Artificial intelligence and omics-based autoantibody profiling in dementia

Kazuki Mitsuru Matsuda Yumi Kameyama Kazuhiro Iwadoh Masashi Miyawaki Mitsutaka Yakabe Masaki Ishii Sumito Ogawa Masahiro Akishita Shinichi Sato Ayumi Yoshizaki ^*

• The University of Tokyo, Bunkyo, Japan

Dementia is a neurodegenerative syndrome marked by the accumulation of disease-specific proteins and immune dysregulation, including autoimmune mechanisms involving autoantibodies. Current diagnostic methods are often invasive, time-consuming, or costly. This study explores the use of proteome-wide autoantibody screening (PWAbS) for noninvasive dementia diagnosis by analyzing serum samples from Alzheimer's disease (AD), dementia with Lewy bodies (DLB), and age-matched cognitively normal individuals (CNIs). Serum samples from 35 subjects were analyzed utilizing our original wet protein arrays displaying more than 13,000 human proteins, revealing elevated gross autoantibody levels in AD and DLB patients compared to CNIs. A total of 229 autoantibodies were differentially elevated in AD and/or DLB, effectively distinguishing between patient groups. Machine learning models showed high accuracy in classifying AD, DLB, and CNIs. Gene ontology analysis highlighted autoantibodies targeting neuroactive ligands/receptors in AD and lipid metabolism proteins in DLB. Notably, autoantibodies targeting neuropeptide B (NPB) and adhesion G protein-coupled receptor F5 (ADGRF5) showed significant correlations with clinical traits including Mini Mental State Examination scores, suggesting a role in dementia pathogenesis. The study demonstrates the potential of PWAbS and artificial intelligence integration as a noninvasive diagnostic tool for dementia, uncovering biomarkers that could enhance understanding of disease mechanisms. Limitations include demographic differences, small sample size, and lack of external validation. Future research should involve longitudinal observation in larger, diverse cohorts and functional studies to clarify autoantibodies' roles in dementia pathogenesis and their diagnostic and therapeutic potential.