AUTHOR=Cao Fei , Guo Chunlei , Wang Xiangyu , Wang Xuan , Yu Liyang , Zhang Haie , Zhang Jingzheng 

TITLE=Genome-wide identification, evolution, and expression analysis of the NAC gene family in chestnut (Castanea mollissima)

JOURNAL=Frontiers in Genetics

VOLUME=15

YEAR=2024

URL=https://www.frontiersin.org/journals/genetics/articles/10.3389/fgene.2024.1337578

DOI=10.3389/fgene.2024.1337578

ISSN=1664-8021

ABSTRACT=<p>The NAC gene family is one of the most important transcription factor families specific to plants, responsible for regulating many biological processes, including development, stress response, and signal transduction. However, it has not yet been characterized in chestnut, an important nut tree species. Here, we identified 115 <italic>CmNAC</italic> genes in the chestnut genome, which were divided into 16 subgroups based on the phylogenetic analysis. Numerous <italic>cis</italic>-acting elements related to auxin, gibberellin, and abscisic acid were identified in the promoter region of <italic>CmNACs</italic>, suggesting that they play an important role in the growth and development of chestnut. The results of the collinear analysis indicated that dispersed duplication and whole-genome-duplication were the main drivers of <italic>CmNAC</italic> gene expansion. RNA-seq data of developmental stages of chestnut nut, bud, and ovule revealed the expression patterns of <italic>CmNAC</italic> genes. Additionally, qRT-PCR experiments were used to verify the expression levels of some <italic>CmNAC</italic> genes. The comprehensive analysis of the above results revealed that some <italic>CmNAC</italic> members may be related to chestnut bud and nut development, as well as ovule fertility. The systematic analysis of this study will help to increase understanding of the potential functions of the <italic>CmNAC</italic> genes in chestnut growth and development.</p>