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ORIGINAL RESEARCH article

Front. Genet.
Sec. Computational Genomics
Volume 15 - 2024 | doi: 10.3389/fgene.2024.1447296

Role of telomere dysfunction and immune infiltration in idiopathic pulmonary fibrosis: new insights from bioinformatics analysis

Provisionally accepted
Chenkun Fu Chenkun Fu 1Xin Tian Xin Tian 1*Shuang Wu Shuang Wu 1*Xiaojuan Chu Xiaojuan Chu 1Yiju Cheng Yiju Cheng 1,2*Wengting Yang Wengting Yang 1*
  • 1 Department of Respiratory and Critical Care Medicine, Affiliated Hospital of Guizhou Medical University, Guiyang, Guizhou Province, China
  • 2 Department of Respiratory and Critical Care Medicine, The Fourth People’s Hospital of Guiyang, Guiyang, Guizhou Province, China

The final, formatted version of the article will be published soon.

    Background: Idiopathic pulmonary fibrosis (IPF) is a chronic progressive interstitial lung disease characterized by unexplained irreversible pulmonary fibrosis. Although the etiology of IPF is unclear, studies have shown that it is related to telomere length shortening. However, the prognostic value of telomere-related genes in IPF has not been investigated.We utilized the GSE10667 and GSE110147 datasets as the training set, employing differential expression analysis and weighted gene co-expression network analysis (WGCNA) to screen for disease candidate genes. Then, we used consensus clustering analysis to identify different telomere patterns. Next, we used summary data-based mendelian randomization (SMR) analysis to screen core genes. We further evaluated the relationship between core genes and overall survival and lung function in IPF patients. Finally, we performed immune infiltration analysis to reveal the changes in the immune microenvironment of IPF.Results: Through differential expression analysis and WGCNA, we identified 35 significant telomere regulatory factors. Consensus clustering analysis revealed two distinct telomere patterns, consisting of cluster A (n = 26) and cluster B (n = 19). Immune infiltration analysis revealed that cluster B had a more active immune microenvironment, suggesting its potential association with IPF. Using GTEx eQTL data, our SMR analysis identified two genes with potential causal associations with IPF, including GPA33 (P SMR =0.0013; P HEIDI =0.0741) and MICA (P SMR =0.0112; P HEIDI =0.9712). We further revealed that the expression of core genes is associated with survival time and lung function in IPF patients. Finally, immune infiltration analysis revealed that NK cells were down-regulated and plasma cells and memory B cells were up-regulated in IPF. Further correlation analysis showed that GPA33 expression was positively correlated with NK cells and negatively correlated with plasma cells and memory B cells. Our study provides a new perspective for the role of telomere dysfunction and immune infiltration in IPF and identifies potential therapeutic targets. Further research may reveal how core genes affect cell function and disease progression, providing new insights into the complex mechanisms of IPF.

    Keywords: Idiopathic Pulmonary Fibrosis, Telomere, Immune infiltration, WGCNA, GEO, summary data-based mendelian randomization analysis, GPA33

    Received: 18 Jun 2024; Accepted: 29 Aug 2024.

    Copyright: © 2024 Fu, Tian, Wu, Chu, Cheng and Yang. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

    * Correspondence:
    Xin Tian, Department of Respiratory and Critical Care Medicine, Affiliated Hospital of Guizhou Medical University, Guiyang, 550004, Guizhou Province, China
    Shuang Wu, Department of Respiratory and Critical Care Medicine, Affiliated Hospital of Guizhou Medical University, Guiyang, 550004, Guizhou Province, China
    Yiju Cheng, Department of Respiratory and Critical Care Medicine, The Fourth People’s Hospital of Guiyang, Guiyang, Guizhou Province, China
    Wengting Yang, Department of Respiratory and Critical Care Medicine, Affiliated Hospital of Guizhou Medical University, Guiyang, 550004, Guizhou Province, China

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