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ORIGINAL RESEARCH article

Front. Genet.
Sec. Genetics of Common and Rare Diseases
Volume 15 - 2024 | doi: 10.3389/fgene.2024.1429482

Predicting Novel Biomarkers for Early Diagnosis and Dynamic Severity Monitoring of Human Ulcerative Colitis

Provisionally accepted
Yu Chen Yu Chen Li Chen Li Chen *Sheng Huang Sheng Huang *Li Yang Li Yang *Li Wang Li Wang *Feiyun Yang Feiyun Yang *Jinxiu Huang Jinxiu Huang *Xiuliang Ding Xiuliang Ding *
  • Chongqing Academy of Animal Science, Chongqing, China

The final, formatted version of the article will be published soon.

    Background: Ulcerative colitis is an emerging global health concern that poses a significant threat to human health and can progress to colorectal cancer if not diagnosed and treated promptly. Currently, the biomarkers used clinically for diagnosis and dynamic severity monitoring lack disease specificity.Methods: Mouse models induced with 2%, 2.5%, and 3% DSS were utilized to simulate human UC with varying severities of inflammation. Transcriptome sequencing technology was employed to identify differential expressed genes (DEGs) between the control group and each treatment group.Functional enrichment analysis of the KEGG database was performed for shared DEGs among the three treatment groups. DEGs that were significantly and strongly correlated with DSS concentrations were identified using Spearman correlation analysis. Human homologous genes of the interested DEGs were searched in the HomoloGene database, and their regulation patterns in UC patients were validated using the GSE224758 dataset. These genes were then submitted to the DisGeNET database to identify their known associations with human diseases. Online tools, including SignalP 6.0 and DeepTMHMM 1.0, were used to predict signal peptides and transmembrane helices in the amino acid sequences of human genes homologous to the DEGs of interest. We have identified two potentially novel biomarkers, LGI2 and PRSS22, which are easy of detection and more specific for human UC. These findings provide new insights into the accurate diagnosis and dynamic monitoring of this persistent disease.

    Keywords: DSS-induced mouse model, ulcerative colitis, biomarkers, Transcriptome sequencing, early diagnosis, dynamic severity monitoring

    Received: 08 May 2024; Accepted: 18 Jul 2024.

    Copyright: © 2024 Chen, Chen, Huang, Yang, Wang, Yang, Huang and Ding. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

    * Correspondence:
    Li Chen, Chongqing Academy of Animal Science, Chongqing, China
    Sheng Huang, Chongqing Academy of Animal Science, Chongqing, China
    Li Yang, Chongqing Academy of Animal Science, Chongqing, China
    Li Wang, Chongqing Academy of Animal Science, Chongqing, China
    Feiyun Yang, Chongqing Academy of Animal Science, Chongqing, China
    Jinxiu Huang, Chongqing Academy of Animal Science, Chongqing, China
    Xiuliang Ding, Chongqing Academy of Animal Science, Chongqing, China

    Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.