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ORIGINAL RESEARCH article

Front. Genet.
Sec. Genomics of Plants and the Phytoecosystem
Volume 15 - 2024 | doi: 10.3389/fgene.2024.1452680

The Complete chloroplast genome of Illicium verum and comparative analysis with related species from Magnoliaceae and Illiciaceae

Provisionally accepted
Yingying CAO Yingying CAO Yongxing Lai Yongxing Lai *Zhuxin Li Zhuxin Li *Shanshan Zhai Shanshan Zhai *Yinghan Dai Yinghan Dai *Junyu Tao Junyu Tao *Qing Wang Qing Wang *Ziheng Xu Ziheng Xu *Minjie Jiang Minjie Jiang *Li Yu Li Yu *Jing Leng Jing Leng *Haibo Tang Haibo Tang *
  • Guangxi University of Chinese Medicine, Nanning, China

The final, formatted version of the article will be published soon.

    Illicium verum (Illiciaceae), an ecologically significant endemic plant, predominantly grows in Guangxi, China, which is the primary region for its cultivation. This area accounts for more than 80% of the total cultivation and yield in China. Despite its importance, comprehensive studies on the chloroplast (cp) genome of I. verum are limited. In our research, we sequenced and analyzed the complete cp genome of I. verum and conducted a comparative analysis with nine related species from the families Magnoliaceae, Schisandraceae, and Illiciaceae. The cp genome of I. verum spans 143,187 base pairs (bp), comprising a large single copy (LSC) region of 100,868 bp, a small single copy (SSC) region of 20,235 bp, and two inverted repeats (IR) regions, each 11,042 bp in length. We identified 81 simple sequence repeats (SSRs) within this genome. The chloroplast genome contains 78 protein-coding genes, 8 ribosomal RNA (rRNA) genes, and 35 transfer RNA (tRNA) genes. Structurally, the IR regions exhibit greater similarity across different genera of Magnoliaceae and Illiciaceae compared to the LSC and SSC regions. Phylogenetic analysis revealed high homology between the cp genome of I. verum and those of Illicium burmanicum, Illicium simonsii, and Illicium anisatum. These findings suggest that the cp genome of I. verum may serve as a valuable genomic resource for elucidating the phylogenetic positions and relationships within the Illiciaceae family. This information will be instrumental for future taxonomic research on Illicium species and for advancing genomic studies of these plants.

    Keywords: Chloroplast genome sequence, comparative analysis, Illicium verum, phylogenetic relationship, Illiciaceae

    Received: 21 Jun 2024; Accepted: 25 Nov 2024.

    Copyright: © 2024 CAO, Lai, Li, Zhai, Dai, Tao, Wang, Xu, Jiang, Yu, Leng and Tang. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

    * Correspondence:
    Yongxing Lai, Guangxi University of Chinese Medicine, Nanning, China
    Zhuxin Li, Guangxi University of Chinese Medicine, Nanning, China
    Shanshan Zhai, Guangxi University of Chinese Medicine, Nanning, China
    Yinghan Dai, Guangxi University of Chinese Medicine, Nanning, China
    Junyu Tao, Guangxi University of Chinese Medicine, Nanning, China
    Qing Wang, Guangxi University of Chinese Medicine, Nanning, China
    Ziheng Xu, Guangxi University of Chinese Medicine, Nanning, China
    Minjie Jiang, Guangxi University of Chinese Medicine, Nanning, China
    Li Yu, Guangxi University of Chinese Medicine, Nanning, China
    Jing Leng, Guangxi University of Chinese Medicine, Nanning, China
    Haibo Tang, Guangxi University of Chinese Medicine, Nanning, China

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