AUTHOR=Xu Mengjie , Fu Huiyu , Chen Dailing , Shao Zehuai , Zhu Jun , Alali Walid Q. , Chen Lanming 

TITLE=Simple Visualized Detection Method of Virulence-Associated Genes of Vibrio cholerae by Loop-Mediated Isothermal Amplification

JOURNAL=Frontiers in Microbiology

VOLUME=10

YEAR=2019

URL=https://www.frontiersin.org/journals/microbiology/articles/10.3389/fmicb.2019.02899

DOI=10.3389/fmicb.2019.02899

ISSN=1664-302X

ABSTRACT=<p><italic>Vibrio cholerae</italic> is a leading waterborne pathogenic bacterium worldwide. It can cause human cholera that is still pandemic in developing nations. Detection of <italic>V</italic>. <italic>cholerae</italic> contamination in drinking water and aquatic products is imperative for assuring food safety. In this study, a simple, sensitive, specific, and visualized method was developed based on loop-mediated isothermal amplification (LAMP) (designated sssvLAMP) to detect virulence-associated (<italic>ctxA, tcpA</italic>, <italic>hapA</italic>, <italic>mshA</italic>, <italic>pilA</italic>, and <italic>tlh</italic>) and species-specific (<italic>lolB</italic>) genes of <italic>V. cholerae.</italic> Three pairs of oligonucleotide primers (inner, outer, and loop primers) were designed and or synthesized to target each of these genes. The optimal conditions of the sssvLAMP method was determined, and one-step sssvLAMP reaction was performed at 65°C for 40 min. Positive results were simply read by the naked eye via color change (from orange to light green) under the visible light, or by the production of green fluorescence under the UV light (260 nm). The sssvLAMP method was more efficient in detecting 6.50 × 10<sup>1</sup>–6.45 × 10<sup>4</sup>-fold low number of <italic>V. cholerae</italic> cells, and more sensitive in <italic>V. cholerae</italic> genomic DNA (1.36 × 10<sup>–2</sup>-4.42 × 10<sup>–6</sup> ng/reaction) than polymerase chain reaction (PCR) method. Among 52 strains of <italic>V. cholerae</italic> and 50 strains of non-target species (e.g., other <italic>Vibrios</italic> and common pathogens) examined, the sensitivity and specificity of the sssvLAMP method were 100% for all the target genes. Similar high efficiency of the method was observed when tested with spiked samples of water and aquatic products, as well as human stool specimens. Water from various sources and commonly consumed fish samples were promptly screened by this simple and efficient visualized method and diversified variation in the occurrence of the target genes was observed. <italic>V. cholerae</italic> strains could be mostly detected by the presence of <italic>hapA</italic> and <italic>tlh</italic> alone or in combination with other genes, indicating a variable risk of potentially pathogenic non-O1/O139 strains in edible food products. This novel LAMP method can be a promising tool to address the increasing need of food safety control of aquatic products.</p>