Skip to main content

ORIGINAL RESEARCH article

Front. Immunol.
Sec. Cancer Immunity and Immunotherapy
Volume 15 - 2024 | doi: 10.3389/fimmu.2024.1498583
This article is part of the Research Topic The Role of Metabolic Reprogramming in Tumor Therapy View all 3 articles

Characterization of NOD-like receptor-based molecular heterogeneity in glioma and its association with immune micro-environment and metabolism reprogramming

Provisionally accepted
Chunlin Lu Chunlin Lu *Huihao Ma Huihao Ma Jie Wang Jie Wang Fei Sun Fei Sun *Mingyang Fei Mingyang Fei *Ying Li Ying Li *Jing Liu Jing Liu *Bin Dong Bin Dong *
  • First Affiliated Hospital, Dalian Medical University, Dalian, China

The final, formatted version of the article will be published soon.

    Background and Purpose: The characteristics and role of NOD-like receptor (NLR) signaling pathway in high-grade gliomas were still unclear. This study aimed to reveal the association of NLR with clinical heterogeneity of glioblastoma (GBM) patients, and to explore the role of NLR pathway hub genes in the occurrence and development of GBM. Methods: Transcriptomic data from 496 GBM patients with complete prognostic information were obtained from the TCGA, GEO, and CGGA databases. Using the NMF clustering algorithm and the expression profiles of NLR genes, these 496 GBM patients were classified into different clinical subtypes. The pathway activity of NLR and the immune micro-environment characteristics were then compared between these subtypes. A novel and accurate NLR expression profile-based prognostic marker for GBM was developed using LASSO and COX regression analysis. Results: Based on the NLR gene expression profile, GBM patients were accurately divided into two clinical subtypes (C1 and C2) with different clinical outcomes. The two groups of patients showed different immune microenvironment characteristics and metabolic characteristics, which might be the potential reason for the difference in prognosis. Differential expression and enrichment analyzes revealed intrinsic gene signature differences between C1 and C2 subtypes. Based on the differential expression profiles of C1 and C2, prognostic molecular markers related to NLR were developed. The AUC value of the 3-year ROC curve ranged from 0.601 to 0.846, suggesting its potential clinical significance. Single-cell sequencing analysis showed that the NLR gene was mainly active in myeloid cells within GBM. The random forest algorithm identified the crucial role of TRIP6 gene in NLR pathway. Molecular biology experiments confirmed that TRIP6 was abnormally overexpressed in GBM. Knockdown of TRIP6 gene can significantly inhibit the proliferation and migration ability of GBM cells. Conclusion: The NLR signaling pathway plays a critical role in regulating immune microenvironment and metabolism reprogramming of GBM. TRIP6 is a potential hub gene within the NLR pathway and affects the malignant biological behavior of GBM cells.

    Keywords: NLR pathway, GBM, immune microenvironment, metabolism reprogramming, clinical heterogeneity, TRIP6

    Received: 19 Sep 2024; Accepted: 23 Dec 2024.

    Copyright: © 2024 Lu, Ma, Wang, Sun, Fei, Li, Liu and Dong. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

    * Correspondence:
    Chunlin Lu, First Affiliated Hospital, Dalian Medical University, Dalian, China
    Fei Sun, First Affiliated Hospital, Dalian Medical University, Dalian, China
    Mingyang Fei, First Affiliated Hospital, Dalian Medical University, Dalian, China
    Ying Li, First Affiliated Hospital, Dalian Medical University, Dalian, China
    Jing Liu, First Affiliated Hospital, Dalian Medical University, Dalian, China
    Bin Dong, First Affiliated Hospital, Dalian Medical University, Dalian, China

    Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.