that reside in the inner membrane and form a tripartite complex with a periplasmic adaptor protein, such as AcrA and an outer-membrane channel, such as TolC (Chetri et al., 2019). Collectively, it is clear that there is an urgent need to identify novel antibacterial agents and biocides to combat the plethora of resistant bacterial genotypes (Andersson and Hughes, 2014; Bodro et al., 2014; Qiao et al., 2018; Prudêncio et al., 2020).

One promising new chemical class in this regard has been ionic liquids (ILs). Ionic liquids, defined as organic salts with a melting points below 100°C (Wasserscheid and Welton, 2008), have attracted substantial attention from both academia and industry due to their unique physiochemical properties and high tuneability (Rogers and Seddon, 2003; Aschenbrenner et al., 2009; Cevasco and Chiappe, 2014) including applications in medicine and as pharmaceuticals. In this context, ILs are applied in mostly one of two ways. Either as an antimicrobial active agent itself, as components of drug or drug delivery systems and as solvents in drug synthesis (Ferraz et al., 2011; Prudêncio et al., 2020). So-called API-ILs facilitate the incorporation of active pharmaceutical ingredients (API) into an IL form (Hough et al., 2007; Ferraz et al., 2011; Mester et al., 2016; Bromberger et al., 2020). One advantage of ILs, in comparison to other antimicrobials, is that they act on bacterial cells in multiple ways. Previous studies have demonstrated that ILs are (i) interacting with bacterial membrane and wall (Mester et al., 2016; Borkowski et al., 2017); (ii) disrupting cell integrity (Venkata Nancharaiah et al., 2012; Cook et al., 2019); (iii) destabilizing proteins and hindering their enzymatic activity (Mester et al., 2019; Tarannum et al., 2019; Bromberger et al., 2020); (iv) dysregulating bacterial metabolism (Yu et al., 2016; Cłapa et al., 2021); (v) triggering oxidative stress response (Yu et al., 2016); and (vi) leading to DNA damage (Kowalczyk et al., 2018). Consequently, ILs can be considered versatile antimicrobials of great potential with a wide spectrum of antibacterial mechanisms, thus potentially having an advantage against MDR resistant bacteria.

Nevertheless, there is still only a very limited amount of studies investigating the effectivity against MDR bacteria and to understand the impact of different bacterial defense strategies and mechanisms. What could be demonstrated in previous studies is a significant difference of antimicrobial IL efficacy between Gram-positive and Gram-negative bacteria. This difference is mainly attributed to the presence of outer membrane and lipopolysaccharide (LPS) layer in Gram-negative microorganisms (Cole et al., 2011; Weyhing-Zerrer et al., 2017). Due to its hydrophilic nature, LPS can prevent large, hydrophobic compounds from passing through the membrane and the impact of the LPS structure on overall IL susceptibility has been previously demonstrated (Gundolf et al., 2018; Kowalczyk et al., 2018). Interestingly, the influence of bacterial efflux pumps, one of the most important resistance mechanism toward antimicrobials as well as antibiotics, on antimicrobial IL efficacy has been scarcely investigated up to this point. Concerning antimicrobial ILs, only few studies investigated the impact of efflux pumps on bacterial resistance. For the Gram-positive pathogen Listeria monocytogenes, the SMR transporter QacH was shown to significantly increase the resistance of bacterial cells against classic QAC-based biocides as well as ILs with long alkyl side chains (Mester et al., 2015). For the Gram-negative bacterium Enterobacter lignolyticus, an efficient transport of [C2mim]+ cations outside the cell was found for efflux pump from a MFS encoded by the eilA gene (Ruegg et al., 2014).

Taken together, it is clear that the role of bacterial efflux pumps in regard to antimicrobial active ILs is understudied. Consequently, the aim of our study was to determine the impact of some of the most important efflux pump types on susceptibility of bacterial pathogens to antimicrobial ILs, which could subsequently influence the future design of these substances. To accomplish this objective, we investigated the impact of the multidrug efflux pump belonging the RND on the resistance of the bacterial pathogens E. coli and Salmonella enterica serovar Typhimurium toward a set of 10 antimicrobial active ILs.

Materials and Methods

Ionic Liquids and Other Chemical Substances

QACs: benzalkonium chloride (BC), benzethonium chloride (BZ), cetylpyridinium chloride (CP), cetyltrimethylpyridinium chloride (CTAB), and domiphen bromide (DB) were purchased from Sigma-Aldrich (Steinheim, Germany).

The ILs used in this study were either (a) provided by Proionic GmbH (Grambach, Austria) with a nominal purity of >98%, (b) purchased from Iolitec (Ionic Liquid Technologies GmbH, Heilbronn, Germany) with a nominal purity of >98%, or (c) synthesized in our laboratory, according to the CBILS© route (CBILS is a registered trademark of Proionic GmbH; Kalb et al., 2005, 2016). The following ILs were investigated as: ILs with one elongated alkyl side chain 1-decyl-3-methylimidazolium chloride ([C10mim][Cl];a), 1-dodecyl-3-methylimidazolium chloride ([C12mim][Cl];b), 1-methyl-3-tetradecylimidazolium chloride ([C14mim][Cl];b), 1-hexadecyl-3-methylimidazolium chloride ([C16mim][Cl];b) trimethyldecylammonium chloride ([TMC10A][Cl];c), trimethylhexadecylammonium chloride ([TMC16A][Cl];c). ILs with two elongated alkyl side chains dioctyldimethylammonium chloride ([DC8DMA][Cl];c) and 1-3-didecyl-2-imidazolium chloride ([C10C10im][Cl];b). ILs with three elongated alkyl side chains trioctylmethylammonium chloride ([TC8MA][Cl];a) and trioctylmethylphosphonium chloride ([TMC10P][Cl];c).

Bacterial Strains and Culture Conditions

Escherichia coli BW25113 (wild-type), E. coli JW0451-2 (ΔacrB), E. coli JW0452-3 (ΔacrA), and E. coli JW5503-1 (ΔtolC) were obtained from the Coli Genetic Stock Centre (CGSC, Yale University) and are part of the Keio collection of E. coli K-12 single-gene knockout mutants (Baba et al., 2006). The Keio collection contains a set of precisely defined, single-gene deletions of all nonessential genes in E. coli K-12, which enables systematic analyses of unknown gene functions and gene regulatory networks but also for genome-wide testing of mutational effects in a common strain background, E. coli K-12 BW25113. Open-reading frame coding regions were replaced with a kanamycin cassette flanked by FLP recognition target sites by using a one-step method for inactivation of chromosomal genes and primers designed to create in-frame deletions upon excision of the resistance cassette (Baba et al., 2006). S. enterica serovar Typhimurium ATCC 14028s (wild-type) and S. enterica serovar Typhimurium NKS148 (ΔacrB) were kindly provided by Kunihiko Nishino (Osaka University; Horiyama et al., 2010; Yamasaki et al., 2013). A detailed description of the respective strains is provided in the supplement section (Supplementary Table S1). Bacterial strains were grown overnight in tryptone soy broth supplemented with 0.6% (w/v) yeast extract (Oxoid™, Hamsphire, United Kingdom) and 30 μg/ml kanamycin at 37°C, with the exception of the wild-type strain E. coli BW25113 and the S. enterica strains that lack the kanamycin resistance cassette. Twenty-four hours growth curves were performed in 96-well microtiter plates (Corning B.V Life Sciences, Amsterdam, Netherlands) on measuring their optical densities every hour at a wavelength of 610 nm in a TECAN F100 microplate reader (Tecan Austria GmbH., Groeding, Austria). Bacteria were maintained at −80°C using Microbank™ technology (Pro-Lab Diagnostics, Richmond Hill, Canada).

Minimal Inhibitory Concentration Assessment

MICs of the test chemicals (ILs, QACs, NaCl, KH2PO4, ethanol, and urea as well as pH) were assessed by applying the serial 2-fold dilution microtiter plate method in TSB-Y medium (Morrissey et al., 2009). In order to create a constant cell status for each experiment, 1 ml aliquots of the respective overnight cultures were transferred into 9 ml of fresh TSB-Y medium (1:10 dilution) and incubated for 3 h at 37°C to ensure that cells were in a logarithmic growth phase. Subsequently, each well, which contained a serial diluted antimicrobial substance (dilution 1:2), was inoculated with 5 × 105 CFU of the respective bacterial cells. After inoculation with the respective bacteria, absorbance of the 96-well microtiter plates (Corning B.V Life Sciences, Amsterdam, Netherlands) was measured at a wavelength of 610 nm in a TECAN F100 microplate reader (Tecan Austria GmbH, Groeding, Austria) to monitor for any possible interference by the antimicrobial substances. The microtiter plates were then incubated for 24 h at the 37°C and bacterial growth assessed by measuring the absorbances at 610 nm. The MIC was defined as the lowest concentration of the tested antimicrobial substance where no bacterial growth could be measured after 24 h. Results are presented as mean MICs and upper and lower limits of 95% CIs of at least three experiments performed on different days. Each experiment included positive (bacterial growth control without ILs) and negative controls (medium without the addition of bacteria).

Results and Discussion

Influence of Efflux Pumps on Bacterial Growth and Susceptibility to Chemical Substances

This study investigates the role of efflux pumps deletions on the susceptibility of four E. coli strains (wild type and three different single-gene deletion mutants), as well as Salmonella NKS (Figure 1A) toward antimicrobial ILs. For E. coli, three efflux pump deletion strains (ΔacrA, ΔacrB, and ΔtolC) are missing one part of the tripartite complex of the RND transporter family. The three different mutant strains were included in this study to investigate possible differences concerning IL susceptibility if only one part of the tripartite complex is missing. For S. enterica, two strains (wild type and RND deletion mutant ΔacrB) were studied in order to investigate possible susceptibility differences between the two species.

FIGURE 1
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Figure 1. Mean minimal inhibitory concentration (MIC) values for quaternary ammonium compounds (QACs; BC, BE, CP, CTAB, and DB) including upper and lower limits of 95% CIs of the respective Salmonella enterica (A) and Escherichia coli (B) strains after 24 h incubation at 37°C.

To investigate if efflux pump deletion affects bacterial growth, the growth of wild type and deletions mutants was monitored for 24 h while measuring cell density hourly. No significantly impaired growth was observed for any of the four deletion strains compared to their respective wild type (data not shown). Further, strains were subjected to six hydrophilic chemical substances as an additional control to test strain viability/vitality. No significant differences between the wild-type strains and the deletion mutants were found indicating that the efflux strains were per se not less robust compared to the wild-type strains and the results for QACS and ILs can be interpreted accordingly (Table 1).

TABLE 1
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Table 1. Mean MIC values (bold) for chemicals including upper and lower limits of 95% CIs (in brackets) of the respective Salmonella enterica and Escherichia coli strains after 24 h incubation at 37°C.

As mentioned in the introduction, one of the criteria to investigate the efflux pumps investigated in this study was their reported connection to QAC resistance. It therefore comes as no surprise that the wild-type E. coli and S. enterica had significantly higher MIC values for each of the five QACs than the respective deletion mutants (Figure 1).

Although there were slight differences regarding the susceptibilities for the different strains and QACs, on average, the wild-type strains had a four times higher MIC compared to the deletion mutants with the highest observed for BC (6x) and the lowest for CP (2x). In conclusion, the results confirmed the influence of the studied efflux pumps on the susceptibility of the studied pathogens toward QACS. Consequently, the chosen bacterial strains can serve as models for studying the antimicrobial effect of ILs.

Influence of Efflux Pumps on the Susceptibility to ILs

ILs With One Side Chain

Imidazolium ([Cnmim][Cl]) and ammonium-based ([TMCnA][Cl]) ILs with varying alkyl side chain lengths were tested as representatives of ILs with one alkyl side chain (Figure 2).

FIGURE 2
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Figure 2. Mean MIC values for antimicrobial ionic liquids (ILs) with one elongated alkyl side chain [C10mim][Cl] (A), [TMC10A][Cl] (B), [C12mim][Cl] (C), [C14mim][Cl] (D), [C16mim][Cl] (E), and [TMC16A][Cl] (F) including upper and lower limits of 95% CIs for the respective S. enterica and E. coli strains after 24 h incubation at 37°C.

In case of S. enterica wild type and the ΔacrB deletion mutant, for each of the six ILs with one elongated side chain, a significant higher resistance of the wild type compared to the deletion mutant was found. On average, the wild-type strain had a 4x higher MIC than the ΔacrB deletion mutant, with the highest observed for [C14mim][Cl] (8x) and the lowest for [C16mim][Cl] (2x).

In case, of E. coli very similar results for all three deletion mutants were obtained and will be discussed together. As was the case for S. enterica, the wild-type E. coli was significantly more resistant against ILs with one side chain than the efflux pump deletion mutants, all of which lack one gene necessary for a functional RND transporter. On average the wild type was able to withstand 4.3 times higher IL concentrations with the biggest differences observed for [C12mim][Cl] (6.5x) and the smallest for [C16mim][Cl] (1.7x).

Taken together for both bacterial species and all investigated efflux pump deletion mutants, the obtained results are quite similar to the results obtained for “classic” QACs.

ILs With Multiple Side Chains

In addition to antimicrobial ILs containing one elongated alkyl side chain, cations with multiple side chains have also been reported to have good antimicrobial activity and were thus included in the present study. The investigation included two ammonium-based ILs with two ([DC8DMA][Cl]) and three octyl side chains ([TC8MA][Cl]), one phosphonium based IL also with three octyl side chains ([TC8MP][Cl]), and one imidazolium based IL with two decyl side chains ([C10C10im][Cl]) and the general trends regarding IL antimicrobial activity were confirmed. With an increasing number of alkyl side chains of identical length, the antimicrobial activity is also increasing (Figures 2A, 3) which was observed for both bacterial specials and all strains. However, in case of the efflux pump deletion mutants, different results were obtained.

FIGURE 3
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Figure 3. Mean MIC values for antimicrobial ILs with two elongated alkyl side chains [DC8DMA][Cl] (A) and [C10 C10im][Cl] (B) and three elongated alkyl side chains [TC8MA][Cl] (C) and [TC8MP][Cl] (D) including upper and lower limits of 95% CIs for the respective S. enterica and E. coli strains after 24 h incubation at 37°C.

In case of S. enterica, the results for ILs with multiple side chains were found to be similar to those for ILs with one side chain and the QACs. For all ILs with multiple side chains, an average 3.1x times higher MIC of the wild type compared to the ΔacrB deletion mutant was found, with the highest observed for [DC8DMA][Cl] (5.9x) and the lowest for [C10C10im][Cl] (1.4x; Figure 3).

In case of E. coli, the results for ILs with multiple side chains were quite different for the different ILs and thus will discussed separately. In case of [DC8DMA][Cl], a significantly 11x higher MIC of the wild type was observed, demonstrating the impact of all three efflux pump types on the resistance against the IL. In case of [TC8MA][Cl], which has a similar cation core with one additional octyl side chain, a higher MIC (2x) for the wild type was observed in comparison with the three RND deletion mutants. Interestingly in case of [TC8MP][Cl], the MIC for all E. coli strains was around 6 mg/l with no significant differences between the four strains. Thus, demonstrating for the first time no significant effect on bacterial resistance against this antimicrobial active IL by the RND transporter. From these results, it seems as either the efflux pumps of E. coli are not able to remove the ILs from the cell inside, or the ILs have a different mode of action not acting inside the cell but for instance directly interact with the cell membrane as has been previously reported (Mester et al., 2016, 2019). Speaking against this hypothesis are the findings for S. enterica, as a clear and significant effect of the efflux pump was determined. As both bacterial species are Gram-negative bacteria with a similar cell membrane structure, it is more likely that the ILs act intracellularly and that the E. coli RND Transporter is less effective in transporting them out of the cell.

Similar results as for [TC8MP][Cl] were also found in case of the IL [C10C10im][Cl] containing two decyl side chains. In general, [C10C10im][Cl] was found to be the IL with the highest antimicrobial activity showing an average MIC of 1.8 mg/L, being even lower than the MICs of all QACs that are established biocides. Additionally, while all QACs as well as structurally similar ILs ([C10mim][Cl] and [DC8DMA][Cl]) are affected by the RND transporter in both bacterial species, for [C10C10im][Cl] no differences between the four E. coli strains and only a marginal effect for S. enterica (1.4x higher MIC) were found. These results demonstrate the possibility to design and obtain ILs that are not affected by multidrug efflux pumps belonging to the RND transporter type.

Conclusion

This study aimed at investigating the effect of one of the most important multidrug efflux pump type belonging to the RND, which is associated with biocide and antibiotic resistance, in regard to the antimicrobial activity of ILs. By comparing the activity of antimicrobial ILs against both the wild-type strains and the respective efflux pump deletion mutants in two different bacterial species, the impact of the efflux pump could be directly assessed.

Investigating 10 different antimicrobial ILs with different cation structures enabled the identification of structure–activity relationships (SARs) in regard to efflux pump impact. The results of this study confirmed known SARs, such as the side-chain effect, for all tested strains as well as the general effect of efflux pumps. For all antimicrobial ILs with one elongated alkyl side chain, a clear and significant effect of the efflux pump in both species could be determined, regardless of the length of the side chain, the cationic head group, or the MIC. These results demonstrate that such ILs affect bacterial cells mostly intracellularly, where ILs have been reported to act in multiple ways including destabilizing proteins and hindering their enzymatic activity (Mester et al., 2019), increasing oxidative stress (Yu et al., 2016), or leading to DNA damage (Kowalczyk et al., 2018). In contrast, for ILs with multiple side chains, this study could identify for the first antimicrobial ILs that were not affected by the multidrug efflux pump. While for ILs with two and three octyl side chains ([DC8DMA][Cl] and [TC8MA][Cl]) the efflux pump significantly increased the MIC for both strains, in case of the structurally similar [TC8MP][Cl] no effect could be observed for E. coli. The antimicrobial IL that was found to be least affected by the efflux pump was [C10C10im][Cl], which was also the one with the highest antimicrobial activity of all investigated ILs, making it the most promising candidate as a novel biocide against multidrug-resistant bacterial species. At this point, it cannot be ultimately determined if the reduced effect of the efflux pump is either due to a different mode of action of these ILs, for example, a direct interaction with the cell membrane (Mester et al., 2016), or if the efflux pump is simply less effective to transport the ILs out of the cell. To further improve the antimicrobial activity, new ILs with the [C10C10im]+ cation as a lead structural motif can be designed and should be investigated against a broader set of resistant bacterial strains from clinical and environmental sources.

Overall, this study demonstrated the effect of efflux pumps belonging to the RND as an intrinsic defense mechanism of Gram-negative bacteria against antimicrobial ILs. The results demonstrate that by studying the effect of individual efflux pumps, structural motifs of antimicrobial ILs can be identified that are not affected by these efflux pumps. As this study focused solely on RND efflux pumps, future studies should include a more diverse set of efflux pump types to investigate possible similarities or differences in regard to the antimicrobial activity of biocidal ILs. Starting from the identified structural motifs in this study, the unique tuneability of ILs can be utilized for the development of effective biocides against MDR bacteria.

Data Availability Statement

The original contributions presented in the study are included in the article/Supplementary Material; further inquiries can be directed to the corresponding author.

Author Contributions

TG, PR, and PM: conceptualization. TG and PM: methodology. TG: formal analysis and investigation. PR and RK: resources. TG, PR, RK, and PM: data curation and writing—review and editing. TG and PM: writing. PM: supervision and project administration. PR: funding acquisition. All authors contributed to the article and approved the submitted version.

Funding

The financial support by the Austrian Federal Ministry for Digital and Economic Affairs and the National Foundation of Research, Technology and Development is gratefully acknowledged.

Conflict of Interest

RK is employed by Proionic GmbH.

The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Publisher’s Note

All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.

Acknowledgments

We would like to thank Bernhard Rauch and Birgit Bromberger for their support.

Supplementary Material

The Supplementary Material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/fmicb.2022.883931/full#supplementary-material

References

Andersson, D. I., and Hughes, D. (2014). Microbiological effects of sublethal levels of antibiotics. Nat. Rev. Microbiol. 12, 465–478. doi: 10.1038/nrmicro3270

CrossRef Full Text | Google Scholar

Aschenbrenner, O., Supasitmongkol, S., Taylor, M., and Styring, P. (2009). Measurement of vapour pressures of ionic liquids and other low vapour pressure solvents. Green Chem. 11, 1217–1221. doi: 10.1039/B904407H

CrossRef Full Text | Google Scholar

Baba, T., Ara, T., Hasegawa, M., Takai, Y., Okumura, Y., Baba, M., et al. (2006). Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2:2006.0008. doi: 10.1038/msb4100050

PubMed Abstract | CrossRef Full Text | Google Scholar

Bodro, M., Gudiol, C., Garcia-Vidal, C., Tubau, F., Contra, A., Boix, L., et al. (2014). Epidemiology, antibiotic therapy and outcomes of bacteremia caused by drug-resistant ESKAPE pathogens in cancer patients. Support Care Cancer 22, 603–610. doi: 10.1007/s00520-013-2012-3

PubMed Abstract | CrossRef Full Text | Google Scholar

Borkowski, A., Kowalczyk, P., Czerwonka, G., Cieśla, J., Cłapa, T., Misiewicz, A., et al. (2017). Interaction of quaternary ammonium ionic liquids with bacterial membranes – studies with Escherichia coli R1–R4-type lipopolysaccharides. J. Mol. Liq. 246, 282–289. doi: 10.1016/j.molliq.2017.09.074

CrossRef Full Text | Google Scholar

Bromberger, B., Sommer, J., Robben, C., Trautner, C., Kalb, R., Rossmanith, P., et al. (2020). Evaluation of the antimicrobial activity of pyrithione-based ionic liquids. Sep. Purif. Technol. 251:117309. doi: 10.1016/j.seppur.2020.117309

CrossRef Full Text | Google Scholar

Buffet-Bataillon, S., Tattevin, P., Maillard, J.-Y., Bonnaure-Mallet, M., and Jolivet-Gougeon, A. (2016). Efflux pump induction by quaternary ammonium compounds and fluoroquinolone resistance in bacteria. Future Microbiol. 11, 81–92. doi: 10.2217/fmb.15.131

PubMed Abstract | CrossRef Full Text | Google Scholar

CDC on infectious diseases in the United States: 1900-99 (1999). Popul. Dev. Rev. 25, 635–640. doi: 10.1111/j.1728-4457.1999.00635.x

CrossRef Full Text | Google Scholar

Cevasco, G., and Chiappe, C. (2014). Are ionic liquids a proper solution to current environmental challenges? Green Chem. 16, 2375–2385. doi: 10.1039/C3GC42096E

CrossRef Full Text | Google Scholar

Chetri, S., Bhowmik, D., Paul, D., Pandey, P., Chanda, D. D., Chakravarty, A., et al. (2019). AcrAB-TolC efflux pump system plays a role in carbapenem non-susceptibility in Escherichia coli. BMC Microbiol. 19:210. doi: 10.1186/s12866-019-1589-1

PubMed Abstract | CrossRef Full Text | Google Scholar

Chmielowska, C., Korsak, D., Szuplewska, M., Grzelecka, M., Maćkiw, E., Stasiak, M., et al. (2021). Benzalkonium chloride and heavy metal resistance profiles of listeria monocytogenes strains isolated from fish, fish products and food-producing factories in Poland. Food Microbiol. 98:103756. doi: 10.1016/j.fm.2021.103756

PubMed Abstract | CrossRef Full Text | Google Scholar

Cłapa, T., Michalski, J., Syguda, A., Narożna, D., van Oostrum, P., and Reimhult, E. (2021). Morpholinium-based ionic liquids show antimicrobial activity against clinical isolates of Pseudomonas aeruginosa. Res. Microbiol. 172:103817. doi: 10.1016/j.resmic.2021.103817

PubMed Abstract | CrossRef Full Text | Google Scholar

Cole, M. R., Li, M., El-Zahab, B., Janes, M. E., Hayes, D., and Warner, I. M. (2011). Design, synthesis, and biological evaluation of β-lactam antibiotic-based imidazolium- and pyridinium-type ionic liquids. Chem. Biol. Drug Des. 78, 33–41. doi: 10.1111/j.1747-0285.2011.01114.x

PubMed Abstract | CrossRef Full Text | Google Scholar

Cook, K., Tarnawsky, K., Swinton, A. J., Yang, D. D., Senetra, A. S., Caputo, G. A., et al. (2019). Correlating lipid membrane permeabilities of imidazolium ionic liquids with their cytotoxicities on yeast, bacterial, and mammalian cells. Biomol. Ther. 9:251. doi: 10.3390/biom9060251

PubMed Abstract | CrossRef Full Text | Google Scholar

Dam, S., Pagès, J.-M., and Masi, M. (2018). Stress responses, outer membrane permeability control and antimicrobial resistance in enterobacteriaceae. Microbiology 164, 260–267. doi: 10.1099/mic.0.000613

PubMed Abstract | CrossRef Full Text | Google Scholar

Duze, S. T., Marimani, M., and Patel, M. (2021). Tolerance of listeria monocytogenes to biocides used in food processing environments. Food Microbiol. 97:103758. doi: 10.1016/j.fm.2021.103758

PubMed Abstract | CrossRef Full Text | Google Scholar

Ferraz, R., Branco, L. C., Prudencio, C., Noronha, J. P., and Petrovski, Z. (2011). Ionic liquids as active pharmaceutical ingredients. ChemMedChem 6, 975–985. doi: 10.1002/cmdc.201100082

CrossRef Full Text | Google Scholar

Gadea, R., Fernández Fuentes, M. Á., Pérez Pulido, R., Gálvez, A., and Ortega, E. (2017). Effects of exposure to quaternary-ammonium-based biocides on antimicrobial susceptibility and tolerance to physical stresses in bacteria from organic foods. Food Microbiol. 63, 58–71. doi: 10.1016/j.fm.2016.10.037

PubMed Abstract | CrossRef Full Text | Google Scholar

Grande Burgos, M. J., Fernández Márquez, M. L., Pérez Pulido, R., Gálvez, A., and Lucas López, R. (2016). Virulence factors and antimicrobial resistance in Escherichia coli strains isolated from hen egg shells. Int. J. Food Microbiol. 238, 89–95. doi: 10.1016/j.ijfoodmicro.2016.08.037

PubMed Abstract | CrossRef Full Text | Google Scholar

Guidi, F., Orsini, M., Chiaverini, A., Torresi, M., Centorame, P., Acciari, V. A., et al. (2021). Hypo-and hyper-virulent listeria monocytogenes clones persisting in two different food processing plants of Central Italy. Microorganisms 9, 1–21. doi: 10.3390/microorganisms9020376

PubMed Abstract | CrossRef Full Text | Google Scholar

Gundolf, T., Rauch, B., Kalb, R., Rossmanith, P., and Mester, P. (2018). Influence of bacterial lipopolysaccharide modifications on the efficacy of antimicrobial ionic liquids. J. Mol. Liq. 271, 220–227. doi: 10.1016/j.molliq.2018.08.134

CrossRef Full Text | Google Scholar

Hansen, L. H., Jensen, L. B., Sørensen, H. I., and Sørensen, S. J. (2007). Substrate specificity of the OqxAB multidrug resistance pump in Escherichia coli and selected enteric bacteria. J. Antimicrob. Chemother. 60, 145–147. doi: 10.1093/jac/dkm167

PubMed Abstract | CrossRef Full Text | Google Scholar

Horiyama, T., Yamaguchi, A., and Nishino, K. (2010). TolC dependency of multidrug efflux systems in salmonella enterica serovar Typhimurium. J. Antimicrob. Chemother. 65, 1372–1376. doi: 10.1093/jac/dkq160

PubMed Abstract | CrossRef Full Text | Google Scholar

Hough, W. L., Smiglak, M., Rodriguez, H., Swatloski, R. P., Spear, S. K., Daly, D. T., et al. (2007). The third evolution of ionic liquids: active pharmaceutical ingredients. New J. Chem. 31, 1429–1436. doi: 10.1039/b706677p

CrossRef Full Text | Google Scholar

Kalb, R. S., Stepurko, E. N., Emel’yanenko, V. N., and Verevkin, S. P. (2016). Carbonate based ionic liquid synthesis (CBILS[registered sign]): thermodynamic analysis. Phys. Chem. Chem. Phys. 18, 31904–31913. doi: 10.1039/c6cp06594e

PubMed Abstract | CrossRef Full Text | Google Scholar

Kalb, R., Wesner, W., Hermann, R., Kotschan, M., Schelch, M., and Staber, W. (2005). WO2005021484. Verfahren zur Herstllung ionischer Flüssigkeiten, ionischer Feststoffe oder Gemische derselben.

Google Scholar

Kowalczyk, P., Borkowski, A., Czerwonka, G., Cłapa, T., Cieśla, J., Misiewicz, A., et al. (2018). The microbial toxicity of quaternary ammonium ionic liquids is dependent on the type of lipopolysaccharide. J. Mol. Liq. 266, 540–547. doi: 10.1016/j.molliq.2018.06.102

CrossRef Full Text | Google Scholar

Martínez-Suárez, J. V., Ortiz, S., and López-Alonso, V. (2016). Potential impact of the resistance to quaternary ammonium disinfectants on the persistence of listeria monocytogenes in food processing environments. Front. Microbiol. 7:638. doi: 10.3389/fmicb.2016.00638

PubMed Abstract | CrossRef Full Text | Google Scholar

Mester, P., Gundolf, T., Kalb, R., Wagner, M., and Rossmanith, P. (2015). Molecular mechanisms mediating tolerance to ionic liquids in Listeria monocytogenes. Sep. Purif. Technol. 155, 32–37. doi: 10.1016/j.seppur.2015.01.017

CrossRef Full Text | Google Scholar

Mester, P., Jehle, A. K., Leeb, C., Kalb, R., Grunert, T., and Rossmanith, P. (2016). FTIR metabolomic fingerprint reveals different modes of action exerted by active pharmaceutical ingredient based ionic liquids (API-ILs) on: salmonella typhimurium. RSC Adv. 6, 32220–32227. doi: 10.1039/c5ra24970h

CrossRef Full Text | Google Scholar

Mester, P., Robben, C., Witte, A. K., Kalb, R., Ehling-Schulz, M., Rossmanith, P., et al. (2019). FTIR spectroscopy suggests a revised mode of action for the cationic side-chain effect of ionic liquids. ACS Comb. Sci. 21, 90–97. doi: 10.1021/acscombsci.8b00141

PubMed Abstract | CrossRef Full Text | Google Scholar

Morrissey, S., Pegot, B., Coleman, D., Garcia, M. T., Ferguson, D., Quilty, B., et al. (2009). Biodegradable, non-bactericidal oxygen-functionalised imidazolium esters: a step towards ‘greener’ ionic liquids. Green Chem. 11:475. doi: 10.1039/b812809j

CrossRef Full Text | Google Scholar

Poole, K. (2002). Mechanisms of bacterial biocide and antibiotic resistance. J. Appl. Microbiol. 92, 55S–64S. doi: 10.1046/j.1365-2672.92.5s1.8.x

CrossRef Full Text | Google Scholar

Poole, K. (2004). Efflux-mediated multiresistance in gram-negative bacteria. Clin. Microbiol. Infect. 10, 12–26. doi: 10.1111/j.1469-0691.2004.00763.x

PubMed Abstract | CrossRef Full Text | Google Scholar

Poole, K. (2005). Efflux-mediated antimicrobial resistance. J. Antimicrob. Chemother. 56, 20–51. doi: 10.1093/jac/dki171

CrossRef Full Text | Google Scholar

Poole, K. (2007). Efflux pumps as antimicrobial resistance mechanisms. Ann. Med. 39, 162–176. doi: 10.1080/07853890701195262

CrossRef Full Text | Google Scholar

Prudêncio, C., Vieira, M., Van der Auweraer, S., and Ferraz, R. (2020). Recycling old antibiotics with ionic liquids. Antibiotics 9, 1–16. doi: 10.3390/antibiotics9090578

PubMed Abstract | CrossRef Full Text | Google Scholar

Putman, M., Van Veen, H. W., and Konings, W. N. (2000). Molecular properties of bacterial multidrug transporters. Microbiol. Mol. Biol. Rev. 64, 672–693. doi: 10.1128/MMBR.64.4.672-693.2000

PubMed Abstract | CrossRef Full Text | Google Scholar

Qiao, M., Ying, G.-G., Singer, A. C., and Zhu, Y.-G. (2018). Review of antibiotic resistance in China and its environment. Environ. Int. 110, 160–172. doi: 10.1016/j.envint.2017.10.016

CrossRef Full Text | Google Scholar

Rogers, R. D., and Seddon, K. R. (2003). Ionic Liquids-Solvents of the Future? Science 302, 792–793.

Google Scholar

Ruegg, T. L., Kim, E.-M., Simmons, B. A., Keasling, J. D., Singer, S. W., Soon Lee, T., et al. (2014). An auto-inducible mechanism for ionic liquid resistance in microbial biofuel production. Nat. Commun. 5:3490. doi: 10.1038/ncomms4490

PubMed Abstract | CrossRef Full Text | Google Scholar

Shafaati, M., Boroumand, M., Nowroozi, J., Amiri, P., and Kazemian, H. (2016). Correlation between qacE and qacEΔ1 efflux pump genes, antibiotic and disinfectant resistant among clinical isolates of E. coli. Recent Pat. Antiinfect. Drug Discov. 11, 189–195. doi: 10.2174/1574891X11666160815094718

PubMed Abstract | CrossRef Full Text | Google Scholar

Szmolka, A., and Nagy, B. (2013). Multidrug resistant commensal Escherichia coli in animals and its impact for public health. Front. Microbiol. 4:258. doi: 10.3389/fmicb.2013.00258

PubMed Abstract | CrossRef Full Text | Google Scholar

Tarannum, A., Jonnalagadda, R. R., and Nishter, N. F. (2019). Stability of collagen in ionic liquids: ion specific Hofmeister series effect. Spectrochim. Acta A Mol. Biomol. Spectrosc. 212, 343–348. doi: 10.1016/j.saa.2019.01.029

PubMed Abstract | CrossRef Full Text | Google Scholar

Tezel, U., and Pavlostathis, S. G. (2015). Quaternary ammonium disinfectants: microbial adaptation, degradation and ecology. Curr. Opin. Biotechnol. 33, 296–304. doi: 10.1016/j.copbio.2015.03.018

PubMed Abstract | CrossRef Full Text | Google Scholar

Venkata Nancharaiah, Y., Reddy, G. K. K., Lalithamanasa, P., and Venugopalan, V. P. (2012). The ionic liquid 1-alkyl-3-methylimidazolium demonstrates comparable antimicrobial and antibiofilm behavior to a cationic surfactant. Biofouling 28, 1141–1149. doi: 10.1080/08927014.2012.736966

PubMed Abstract | CrossRef Full Text | Google Scholar

Wasserscheid, P., and Welton, T. (eds.) (2008). in Ionic Liquids in Synthesis. Vol. 1 (Weinheim: Wiley-Vc).

Google Scholar

Weyhing-Zerrer, N., Gundolf, T., Kalb, R., Oßmer, R., Rossmanith, P., and Mester, P. (2017). Predictability of ionic liquid toxicity from a SAR study on different systematic levels of pathogenic bacteria. Ecotoxicol. Environ. Saf. 139, 394–403. doi: 10.1016/j.ecoenv.2017.01.055

PubMed Abstract | CrossRef Full Text | Google Scholar

Yamasaki, S., Nagasawa, S., Fukushima, A., Hayashi-nishino, M., and Nishino, K. (2013). Cooperation of the multidrug efflux pump and lipopolysaccharides in the intrinsic antibiotic resistance of salmonella enterica serovar Typhimurium. J. Antimicrob. Chemother. 68, 1066–1070. doi: 10.1093/jac/dks528

PubMed Abstract | CrossRef Full Text | Google Scholar

Yu, Z., Mo, L., Zhang, J., and Liu, S. (2016). Time- and anion-dependent stimulation on triphosphopyridine nucleotide followed by antioxidant responses in Vibrio fischeri after exposure to 1-ethyl-3-methylimidazolium salts. Chemosphere 163, 452–460. doi: 10.1016/j.chemosphere.2016.08.061

PubMed Abstract | CrossRef Full Text | Google Scholar

Keywords: ionic liquids, antimicrobial, multidrug resistance, efflux pump, Resistance Nodulation Division, structure–activity relationship, Escherichia coli, Salmonella enterica

Citation: Gundolf T, Kalb R, Rossmanith P and Mester P (2022) Bacterial Resistance Toward Antimicrobial Ionic Liquids Mediated by Multidrug Efflux Pumps. Front. Microbiol. 13:883931. doi: 10.3389/fmicb.2022.883931

Received: 25 February 2022; Accepted: 27 April 2022;
Published: 19 May 2022.

Edited by:

Laurent Dufossé, Université de la Réunion, France

Reviewed by:

Ahmed Ghamry Abdelhamid, The Ohio State University, United States
Kunihiko Nishino, Osaka University, Japan

Copyright © 2022 Gundolf, Kalb, Rossmanith and Mester. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

*Correspondence: Patrick Mester, cGF0cmljay1qdWxpYW4ubWVzdGVyQHZldG1lZHVuaS5hYy5hdA==

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