AUTHOR=Yan Binghao , Nam Yunbi , Li Lingyao , Deek Rebecca A. , Li Hongzhe , Ma Siyuan TITLE=Recent advances in deep learning and language models for studying the microbiome JOURNAL=Frontiers in Genetics VOLUME=15 YEAR=2025 URL=https://www.frontiersin.org/journals/genetics/articles/10.3389/fgene.2024.1494474 DOI=10.3389/fgene.2024.1494474 ISSN=1664-8021