- 1Department of Ultrasound, Guangdong Women and Children Hospital, Guangzhou, China
- 2Department of Physical Examination, Guangdong Women and Children Hospital, Guangzhou, China
- 3Department of Medical Genetic, Guangdong Women and Children Hospital, Guangzhou, China
Prenatal imaging phenotypes and genotypes were analyzed in 13 cases prenatally diagnosed with Joubert syndrome (JS), all of which underwent magnetic resonance imaging (MRI), ultrasound, and genetic testing. Prenatal MRI diagnosed 10 cases as JS with a typical molar tooth sign (MTS), while prenatal ultrasound diagnosed or suspiciously diagnosed 11 cases as JS with typical or mild MTS in 10 cases. Mutations in JS-related genes and other prenatal JS imaging phenotypes were identified in 10 cases, including OFD1 in two cases [cerebellar vermis (CV) absence, posterior fossa dilation, ventriculomegaly, polydactyly, malformations of cortical development (MCD), and persistent left superior vena cava], TMEM67 in two cases (CV absence, polydactyly, hyperechoic kidneys or polycystic kidneys, posterior fossa dilation, and ventriculomegaly), CC2D2A in two cases (CV absence, polydactyly, MCD, agenesis of the corpus callosum, encephalocele and hydrocephalus, ventriculomegaly, and posterior fossa dilation), RPGRIP1L in one case (CV absence), TCTN3 in one case (CV absence, polydactyly, MCD, and posterior fossa dilation), CEP290 in one case (CV absence and polycystic kidney), and NPHP1 in one case (CV absence). The prenatal diagnosis of JS presents a number of challenges, including the variants of unknown significance, the lack of functional assessment in prenatal imaging, unclear phenotype–genotype relationships in prenatal evaluation, and the incorrect identification of the JS hallmark, the MTS, in prenatal imaging, especially on ultrasound. Although combined MRI, ultrasound, and exome sequencing could help improve the prenatal diagnosis of JS, there still exist significant challenges.
Introduction
JS is considered an archetypal ciliopathy (Cantagrel et al., 2008). To date, JS is known to be caused by pathogenic variants in 34 genes, 33 autosomal recessive genes and one X-linked gene (Adam et al., 1993). Advancements in molecular diagnostics and imaging technology have facilitated the progress of prenatal diagnosis and genetic evaluation of JS. However, the expanded phenotypes have introduced broader overlaps with other ciliopathies, while the value of prenatal imaging in the diagnosis of JS remains unclear, presenting challenges in the prenatal diagnosis of JS, which we discuss in this study.
Materials and methods
In the present study, all cases were collected from Guangdong Women and Children Hospital, which is a single-center study. An ultrasound was performed due to a routine pregnancy examination in our center or abnormal ultrasound findings at other centers and referred to our center. In our center, prenatal ultrasound was performed first. When abnormalities (such as cranial abnormalities) were found, genetic consultation was conducted to determine whether prenatal MRI and exome sequencing should be performed. Ultrasonic and MRI diagnostic criteria for JS: MTS are shown in the axial view at the midbrain and pons levels. MTS comprises an abnormally deep interpeduncular fossa; prominent, straight, and thickened superior cerebellar peduncles; and hypoplasia of the vermis, the midline portion of the cerebellum (Maria et al., 1997) (Maria et al., 1999). Inclusion criteria are as follows: 1. all cases performed prenatal MRI, ultrasound, chromosomal microarray, and exome sequencing; 2. the case was diagnosed as JS by prenatal ultrasound or MRI; and 3. an informed consent was signed in all the cases. A total of 13 cases were included in the present study.
Results
Ultrasound of targeted imaging for fetal anomalies was executed in 133,490 cases between January 2014 and January 2022 in our center. A total of 28 cases of JS were diagnosed by ultrasound and 27 cases by MRI. Exome sequencing identified disease-related gene variants in 10 cases but not in 3 cases. The present study included 13 cases prenatally diagnosed with JS. Thirteen cases underwent prenatal MRI, ultrasound (Table 1), chromosomal microarray, and exome sequencing in that order and were classified according to the American College of Medical Genetics and Genomics (ACMG) (Table 2). In total, 13 cases of JS were identified in 12 families (case 1 and case 2 came from the same family), three of whom had a pregnancy history with JS. All couples were healthy without consanguinity. Twelve families chose to odinopoeia, where this manipulation was legal in our country (autopsies were performed in three cases), and in one case, the infant was born (case 13).
No anomalies were found in the 13 cases by chromosomal microarray. Exome sequencing identified disease-related gene variants in 10 cases. Of the variants in these 10 cases, one was classified as pathogenic, six as likely pathogenic, and three as variants of unknown significance according to ACMG guidelines. Seven cases involved autosomal recessive variants, and two involved hemizygous OFD1 loss-of-function mutations.
The prenatal diagnosis by ultrasound and MRI was consistent in eight cases (diagnosis of JS, 8/13) and inconsistent in five cases (5/13). Prenatal MRI of the 13 cases diagnosed 10 as JS with typical MTS (one case was diagnosed as Dandy–Walker syndrome without MTS at 23 weeks, while JS with typical MTS was diagnosed at 28 weeks) and 2 as CV dysplasia (retrospective analysis showed mild MTS in one case and no MTS in the other); no abnormalities were found in one case (case 13). Prenatal ultrasound of the 13 cases diagnosed or suspiciously diagnosed 11 as JS with 10 typical or mild MTS, 1 as Dandy-Walker syndrome (typical MTS shown in retrospective analysis), and 1 as Blake’s pouch cyst without MTS.
In total, two cases (case 1 and 2) of OFD1 mutations were diagnosed as JS by prenatal MRI and ultrasound with typical MTS, CV absence, posterior fossa dilation, ventriculomegaly, polydactyly, MCD, and persistent left superior vena cava. One case (case 3) of TMEM67 mutations was diagnosed as JS by prenatal MRI and ultrasound with typical MTS, CV absence, hyperechoic kidneys, and polydactyly. One case (case 8) of TMEM67 mutations was diagnosed as JS by prenatal MRI with typical MTS, CV absence, posterior fossa dilation, ventriculomegaly, and polycystic kidneys, and as Dandy–Walker syndrome by prenatal ultrasound with typical MTS (retrospective analysis), most of CV absence, and polycystic kidneys. One case (case 4) of RPGRIP1L mutations was diagnosed as CV dysplasia by prenatal MRI (mild MTS found in retrospective analysis) and suspiciously diagnosed as JS with mild MTS and CV absence by ultrasound. One case (case 5) of CC2D2A mutations was diagnosed as JS by prenatal MRI and ultrasound with typical MTS, CV absence, MCD, encephalocele, and hydrocephalus. One case (case 9) of CC2D2A mutations was suspiciously diagnosed as JS by prenatal ultrasound with mild MTS, CV absence, posterior fossa dilation, ventriculomegaly, MCD, and polydactyly and diagnosed as Dandy–Walker without MTS by prenatal MRI at 23 weeks but as JS with typical MTS, CV absence, MCD, and agenesis of the corpus callosum at 28 weeks. One case (case 6) of TCTN3 mutations was diagnosed as JS by prenatal MRI and ultrasound with typical MTS, CV absence, polydactyly, MCD, and posterior fossa dilation. One case (case 7) of CEP290 mutations was diagnosed as JS by prenatal MRI and ultrasound with typical MTS, CV absence, and polycystic kidneys. One case (case 10) of NPHP1 mutations was diagnosed as CV dysplasia by prenatal MRI and suspiciously diagnosed as JS with most of CV absence by prenatal ultrasound.
Discussion
JS is a complex malformation of the midbrain and hindbrain that results in the MTS. MTS is considered the hallmark and distinctive imaging feature of JS (Maria et al., 1997) (Maria et al., 1999). The diagnosis of JS is based on three primary criteria: MTS, hypotonia in infancy with later development of ataxia, and developmental delay or intellectual disability (Adam et al., 1993–2022). Although the diagnostic criteria for JS continued to evolve, most authors concur that the neuroradiological finding of the MTS is obligatory (Adam et al., 1993). In the past, the prevalence between 1/80,000 and 1/100,000 live births was reported by many authors (Juric-Sekhar et al., 2012). However, it is likely underestimated because of legally induced labors in some countries and the limited awareness of the MTS (Juric-Sekhar et al., 2012). The present study revealed a high uniformity between prenatal imaging phenotypes and genetic sequencing in nine cases, whose prevalence was approximately 1/1,4832. The prevalence of the present study was much higher than reported in previous studies because our center was a provincial referral center for abnormal fetuses. In addition, the live births and induced labor were included in the present study.
The OFD1 gene that may play a role in cortical and heart development (Zhang et al., 2020) is involved in JS. OFD1 mutations are inherited in an X-linked recessive fashion; males are affected, while female carriers are asymptomatic (Pezzella et al., 2022). Encephalocele, hydrocephalus, macrocephaly, MCD, polydactyly, renal cystic disease, retinal disease, and tetralogy of Fallot are observed in OFD1-related JS (Coene et al., 2009) (Field et al., 2012) (Zhang et al., 2020). We identified a hemizygous OFD1 variant c.2848A>T (p.K950*), classified as likely pathogenic, in two male fetuses (cases 1 and 2), where the mother was the carrier of the mutation. These two cases were diagnosed as JS by prenatal MRI and ultrasound, based on typical MTS, CV absence, posterior fossa dilation, ventriculomegaly, polydactyly (Figures 1A,B), MCD, and persistent left superior vena cava. These prenatal imaging features were consistent with JS phenotypes. This variant might be the potential genetic etiology of the JS.
FIGURE 1. Polydactyly (black arrow) was detected by ultrasound (A) and autopsy (B) in case 1. Polydactyly was detected by ultrasound (C) and autopsy (D) in case 3. Polycystic kidneys (white arrow) were detected by ultrasound (E) and autopsy (F) in case 8. (G) The mild MTS (red arrow) and CV absence (white arrow) were detected by ultrasound in case 9. (H) CV absence (white arrow) was detected by an autopsy in case 9.
TMEM67 mutations are most prevalent in the Japanese (25.9%), North American (22.2%), and North European (23.8%) populations (Suzuki et al., 2016) (Brooks et al., 2018). Hepatic disease, renal disease, ocular coloboma, and polydactyly are phenotypes observed in JS associated with TMEM67 mutations (Iannicelli et al., 2010) (Doherty et al., 2010). To date, liver involvement, including liver fibrosis (main feature), hepatomegaly, and the elevation of liver enzymes, is found in about 70%–80% of TMEM67-related JS, representing the strongest gene–phenotype association among all JS types (Iannicelli et al., 2010) (Tsurusaki et al., 2015) (Romani et al., 2013). However, these hepatic features are harder to observe prenatally than craniocerebral, renal, and polydactyly abnormalities. Here, we identified two cases with TMEM67 variants. Case 3 carried heterozygous variants of unknown significance, with a paternally inherited c.224G>A (p.Gly75GLu) variant and a maternally inherited c.2345A>G (p.His782Arg) variant. This case was diagnosed as JS by prenatal MRI and ultrasound based on typical MTS, CV absence, hyperechoic kidney, and polydactyly (Figures 1C,D), consistent with JS phenotypes. Combined with the genetic results, a diagnosis of JS was inclined. Case 8 carried heterozygous likely pathogenic variants, with a paternally inherited c.1175C>G variant and a maternally inherited c.1250A>G variant. This case was diagnosed as JS by prenatal MRI based on typical MTS, CV absence, posterior fossa dilation, ventriculomegaly, and polycystic kidneys and as Dandy–Walker syndrome by prenatal ultrasound with typical MTS (retrospective analysis), most of CV absence, and polycystic kidneys (Figures 1E,F). These prenatal imaging features were consistent with JS phenotypes. The variants of case 3 and case 8 might be the potential genetic etiologies of the JS.
The absence of the C2 domain may lead to the abnormal development of the nervous system in individuals with CC2D2A mutations, such as encephalocele, ventriculomegaly, seizures, and mental retardation (Bachmann-Gagescu et al., 2012) (Basel-Vanagaite et al., 2006). Retinal, renal, oculorenal, hepatic, and central nervous system (CNS) abnormalities are observed in JS associated with CC2D2A mutations (Adam et al., 1993) (Gorden et al., 2008). We identified two cases with CC2D2A variants, which were classified as likely pathogenic. Case 5 was heterozygous with a paternally inherited c.3688C>T (p.R1230*) variant and a maternally inherited c.418insGAGGGAGGAGCCAAGA_? variant. This case was diagnosed as JS by prenatal MRI and ultrasound based on typical MTS, CV absence, MCD, encephalocele, and hydrocephalus. These prenatal imaging features were consistent with JS phenotypes. This variant might be the potential genetic etiology of the JS. Case 9 was heterozygous with a paternally inherited loss of heterozygosity in exons 20 and 21 of the CC2D2A gene and a maternally inherited c.2003 + 2T>C variant. This case was suspiciously diagnosed as JS by prenatal ultrasound based on mild MTS (Figure 1G), CV absence (Figures 1G,H), posterior fossa dilation, ventriculomegaly, MCD, and polydactyly. The case was diagnosed as Dandy–Walker syndrome without MTS by prenatal MRI at 23 weeks and as JS with typical MTS, CV absence, MCD, and agenesis of the corpus callosum at 28 weeks. Combined with the prenatal imaging features, this variant cannot be excluded as a potential genetic etiology of JS.
NPHP1 mutations can cause juvenile NPHP type 1, Cogan syndrome, and JS, with retinal, renal, and oculorenal involvement (Adam et al., 1993). NPHP1 mutations give rise to a milder form of JS as they produce mild MTS (elongated but thin superior cerebellar peduncles and milder vermis hypoplasia) without severe clinical symptoms (Parisi et al., 2004). In the Parisi study, mild MTS was visible in the subjects of NPHP1 deletion. Moreover, they found that MTS was visible on the MRI of the older child, but this scan was interpreted initially as normal (Parisi et al., 2004). Also, they established, retrospectively, the presence of MTS nonspecific delays prior to the onset of NPHP (Parisi et al., 2004). Hence, the case of NPHP1 mutation was difficult to diagnose with certainty without MTS, especially at the prenatal stage, probably because NPHP1 is only indirectly involved in primary cilium formation and function. Case 10 was homozygous for the loss of [2q13 (chr2:110873257–110962571)] at NPHP1, classified as pathogenic. This case was diagnosed as CV dysplasia by prenatal MRI and suspiciously diagnosed as JS with most of CV absence by prenatal ultrasound without other imaging phenotypes. However, despite the absence of MTS and other phenotypes associated with ciliopathies, based on the phenotypic characteristics of the NPHP1 variation, case 10 could not completely rule out JS.
Mutations in RPGRIP1L may cause a wide range of symptoms that involve many organs, including retinal, renal, hepatic, and oculorenal symptoms, polydactyly, and encephalocele (Adam et al., 1993). Case 4 was heterozygous for RPGRIP1L variants, classified as variants of unknown significance, with a paternally inherited c.1641dupA (p.Val548SerfsTer9) variant and a maternally inherited c.3764T>C (p.Ile1255Thr) variant. This case was diagnosed as CV dysplasia by prenatal MRI (mild MTS found in retrospective analysis) and suspiciously diagnosed as JS with mild MTS and CV absence by ultrasound without other imaging phenotypes. The genetic results and atypical prenatal imaging features weakly supported a diagnosis of JS.
TCTN3 mutations, which are less common molecular causes of JS, give rise to scoliosis, polydactyly, oral findings, horseshoe kidneys, and VSD (Thomas et al., 2012). Case 6 was homozygous for the [c.1441dupT (p.C481Lfs*133)] variant at TCTN3, which was classified as likely pathogenic. This case was diagnosed as JS by prenatal MRI and ultrasound, based on typical MTS, CV absence, polydactyly, MCD, and posterior fossa dilation. This case had the same mutation as the latter fetus and pregnancy history of CV dysplasia. The prenatal imaging features were consistent with JS phenotypes. The variant might be the potential genetic etiology of the JS.
CEP290 is termed “a gene with many faces” for its broad phenotypic spectrum, which involves retinal dystrophy, renal disease, hepatic disease, cardiac disease, encephalocele, and situs inversus (Adam et al., 1993; Valente et al., 2008; Coppieters et al., 2010). Case 7 was heterozygous for CEP290 variants, classified as variants of unknown significance, with a paternally inherited c.4303–2A>T variant and a maternally inherited c.2569A>T (K857X) variant. This case was diagnosed as JS by prenatal MRI and ultrasound, based on typical MTS, CV absence, and polycystic kidneys. The prenatal imaging features were consistent with JS phenotypes. The variant might be the potential genetic etiology of the JS.
Remarkably, no mutations were found in three cases in JS-related genes by exome sequencing. In case 13, ventriculomegaly and ependymal cyst were found on prenatal MRI, while prenatal ultrasound suspiciously diagnosed the case as JS with mild MTS, most of CV absence, and ventriculomegaly. At 1 year after birth, no abnormalities were found on MRI, and there were no clinical symptoms at present. Therefore, JS diagnosis was not supported for case 13. The other two cases (cases 11 and 12) were diagnosed as JS by prenatal MRI based on typical MTS and CV absence; case 11 presented polydactyly and MCD, while case 12 did not exhibit other imaging phenotypes. Therefore, the diagnosis was uncertain for these two cases, and further studies are needed in both families.
There are several challenges concerning the prenatal diagnosis of JS. They are as follows:
(1) In a prospective cohort study of 610 fetuses with a broad range of structural anomalies, diagnostic or potentially clinically relevant variants were identified in 76 (12.5%) fetuses (Lord et al., 2019). Supplementing chromosomal microarray with exome sequencing substantially increased the number of fetuses diagnosed with genetic variants associated with developmental disorder genes (Lord et al., 2019). However, such likely pathogenic variants pose major challenges for prenatal counseling and decision-making. Prenatal exome sequencing testing is a phenotype-driven diagnosis, and fetal phenotype identification depends on ultrasound and MRI. Prenatal imaging should seek as many phenotypes associated with the variants or poor prognoses (such as CV dysplasia) as possible, especially for variants of unknown significance. The more sufficient the phenotypic evidence, the more accurate the prenatal guidance should be. However, ultrasound is not really reliable enough, and an MRI is preferable if available, especially in the aspect of a fetal nervous system.
(2) The diagnosis of JS is primarily based on clinical symptoms, such as hypotonia in infancy with later development of ataxia and developmental delays or intellectual disability. However, such symptoms cannot be assessed or predicted with prenatal imaging, which is a structural rather than a functional examination. Complex phenotypes emerge as infants’ age, and thus, the evaluation of the phenotype–genotype relationship is incomplete in the prenatal period. Different gene variants of JS can lead to varied and complex clinical phenotypes that may not all be present at the time of diagnosis. Some phenotypes present more often in infancy, or even in childhood or later, such as progressive liver fibrosis and nephronophthisis with onset in late childhood or later (Doherty et al., 2010) (Kumada et al., 2004). Therefore, phenotype–genotype relationships cannot be fully identified in prenatal evaluations.
(3) JS shares the same pathogenic genes with other diseases. Meckel syndrome shares at least 18 causative pathogenic genes with JS, which might explain the striking clinical overlap between these two disorders (Adam et al., 1993) (Bachmann-Gagescu et al., 2015). Because of this, it is difficult to distinguish Meckel syndrome from JSRD based on clinical phenotypes and genetic testing, especially prenatally. MTS is an essential sign in distinguishing JS from other disorders. However, not all MTS can be correctly identified by prenatal imaging, especially by ultrasound. First, MTS may be visualized as early as 22 weeks by 2D and 3D ultrasound in fetuses without a prior family history of JS (Quarello et al., 2014); however, the CV may not cover the fourth ventricle before 18 weeks yet, so it remains difficult to detect MTS in an early pregnancy when there is no pregnancy history of JS or phenotypes of ciliopathy (Bromley et al., 1994). In this study, MTS was detected at 17–18 gestational weeks by ultrasound in two cases (case 3 and case 7) (Figures 2A,D). In case 3, the mother had a pregnancy history of JS and polydactyly, and case 7 presented with polycystic kidney disease (Figures 2B,C). Second, the direction of the superior peduncles may vary with the severity of CV hypoplasia and MTS (Poretti et al., 2011), which may be related to different pathogenic genes. Third, the limitations to imaging technology and lack of experience of radiologists may lead to the misdiagnosis of MTS in prenatal imaging. At present, the sensitivity and specificity of prenatal imaging in the diagnosis of JS are unclear.
FIGURE 2. Prenatal imaging features of the fetus in case 7. (A) (D) MTS (white arrow) was detected by US and MRI. The fourth ventricle presented as “elongated” (red circle) on US and MRI. (B) (C) Bilateral polycystic kidneys (★) were identified by ultrasound.
Conclusion
To a certain degree, prenatal imaging can identify MTS and identify imaging phenotypes. Despite challenges in the accurate prenatal diagnosis of JS, the development of molecular diagnosis and imaging technology may facilitate the diagnosis of genetic disorders in the future so that better guidance can be provided in prenatal counseling.
Data availability statement
The original contributions presented in the study are included in the article/Supplementary Materials; further inquiries can be directed to the corresponding author.
Ethics statement
The studies involving human participants were reviewed and approved by the Ethics Committee of Guangdong Women and Children Hospital. The patients/participants provided their written informed consent to participate in this study. The animal study was reviewed and approved by the Ethics Committee of Guangdong Women and Children Hospital. Written informed consent was obtained from the individual(s) for the publication of any potentially identifiable images or data included in this article.
Author contributions
L-XH and Y-CO perform with data collection and collation. J-XL collected patient’s information. X-GL and L-XH analyzed and interpreted the data and then constructed the manuscript. NS and LG conducted the design of the project and reviewed the manuscript.
Funding
This work was supported by the Project on Research and Development in an important field of Guangdong Province (2020B1111130002).
Acknowledgments
The authors are grateful to the patient and his family for their genuine support.
Conflict of interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Publisher’s note
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Keywords: Joubert syndrome, phenotypes, genotypes, prenatal, imaging
Citation: Huang L-X, Lu X-G, Liu J-X, Xu L, Shang N, Guo L and OuYang Y-C (2022) Case report and a brief review: Analysis and challenges of prenatal imaging phenotypes and genotypes in Joubert syndrome. Front. Genet. 13:1038274. doi: 10.3389/fgene.2022.1038274
Received: 06 September 2022; Accepted: 31 October 2022;
Published: 18 November 2022.
Edited by:
Can Ding, Institut für Humangenetik, GermanyReviewed by:
Gavin John Clowry, Newcastle University, United KingdomLiangzhong Sun, Southern Medical University, China
Copyright © 2022 Huang, Lu, Liu, Xu, Shang, Guo and OuYang. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Ning Shang, shangninggdsfy@163.com