Said El Shamieh
Paolo Enrico Maltese- 1Department of Medical Laboratory Technology, Faculty of Health Sciences, Beirut Arab University, Beirut, Lebanon
- 2Magi’s Lab SRL, Rovereto, Italy
Editorial on the Research Topic
The genetics of inherited retinal diseases in understudied ethnic groups: Novel associations, challenges, and perspectives
Inherited retinal dystrophies (IRDs) cover a broad array of rare retinal diseases with diversify in genetic bases and phenotypes, affecting roughly as many as one in 2,000 individuals (Chen et al., 2021). Night or color blindness, tunnel vision, and later development to total blindness are all common vision impairment manifestations of IRDs that usually worsen with age (Chen et al., 2021). Cases of IRDs may be syndromic if they are coupled with extra-ocular symptoms or non-syndromic if they are restricted to the eye (Hartong, 2006; Berson, 2006; Dryja, 2006). Interestingly, IRDs include over 20 different phenotypes (Hartong et al., 2006). The age of onset, the rate of progression, and the underlying causal genes may assist in categorizing these distinct phenotypes (Hartong et al., 2006; Perea-Romero et al., 2021). Retinitis pigmentosa (RP) (OMIM 500004), also known as rod-cone dystrophy, is the most common non-syndromic IRD, affecting around 1.5 million individuals globally (Chen et al., 2021). Other non-syndromic forms include cone-rod dystrophies (OMIM 120970), Stargardt disease (OMIM 248200), X-linked retinoschisis (OMIM 312700) and many others. On the other hand, the most common syndromic form is Usher syndrome (USH) (OMIM 276900), a combination of hearing loss and RP (Castiglione and Moller, 2022).
Although several genetic studies have identified novel IRDs-associated genes and genetic variations, most of these associations and gene prevalence data were based on cohorts in Western Europe and North America (Smirnov et al., 2021; Colombo et al., 2021). Although the genetic basis of IRDs varies among patient cohorts, even replication for the major findings is still lacking in understudied ethnicities (Jaffal et al., 2021). Growing evidence is continuously showing the importance of better investigating these ethnicities (Amish, Mennonites, Turks, Middle Eastern populations, and the Ashkenazi Jews) because their structure and history of consanguinity are the most valuable and amenable for genomics studies. Therefore, we aimed in this Research Topic to put some of these ethnicities under the loop by including five contributions to the IRD field from different cohorts around the globe.
Maltese et al. reported the clinical and genetic features of an ethnically heterogeneous group of 123 IRD patients from different underrepresented countries referred to specialized Italian centers. These affected individuals were from all over the world; 27% were North/Northwest Africans, 17% were Asians, 15% were South/Central Americans, and 41% were Eastern Europeans. Whereas RP showed the highest prevalence at the phenotype level (56%), ABCA4 (OMIM 601691) mutations were the most frequent at the genotype level. Among the 113 different variants identified, 33 were unpublished and were associated with IRDs for the first time in this study. This work described the clinical and genetic characteristics of IRD patients from understudied ethnic groups in Italy and expanded the epidemiological research on understudied ethnic groups.
Jaffal et al., 2022a searched for the causative mutations in nine Lebanese families with USH using whole-exome sequencing. This study identified four novel disease-causing mutations in USH2A (OMIM 608400), ADGRV1 (OMIM 602851), PCDH15 (OMIM 601067) and CDH23 (OMIM 601067) genes, respectively. Moreover, a meta-analysis conducted by these authors showed that the frequency of USH type 3 had a relatively high incidence (23%) in Lebanon compared to the worldwide prevalence and that, till today, the major USH genes in the Lebanese populations are ADGRV1, USH2A, and CLRN1 (OMIM 606397) since they are responsible for around 75% of the cases Jaffal et al., 2022a The study broadened the spectrum of USH-causing mutations also showing a high heterogeneity of this disease in Lebanon.
Guo et al. performed a detailed phenotypic analysis of the Retinoschisis 1 (RS1) (OMIM 300839) mutations associated with X-linked juvenile retinoschisis (XLRS) in ten Chinese families. In addition to identifying a novel mutation in RS1; c.657C>A; p. (Cys219*), the authors noticed a high degree of phenotypic heterogeneity; asymmetrical fundus manifestations were noticed in some cases. Importantly, their approach allowed diagnosing three patients not showing signs of macular retinoschisis Guo et al. Therefore, authors concluded that genetic testing is highly recommended in patients with asymmetric fundus appearance, macular atrophy, cystic degeneration and amblyopia, for making a precise diagnosis.
Kannabiran et al. described the studies published concerning RP’s genetics in India and neighboring South Asian countries like Pakistan. There is indeed a significant opportunity for gene discovery in India and South Asia, where there is not much known about IRDs compared to the number of affected individuals Kannabiran et al. RP32 (OMIM 609913) locus was also mapped in a consanguineous Pakistani family with autosomal recessive RP, and the subsequent sequencing and refining led to the identification of the c.75C>A; p. (Asp25Glu) in Chloride channel CLIC like 1 (CLCC1) (OMIM 617539) (Li et al., 2017). The c.75C>A is the only reported mutation in CLCC1 to date and accounts for around 6% of genetic cases of arRP in Pakistani families (Li et al., 2017). Ma et al. hypothesized that this mutation arose from a common founder and thus studied all the identified patients with this mutation (Li et al., 2017). By studying the surrounding haplotypes, the authors estimated that this mutation arose 2,000–5,000 years ago and has been transmitted to affected families dispersed worldwide (Li et al., 2017). RP25 (OMIM 602772), RP32, and other loci reported so far reveal the potential for novel gene discovery in the understudied ethnicities and for improving our understanding of the IRDs genetics. Although exome sequencing is the gold standard methodology to identify novel disease-associated genes, the authors highlighted that investigating populations with a high degree of consanguinity and inbreeding might help the scope regardless of the employed method.
In conclusion, the findings of this Research Topic highlight the usefulness of focusing on understudied ethnic groups. Such a focus represents an opportunity to strengthen our knowledge of IRDs genetics, improve the diagnostic yield of genetic testing, and might lead to new treatments. To go further, scientists working on understudied ethnicities need to implement NGS, undergo international collaborations, and improve the accessibility of their patients to the healthcare service (Jaffal et al., 2022b).
Author contributions
SES and PEM have made substantial, direct, and intellectual contribution to the work and approved it for publication.
Conflict of interest
Author PEM was employed by the company Magi’s Lab SRL, Rovereto, Italy.
The remaining author declares that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
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References
Castiglione, A., and Moller, C. (2022). Usher syndrome. Audiol. Res. 12 (1), 42–65. doi:10.3390/audiolres12010005
Chen, T. C., Huang, D. S., Lin, C. W., Yang, C. H., Yang, C. M., Wang, V. Y., et al. (2021). Genetic characteristics and epidemiology of inherited retinal degeneration in Taiwan. NPJ Genom. Med. 6 (1), 16. doi:10.1038/s41525-021-00180-1
Colombo, L., Maltese, P. E., Castori, M., El Shamieh, S., Zeitz, C., Audo, I., et al. (2021). Molecular epidemiology in 591 Italian probands with nonsyndromic retinitis pigmentosa and usher syndrome. Invest. Ophthalmol. Vis. Sci. 62 (2), 13. doi:10.1167/iovs.62.2.13
Hartong, D. T., Berson, E. L., and Dryja, T. P. (2006). Retinitis pigmentosa. Lancet 368 (9549), 1795–1809. doi:10.1016/S0140-6736(06)69740-7
Jaffal, L., Joumaa, H., Mrad, Z., Zeitz, C., Audo, I., and El Shamieh, S. (2021). The genetics of rod-cone dystrophy in arab countries: A systematic review. Eur. J. Hum. Genet. 29 (6), 897–910. doi:10.1038/s41431-020-00754-0
Jaffal, L., Akhdar, H., Joumaa, H., Ibrahim, M., Chhouri, Z., Assi, A., et al. (2022a). Novel Missense and Splice Site Mutations in USH2A, CDH23, PCDH15, and ADGRV1 Are Associated With Usher Syndrome in Lebanon. Front Genet, 13, 864228. doi:10.3389/fgene.2022.864228
Jaffal, L., Mrad, Z., Ibrahim, M., et al. (2022b). The research output of rod-cone dystrophy genetics. Orphanet J Rare Dis. 17, 175. https://doi.org/10.1186/s13023-022-02318-5
Li, L., Chen, Y., Jiao, X., Jin, C., Jiang, D., Tanwar, M., et al. (2017). Homozygosity mapping and genetic analysis of autosomal recessive retinal dystrophies in 144 consanguineous Pakistani families. Invest. Ophthalmol. Vis. Sci. 58 (4), 2218–2238. doi:10.1167/iovs.17-21424
Perea-Romero, I., Gordo, G., Iancu, I. F., Del Pozo-Valero, M., Almoguera, B., Blanco-Kelly, F., et al. (2021). Genetic landscape of 6089 inherited retinal dystrophies affected cases in Spain and their therapeutic and extended epidemiological implications. Sci. Rep. 11 (1), 1526. doi:10.1038/s41598-021-81093-y
Smirnov, V. M., Nassisi, M., Solis Hernandez, C., Mejecase, C., El Shamieh, S., Condroyer, C., et al. (2021). Retinal phenotype of patients with isolated retinal degeneration due to CLN3 pathogenic variants in a French retinitis pigmentosa cohort. JAMA Ophthalmol. 139 (3), 278–291. doi:10.1001/jamaophthalmol.2020.6089
Keywords: inherited retinal degenerations, understudied ethnic groups, mutations, gene-disease association, next generation sequencing
Citation: El Shamieh S and Maltese PE (2022) Editorial: The genetics of inherited retinal diseases in understudied ethnic groups: Novel associations, challenges, and perspectives. Front. Genet. 13:990782. doi: 10.3389/fgene.2022.990782
Received: 10 July 2022; Accepted: 14 July 2022;
Published: 23 August 2022.
Edited and reviewed by:
Jared C. Roach, Institute for Systems Biology (ISB), United StatesCopyright © 2022 El Shamieh and Maltese. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Said El Shamieh, cy5lbHNoYW1pZWhAYmF1LmVkdS5sYg==; Paolo Enrico Maltese, cGFvbG8ubWFsdGVzZUBhc3NvbWFnaS5vcmc=
†These authors have contributed equally to this work