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ORIGINAL RESEARCH article

Front. Genet.
Sec. Livestock Genomics
Volume 15 - 2024 | doi: 10.3389/fgene.2024.1432105

Genetic Structure and Selective Sweeps in Kirghiz Sheep Using SNP50K Bead Chip

Provisionally accepted
Xiaopeng Li Xiaopeng Li *Lijun Zhu Lijun Zhu Cheng-long Zhang Cheng-long Zhang Xueyan Wang Xueyan Wang Yanhao Li Yanhao Li Wen Zhou Wen Zhou Zhipeng Han Zhipeng Han Ruizhi Yang Ruizhi Yang Yuwei Peng Yuwei Peng Yahui Han Yahui Han Lulu Zhang Lulu Zhang Shudong Liu Shudong Liu *
  • Tarim University, Aral, China

The final, formatted version of the article will be published soon.

    The objective of this study is to analyze environmental genetic selection signals in large-scale sheep populations with conflicting environmental adaptations, aiming to identify and isolate genes associated with environmental adaptations in sheep populations. Kirghiz sheep, which inhabit high-altitude environments year-round, demonstrate the ability to adapt to extreme conditions. In this study, 42 Kirghiz sheep, 24 Tien-Shan in Kyrgyzstan sheep, 189 Qira black sheep, and 160 Chinese Merino sheep were genotyped using Illumina Ovine SNP50K chip. Regions exhibiting a selection signal threshold of 5%, as well as PI analysis and haplotype statistical scanning gene data were annotated, and intersecting genes were identified as candidate genes. Through Fst and haplotype statistical analysis revealed the key gene PDGFD and its vicinity's impact on fat deposition in sheep tails. Additionally, Fst and PI analysis uncovered genes related to high-altitude adaptation as well as those linked to animal growth and reproduction.Further GO and KEGG enrichment pathway analyses unveiled pathways associated with high-altitude adaptation such as negative regulation of peptidyl-tyrosine phosphorylation and xenobiotic metabolism processes.This investigation into the adaptability of Kirghiz sheep provides theoretical support and practical guidance for the conservation and genetic enhancement of Kirghiz sheep germplasm resources.

    Keywords: Kirghiz sheep, genetic patterns, selection signature, GO enrichment analysis, selective sweeps

    Received: 13 May 2024; Accepted: 01 Aug 2024.

    Copyright: © 2024 Li, Zhu, Zhang, Wang, Li, Zhou, Han, Yang, Peng, Han, Zhang and Liu. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

    * Correspondence:
    Xiaopeng Li, Tarim University, Aral, China
    Shudong Liu, Tarim University, Aral, China

    Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.