AUTHOR=Zdesenko Grace , Mduluza Takafira , Mutapi Francisca 

TITLE=Pharmacogenetics of Praziquantel Metabolism: Evaluating the Cytochrome P450 Genes of Zimbabwean Patients During a Schistosomiasis Treatment

JOURNAL=Frontiers in Genetics

VOLUME=13

YEAR=2022

URL=https://www.frontiersin.org/journals/genetics/articles/10.3389/fgene.2022.914372

DOI=10.3389/fgene.2022.914372

ISSN=1664-8021

ABSTRACT=<p>Schistosomiasis is a parasitic disease infecting over 236 million people annually, with the majority affected residing on the African continent. Control of this disease is reliant on the drug praziquantel (PZQ), with treatment success dependent on an individual reaching PZQ concentrations lethal to schistosomes. Despite the complete reliance on PZQ to treat schistosomiasis in Africa, the characterization of the pharmacogenetics associated with PZQ metabolism in African populations has been sparse. We aimed to characterize genetic variation in the drug-metabolising cytochrome P450 enzymes (CYPs) and determine the association between each variant and the efficacy of PZQ treatment in Zimbabwean patients exposed to <italic>Schistosoma haematobium</italic> infection. Genomic DNA from blood samples of 114 case-control Zimbabweans infected with schistosomes were sequenced using the <italic>CYP1A2</italic>, <italic>CYP2C9</italic>, <italic>CYP2C19</italic>, <italic>CYP2D6</italic>, <italic>CYP3A4</italic>, and <italic>CYP3A5</italic> genes as targets. Bioinformatic tools were used to identify and predict functional effects of detected single nucleotide polymorphisms (SNPs). A random forest (RF) model was then used to assess SNPs most predictive of PZQ efficacy, with a misclassification rate of 29%. SNPs were detected across all six genes, with 70 SNPs identified and multiple functional changes to the CYP enzymes predicted. Only four SNPs were significantly associated with PZQ efficacy using χ<sup>2</sup> tests, with rs951840747 (OR: 3.61, <italic>p</italic> = 0.01) in the <italic>CYP1A2</italic> gene having the highest odds of an individual possessing this SNP clearing infection, and rs6976017 (OR: 2.19, <italic>p</italic> = 0.045) of <italic>CYP3A5</italic> determined to be the most predictive of PZQ efficacy <italic>via</italic> the RF. Only the rs28371702 (CC) genotype (OR: 2.36, <italic>p</italic> = 0.024) of <italic>CYP2D6</italic> was significantly associated with an unsuccessful PZQ treatment. This study adds to the genomic characterization of the diverse populations in Africa and identifies variants relevant to other pharmacogenetic studies crucial for the development and usage of drugs in these populations.</p>