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ORIGINAL RESEARCH article

Front. Immunol.
Sec. Inflammation
Volume 15 - 2024 | doi: 10.3389/fimmu.2024.1506663
This article is part of the Research Topic Exploring Immune Cell Roles in Cardiac Repair and Remodeling View all 12 articles

Identification and validation of the diagnostic biomarker MFAP5 for CAVD with type 2 diabetes by bioinformatics analysis

Provisionally accepted
Qiang Shen Qiang Shen 1,2*Lin Fan Lin Fan 1Chen jiang Chen jiang 1Dingyi Yao Dingyi Yao 1Xingyu Qian Xingyu Qian 1Fuqiang Tong Fuqiang Tong 1Zhengfeng Fan Zhengfeng Fan 1Zongtao Liu Zongtao Liu 1Nian Guo Dong Nian Guo Dong 1Chao Zhang Chao Zhang 1Jiawei Shi Jiawei Shi 1
  • 1 Huazhong University of Science and Technology, Wuhan, China
  • 2 Union hospital, Wuhan, China

The final, formatted version of the article will be published soon.

    Introduction: Calcific aortic valve disease (CAVD) is increasingly prevalent among the aging population, and there is a notable lack of drug therapies. Consequently, identifying novel drug targets will be of utmost importance. Given that type 2 diabetes is an important risk factor for CAVD, we identified key genes associated with diabetes -related CAVD via various bioinformatics methods, which provide further potential molecular targets for CAVD with diabetes.Methods: Three transcriptome datasets related to CAVD and two related to diabetes were retrieved from the Gene Expression Omnibus (GEO) database. To distinguish key genes, differential expression analysis with the "Limma" package and WGCNA was applied. Machine learning (ML) algorithms were employed to screen potential biomarkers. The receiver operating characteristic curve (ROC) and nomogram were then constructed. The CIBERSORT algorithm was utilized to investigate immune cell infiltration in CAVD. Lastly, the association between the hub genes and 22 types of infiltrating immune cells was evaluated.Results: By intersecting the results of the "Limma" and WGCNA analyses, 727 and 190 CAVD -related genes identified from the GSE76717 and GSE153555 datasets were obtained. Then, through differential analysis and interaction, 619 genes shared by the two diabetes mellitus datasets were acquired. Next, we intersected the differential genes and module genes of CAVD with the differential genes of diabetes, and the obtained genes were used for subsequent analysis.ML algorithms and the PPI network yielded a total of 12 genes, 10 of which showed a higher diagnostic value. Immune cell infiltration analysis revealed that immune dysregulation was closely linked to CAVD progression. Experimentally, we have verified the gene expression differences of MFAP5, which has the potential to serve as a diagnostic biomarker for CAVD.In this study, a multi-omics approach was used to identify 10 CAVD-related biomarkers (COL5A1, COL5A2, THBS2, MFAP5, BTG2, COL1A1, COL1A2, MXRA5, LUM, CD34) and to develop an exploratory risk model. Western blot (WB) and immunofluorescence experiments revealed that MFAP5 plays a crucial role in the progression of CAVD in the context of diabetes, offering new insights into the disease mechanism.

    Keywords: CAVD, diabetes, WGCNA, machine learning, Immune infiltration

    Received: 05 Oct 2024; Accepted: 29 Nov 2024.

    Copyright: © 2024 Shen, Fan, jiang, Yao, Qian, Tong, Fan, Liu, Dong, Zhang and Shi. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

    * Correspondence: Qiang Shen, Huazhong University of Science and Technology, Wuhan, China

    Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.