AUTHOR=Zhang Yu-Fei , Wang Yu-Hao , Gu Zhi-Feng , Pan Xian-Run , Li Jian , Ding Hui , Zhang Yang , Deng Ke-Jun TITLE=Bitter-RF: A random forest machine model for recognizing bitter peptides JOURNAL=Frontiers in Medicine VOLUME=10 YEAR=2023 URL=https://www.frontiersin.org/journals/medicine/articles/10.3389/fmed.2023.1052923 DOI=10.3389/fmed.2023.1052923 ISSN=2296-858X ABSTRACT=Introduction

Bitter peptides are short peptides with potential medical applications. The huge potential behind its bitter taste remains to be tapped. To better explore the value of bitter peptides in practice, we need a more effective classification method for identifying bitter peptides.

Methods

In this study, we developed a Random forest (RF)-based model, called Bitter-RF, using sequence information of the bitter peptide. Bitter-RF covers more comprehensive and extensive information by integrating 10 features extracted from the bitter peptides and achieves better results than the latest generation model on independent validation set.

Results

The proposed model can improve the accurate classification of bitter peptides (AUROC = 0.98 on independent set test) and enrich the practical application of RF method in protein classification tasks which has not been used to build a prediction model for bitter peptides.

Discussion

We hope the Bitter-RF could provide more conveniences to scholars for bitter peptide research.