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ORIGINAL RESEARCH article

Front. Immunol.
Sec. Cancer Immunity and Immunotherapy
Volume 15 - 2024 | doi: 10.3389/fimmu.2024.1463747
This article is part of the Research Topic Immunological Precision Therapeutics: Integrating Multi-Omics Technologies and Comprehensive Approaches for Personalized Immune Intervention View all 27 articles

Single-Cell Sequencing Uncovers the Mechanistic Role of DAPK1 in Glioma and Its Diagnostic and Prognostic Implications

Provisionally accepted
Tian-Hang Yu Tian-Hang Yu 1Yan-Yu Ding Yan-Yu Ding 2Siguo Zhao Siguo Zhao 2Jie-Hui Zhao Jie-Hui Zhao 2Yu Gu Yu Gu 2Dong-Hui Chen Dong-Hui Chen 1Fang Zhang Fang Zhang 2Wenming Hong Wenming Hong 1*
  • 1 First Affiliated Hospital of Anhui Medical University, Hefei, China
  • 2 Anhui Medical University, Hefei, Anhui Province, China

The final, formatted version of the article will be published soon.

    We conducted an investigation into the characteristics of single-cell differentiation data in gliomas, with a focus on developing DAPK1-based prognostic markers to predict patient outcomes. Dysregulated expression of DAPK1 has been associated with the invasive behavior of various malignancies, including gliomas.However, the precise role and underlying mechanisms of DAPK1 in gliomas remain inadequately understood.We performed analyses on RNA-seq and microarray datasets from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO), in addition to single-cell RNA sequencing (scRNA-seq) data from glioma patients available in GEO.Utilizing the Seurat R package, we identified gene clusters associated with survival from the scRNA-seq data. Prognostic models were developed using LASSO and stepwise regression algorithms. Furthermore, we assessed the predictive potential of these genes within the immune microenvironment and their relevance in immunotherapy contexts.Results: Our scRNA-seq data analysis revealed 32 distinct cell clusters corresponding to 10 cell types. Through dimensionality reduction and clustering, we identified three glial cell subpopulations based on their differentiation trajectories. DAPK1, serving as a marker gene for the terminal subpopulation, exhibited an association with poor prognosis.Conclusions: DAPK1-based prognostic models show promise for accurately predicting outcomes in glioblastoma and glioma. An in-depth examination of DAPK1's specific mechanisms in glioblastoma could elucidate its role in immunotherapy response.Targeting the DAPK1 gene may offer therapeutic benefits for glioma patients.

    Keywords: Glioma, DAPk1, diagnosis, prognosis, Immune infiltration, Tumor immune microenvironment

    Received: 12 Jul 2024; Accepted: 31 Dec 2024.

    Copyright: © 2024 Yu, Ding, Zhao, Zhao, Gu, Chen, Zhang and Hong. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

    * Correspondence: Wenming Hong, First Affiliated Hospital of Anhui Medical University, Hefei, China

    Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.