Martina Johnson Pokorná
Radka Reifová- 1Department of Zoology, Charles University, Prague, Czech Republic
- 2Department of Ecology, Charles University, Prague, Czech Republic
- 3Institute of Animal Physiology and Genetics, Czech Academy of Sciences, Liběchov, Czech Republic
B chromosomes represent additional chromosomes found in many eukaryotic organisms. Their origin is not completely understood but recent genomic studies suggest that they mostly arise through rearrangements and duplications from standard chromosomes. They can occur in single or multiple copies in a cell and are usually present only in a subset of individuals in the population. Because B chromosomes frequently show unstable inheritance, their maintenance in a population is often associated with meiotic drive or other mechanisms that increase the probability of their transmission to the next generation. For all these reasons, B chromosomes have been commonly considered to be nonessential, selfish, parasitic elements. Although it was originally believed that B chromosomes had little or no effect on an organism’s biology and fitness, a growing number of studies have shown that B chromosomes can play a significant role in processes such as sex determination, pathogenicity and resistance to pathogens. In some cases, B chromosomes became an essential part of the genome, turning into new sex chromosomes or germline-restricted chromosomes with important roles in the organism’s fertility. Here, we review such cases of “cellular domestication” of B chromosomes and show that B chromosomes can be important genomic players with significant evolutionary impact.
Introduction
B chromosomes are supernumerary dispensable chromosomes that occur only in some individuals or populations within a species, or only in a subset of cells or tissues within an individual (Beukeboom, 1994; Camacho, 2005; Houben et at., 2014; Ruban et al., 2020). Their presence in a species can thus be viewed as a type of genetic polymorphism. Unlike standard chromosomes, they often show irregular non-Mendelian inheritance (Jones, 1995). B chromosomes were observed for the first time by Wilson (1907) in true bugs (Hemiptera) from the genus Metapodius. Soon after, similar observations were published for cucumber beetles (Coleoptera) from the genus Diabrotica (Stevens, 1908). In plants, such structures were first observed in rye (Secale cereale) and named “k-chromosomes” by Gotoh (1924), and later described in maize (Zea mays) by Kuwada (1925) and Longley (1927) who labelled them as “supernumerary chromosomes.” The term “B chromosomes” was introduced by Randolph (1928) and has been used by the scientific community ever since. In synchrony, all the other chromosomes in the genome are referred to as “A chromosomes”.
Based on the number of species studied so far it has been estimated that approximately 15% of eukaryotic species have B chromosomes (Beukeboom, 1994; D’Ambrosio et al., 2017) with new findings of B chromosomes being regularly described (reviewed in Jones, 2017). A database collecting information about B chromosomes has been available since 2017 (D’Ambrosio et al., 2017). Out of the 2,828 eukaryotic species with B chromosomes reported there, 73.56% are plants, 25.95% animals and 0.49% fungi (D’Ambrosio et al., 2017). However, it is important to note that some groups of organisms have been cytogenetically studied less extensively than others and thus the representation of B chromosomes among specific taxonomic groups is currently difficult to compare (D’Ambrosio et al., 2017).
B chromosomes can occur in single or multiple copies per cell but usually their copy number is rather low. There is normally either one or a few copies of B chromosomes functioning usually as univalents (Camacho, 2005). However, in some species, extreme numbers of B chromosomes can be observed in a single cell, such as in some plant species of the genus Pachyphylum (Crassulaceae), which have up to 50 B chromosome copies (Uhl and Moran, 1973). Other organisms with high numbers of B chromosomes are maize (Z. mays) with up to 34 copies (Jones and Rees, 1982), the wood mouse (Apodemus peninsulae) with up to 24 copies (Volobuev and Timina, 1980) and the Xylota nemorum fly with up to 24 B chromosomes copies (Boyes and van Brink, 1967). In some cases, extensive variability in the number of B chromosomes can be observed among individuals or populations within a species (Camacho et al., 2000). It has been reported that these high numbers of B chromosomes could have negative effects on their hosts, particularly on their fertility and viability (Houben, 2017), especially if the B chromosomes occur in odd numbers (Camacho et al., 2004).
B chromosomes show high variability in their size across species. They can be similar in size to A chromosomes (Jones, 2018) but also, in some species, B chromosomes are considerably smaller than the smallest A chromosomes e.g., in the harvest mouse Reithrodonomys megalotis (Peppers et al., 1997) or the fly Megaselia scalaris (Wolf et al., 1991). On the other hand, B chromosomes bigger than the biggest A chromosomes have been reported in cyprinid fish Alburnus alburnus (Ziegler et al., 2003), the giant white-tailed rats Uromys caudimaculatus (Baverstock et al., 1982) and the characid fish Aslyanax scabripinnis (Mestriner et al., 2000). Variation in size can also be observed within a species e.g. in the grasshopper Eyprepocnemis plorans (López-León et al., 1993).
B chromosomes were for a long time considered to have no important function for the carrier individual and spread mostly as genome parasites (e.g., Ӧstergren, 1945; Van Valen, 1977). Currently, however, the view of B chromosomes is changing with many active B chromosome genes with important functions for their hosts being discovered (reviewed in Houben et al., 2014; Ruban et al., 2017, Dala Benetta et al., 2020). Based on these findings, it has been proposed that the effects of B chromosomes on their host may shift back and forth from parasitic or neutral to beneficial (Camacho et al., 2000). In some species, it has been even hypothesised that B chromosomes may became an essential, stable part of the genome turning, for example, into new sex chromosomes or chromosomes restricted to germline that became essential for viability and fertility of their carriers (Carvalho, 2002; Nokkala et al., 2003; Dalíková et al., 2017; Torgasheva et al., 2019; Imarazene et al., 2021; Lewis et al., 2021). In this review we describe mechanisms of B chromosome origin, strategies of their inheritance and give examples of the “cellular domestication” of B chromosomes, where these chromosomes provide some important functions for their hosts. We reviewed possible pathways of B chromosome evolutionary dynamics with outcomes ranging from the classical view of B chromosomes as nonessential genetic elements spreading in the population as genomic parasites to important genomic players providing benefits to their hosts.
Origin of B Chromosomes
The question of where B chromosomes come from has been puzzling researchers since their discovery. Currently, the most likely explanation is that B chromosomes originate from A chromosomes as by-products of chromosomal rearrangements or unbalanced segregation, when a chromosome fragment or an extra copy of an A chromosome may develop into a proto-B chromosome (Peters, 1981; Jones and Rees, 1982; Talavera et al., 1990; Camacho et al., 2000; Mestriner et al., 2000; Dhar et al., 2002; Bauerly et al., 2014). Once a proto-B chromosome exists it may acquire additional genetic material through duplications from other A chromosomes (Martis et al., 2012; Marques et al., 2018; Ahmad et al., 2020; Blavet et al., 2021). Throughout the evolution of B chromosomes, various mobile elements and unique coding and noncoding sequences can be incorporated, sometimes amplifying and sometimes degenerating due to the very small selection pressure on the B chromosome (reviewed in Houben et al., 2014; Marques et al., 2018). Next-generation sequencing of B chromosomes in various species confirmed that these chromosomes are largely composed of A chromosome paralogous sequences, although in some plant species organellar DNA has also been shown to contribute to the B chromosomes (Valente et al., 2014; Ruban et al., 2017; Marques et al., 2018; Ruiz Ruano et al., 2018). For example, in rye (S. cereale), one of the best-studied plant models for B chromosome research, B chromosomes seem to harbor A chromosome derived sequences, mostly coming from 3R to 7R autosomes, with a significant contribution of organellar DNA (Martis et al., 2012). Similarly, in the goat grass Aegilops speltoides, B chromosomes share sequences not only with A chromosomes but also with the DNA of plastids and mitochondria, suggesting that organelle-to-nucleus DNA transfer affects B chromosome evolution (Ruban et al., 2014; Ruban et al., 2020). The level of homology between B chromosomal and A chromosomal paralogous sequences can be used to estimate the age of B chromosomes. In maize (Z. mays), such comparison revealed the very ancient origin of the B chromosomes (Blavet et al., 2021).
In several species, B chromosomes appear to have originated from sex chromosomes. This seems to have happened for example in the flies from the genus Glossina, the New Zealand endemic frog Leiopelma hochstetteri (reviewed in Camacho, 2005) and the grasshopper E. plorans, where the B chromosome is derived from a paracentromeric region of the X chromosome (López León et al., 1994). The involvement of sex chromosomes in the origin of B chromosomes has been also demonstrated in the rodent group Oryzomyini (Ventura et al., 2015).
Although it seems to be rare, B chromosomes may also originate through interspecific hybridization. This has been described for jewel wasps Nasonia vitripennis. This species-specific B chromosome known as Paternal Sex Ratio (PSR) contains transposon-like sequences that appear to be absent from the N. vitripennis genome, but match sequences present in another two species of wasp from the genus Trichomalopis (McAllister, 1995; McAllister and Werren, 1997). This observation suggests that this B chromosome has been derived from a chromosome of another species that moved into the N. vitripennis genome by hybridization (McAllister, 1995; McVean, 1995; McAllister and Werren, 1997; Perfectti and Werren, 2001).
B chromosomes may also have their origin in incompletely expelled A chromosome from the sperm in pseudogamous parthenogens as documented in flatworms Polycelis nigra. In this species, sexual individuals are always diploid while pseudogamous parthenogens are usually triploid. In parthenogenetic individuals a sperm is required only to initiate the egg development and the paternal chromosomes never enter the oocyte nucleus. In purely parthenogenetic populations of this species, B chromosomes of three distinct subtypes were found in almost all individuals. These B chromosomes come from paternal A chromosomes which escaped the exclusion of the sperm genome and have been incorporated into the nucleus (Beukeboom et al., 1996; Sharbel at al., 1997).
B Chromosomes as Genomic Parasites
Traditionally, B chromosomes have been viewed as genomic parasites that do not provide any advantage to their host and sometimes can even be detrimental if they are present in high copy numbers (Camacho et al., 2004). Because their meiotic as well mitotic inheritance may be unstable especially if they occur in an odd copy number, B chromosomes evolved diverse ways to promote their own transmission, preventing their loss from the population. These include meiotic drive, mitotic drive associated with gonotaxis and preferential fertilization of the ovum by B chromosome carrying spermatozoa.
Meiotic drive (Figure 1A,B) promoting the transmission of B chromosomes can occur during female as well as male meiosis. Female meiotic drive (Figure 1A) is, however, more common (Jones, 2018). It stems from the asymmetry of female meiosis, where one ovum and three polar bodies (which do not participate in inheritance) are produced from a single diploid oogonia. Many B chromosomes have been shown to have a mechanism helping them to end up in the ovum rather than in a polar body (reviewed in Jones, 2018). Female meiotic drive is often associated with specific centromeric sequences, as centromeres bind to the meiotic spindle during chromosome segregation (Padro-Manuel De Villena and Sapienza, 2001). However, sometimes the total number of centromeres in each side of the meiotic spindle, rather than specific centromeric sequences, determine which chromosomes will end up in the egg and which in polar bodies (Padro-Manuel De Villena and Sapienza, 2001). If a higher number of centromeres preferentially segregate to the egg, the presence of an additional B chromosome bringing one extra centromere, may cause B chromosomes to preferentially segregate to the gamete. Generally, such a type of meiotic drive based on the total number of centromeres may also lead to a chromosome fission and the origin of acrocentric chromosomes from metacentric chromosomes (Padro-Manuel De Villena and Sapienza, 2001. Interestingly, it has been observed in mammals and insects that B chromosomes occur more often in species with acrocentric rather than metacentric chromosomes (Bidau and Martí, 2004; Palestis et al., 2004; Palestis et al., 2010), suggesting that female meiotic drive based on total number of centromeres may help to spread B chromosomes in a population. However, we cannot rule out the possibility that acrocentric chromosomes simply generate B chromosomes more frequently than metacentric chromosomes.
FIGURE 1. Depiction of transmission mechanisms of B chromosomes. (A) and (B) represent meiotic drive. (A)–female meiotic drive where the B chromosome segregates preferentially into the egg, (B)–male meiotic drive where sperms without B do not survive. (C) and (D) represent mitotic drive associated with gonotaxis where B chromosomes preferentially segregate into the germline (C)–premeiotic mitotic drive during early embryo development when the germline is being determined, (D)–postmeiotic mitotic drive in plants during gametophytic phase. Blue represents B chromosomes and grey represents A chromosomes.
B chromosomes can also increase their transmission by male meiotic drive (Figure 1B), where haploid cells without B chromosomes do not survive, although it seems to be much rarer than female meiotic drive (Jones and Rees, 1982). A specific case of male meiotic drive was described in the mealybug Pseudococcus affinis. In this species, paternally inherited chromosomes become heterochromatic during early embryonic development. During male meiosis, paternal and maternal chromosomes segregate to different poles and only meiotic products with euchromatic maternal chromosomes form functional sperm. The B chromosome, although paternally inherited, segregates with the maternal chromosomes and ends up in the functional sperm (Nur, 1962).
Mitotic drive leading to the preferential segregation of B chromosomes to the germline (gonotaxis) (Figure 1C,D) may also increase the chance of B chromosome transmission to the next generation. At the same time, it can lead to the multiplication of B chromosome copies in the cell. Mitotic drive occurs through the nondisjunction of B chromosomes during mitosis (Jones, 1991). It can happen before meiosis during the germline cell division and in plants also after meiosis during the gametophytic phase. Premeiotic mitotic drive (Figure 1C) was described for the first time in the grasshoppers Calliptamus palaestinensis and Cammula pelucida (Nur, 1963; Nur, 1969) and leads to an amplification of B chromosomes in spermatocytes. Similar phenomenon was later observed in other animals and plants (Rutishauser and Rӧthlisberger, 1966; Kayano, 1971; Viseras et al., 1990; Pardo et al., 1995; Jones, 2018). The postmeiotic mitotic drive (Figure 1D) is known from plants which have, compared to animals, a haploid gametophyte phase (reviewed by Houben, 2017). This type of drive was first observed by Hasegawa (1934) in rye, where the B chromosome moved with its two nondisjunct chromatids towards the generative nucleus in the first pollen grain mitosis. The nondisjunction in rye is controlled by the region on the long arm of the B chromosome where various tandem repeats have been identified (reviewed in Houben et al., 2014; Marques et al., 2018).
In some plants, the overtransmission of B chromosomes can be caused by preferential fertilization of the ovum by the B-carrying spermatozoid (Jones, 2018). This has been observed for example in maize, where mitotic drive at the second pollen mitosis caused by nondisjunction of B chromosome chromatids results in two unequal sperms. The egg is then preferentially fertilized by the sperm bearing the B chromosome during double fertilization (Blavet et al., 2021).
Although different mechanisms of unequal transmission already play very powerful roles in B chromosome inheritance, some B chromosomes found a way to enhance the drive effect. For example, some cichlid fish from Lake Victoria and Malawi carry a female-specific B chromosome (Yoshida et al., 2011; Clark and Kocher, 2019), which exhibits meiotic drive ending up in more than half of oocytes. Interestingly, offspring of B-transmitting females show a strong female biased sex ratio and genotyping of these offspring revealed that the B chromosome carries a female sex determining gene that is epistatically dominant to an XY system. Therefore, the outcome is that an XY fish with a B chromosome becomes a female and an XY fish without a B chromosome becomes a male. It has been suggested that the new sex determining function of the B chromosome evolved to enhance the female meiotic drive of the B chromosome without providing any beneficial effect to the host (Clark and Kocher, 2019).
Another example of the B chromosome, which can manipulate the sex of its carrier to enhance its own transmission, is PSR known from the jewel wasp N. vitripennis and other haplodiploid arthropods (Werren et al., 1987; Werren, 1991; Werren and Beukeboom, 1993; Werren and Stouthamer, 2003). PSR is transmitted strictly paternally and causes the complete elimination of the paternal chromosomes (except for the PSR itself) after fertilization (Reed and Werren, 1995; Dalla Benetta et al., 2020). As a result, all diploid fertilized eggs which would normally develop into females are turned into males causing an extremely male biased sex ratio (Werren and Beukeboom, 1993; Werren and Stouthamer, 2003).
B chromosomes might also be involved in the genetic control of apomixis (e.g., asexual reproduction via seeds). This has been described in Boechera stricta and B. holboellii (Brassicaceae). In these species, there is an additional Het chromosome which in some cases went through fission resulting in a largely heterochromatic Het’ chromosome in all apomictic individuals and a smaller Del chromosome in aneuploid apomictic individuals. Because these chromosomes are present exclusively in apomictic plants, it has been suggested that they could play a role in the genetic control of apomixis (Sharbel et al., 2004; Kantama et al., 2007; Mandáková et al., 2015). As asexual reproduction can ensure maintaining the stable combination of chromosomes, B chromosomes involved in the transition to asexuality could theoretically gain advantage in their own transmission. However, Mandáková et al. (2021) argued that these chromosomes may be more a consequence of apomixis rather than its cause.
New genomic approaches enabling the sequencing of B chromosomes allow the identification of specific genes and regions on the B chromosome causing the drive (Dalla Benetta et al., 2020). A nice example of a gene involved in its own drive is the haploidizer located on PSR in N. vitripennis which is responsible for the elimination of paternal chromosomes except for PSR (Dalla Benetta et al., 2020). Banaei-Moghaddam et al. (2012) and Banaei-Moghaddam et al. (2013) identified the B-specific centromeric sequence responsible for the extended cohesion of the B chromatids during the first pollen mitosis and their preferential segregation to the generative nucleus in rye. Using whole B chromosome assembly, Blavet et al. (2021) determined regions on the maize B chromosome including B chromosome-specific repeat concentrated around the centromere and trans-acting factors on the long arm involved in B chromosome nondisjunction at the second pollen mitosis. Interestingly, centromeric region also played a role in a preferential fertilization of the egg by sperm carrying B-specific centromere (Blavet et al., 2021). In addition, in several organisms, genes involved in cell cycle, cell division, chromosome segregation or cell differentiation have been identified on B chromosomes (Graphodatsky et al., 2005; Makunin et al., 2016; Navarro Domínguez et al., 2017; Makunin et al., 2018; Marques et al., 2018; Kichigin et al., 2019; Martins and Jehangir, 2021). These might represent candidate genes for B chromosome drive. The origin of such sequences promoting the B chromosome transmission is assumed to play an important role during early B chromosome evolution (Houben et al., 2014). Without such sequences the B chromosome is likely destined to be lost from the population if it does not provide any advantage to the host (Camacho et al., 2000; Ahmad et al., 2020).
Cellular Domestication of B Chromosomes
As described in the previous section, for a long time B chromosomes were mostly viewed as nonessential selfish elements which had either no effect on the host or a negative one, and spread through the population solely as genome parasites. However, there is accumulating evidence that B chromosomes in many organisms carry important functions for their hosts, which can help them to spread in the population without selfish mechanisms such as drive (Table 1).
TABLE 1. List of examples where B chromosomes have a beneficial or necessary function for their hosts.
A well-known case where a B chromosome is beneficial for its carrier can be seen in the chive plant Allium schoenoprasum. It has been observed that individuals with B chromosomes have better survival rates in their natural habitats than those without them. These B chromosomes have a positive effect on the development from seeds as they boost the germination rate in drought conditions (Holmes and Bougourd, 1989; Plowman and Bougourd, 1994) It is interesting that in A. schoenoprasum no mechanisms of drive have been found (Bougourd and Parker, 1979; Holmes and Bougourd, 1989), suggesting that the presence of B chromosomes in a population may be maintained by their positive effect on the carrier. A higher survival rate of plants with B chromosome compared to those without it was observed also in ryegrass, Lolium peremne (Rees and Hutchinson, 1974). In rye a comparison between individuals with and without B chromosomes suggests that rye B chromosomes may play a role in heat tolerance and may protect plants against damage caused by heat stress (Pereira et al., 2017).
In the fungus Nectria haematococca, resistance to antibiotics, which are naturally produced by pea plants, is associated with the presence of B chromosomes which show stable inheritance under certain conditions (Miao et al., 1991; Enkerli et al., 1997). These B chromosomes thus increase the pathogenicity of their host. Observations of an increase in pathogenicity under the influence of a B chromosome has also been demonstrated in other fungi species e.g., in Magnaporthe oryzae, Fusarium oxysporum, F. sp. radicis-cucumerinum, Alternaria alternata, Cochliobolus heterostrophus and Leptoshaeria maculans (Ma et al., 2010; Balesdent et al., 2013; van Dam et al., 2017). Interestingly, sequencing of the fungal B chromosomes revealed that these chromosomes display different genomic properties compared to the A chromosomes, including faster evolutionary rates, higher density of transposable elements and more gene duplications (Vanheule et al., 2016; Yang et al., 2020). It has been suggested that such a “two-speed” genome may bring an advantage to the pathogens by allowing more rapid adaptations to the host and new environments through more frequent mutations on the faster evolving B chromosomes (Croll and McDonald 2012). B chromosomes can also increase the resistance of their host to pathogens, such as, for example, in the oat plant, Avena sativa, where they increase the resistance of the plants to rust caused by the fungus Puccinia coronata f. sp. avenae (Dherawattana and Sadanaga, 1973).
It has been proposed that B chromosomes can become involved in sex determination and start to function as sex chromosomes (e.g., Camacho, 2005). Although, this crucial function can at the beginning represent a way how to enhance the B chromosome transmission as has been described in some cichlid fish (Clark and Kocher, 2019), it can later become essential for the host. In addition, the B chromosome can theoretically turn into a sex chromosome when it starts to pair with the X or Z in the system where Y or W is not present (i.e. X0 or Z0). Possible examples of such B to sex chromosome transition have been described in moth and butterfly species (Lepidoptera). Lukhtanov (2000) mentioned examples, which may represent different phases of such evolutionary transition, from the stage where a newly formed W chromosome (originally B chromosome) is still dispensable and individuals with or without it can be found in a population, to the stage where the W chromosome has the sex determining function and is fully fixed and essential. Although these examples support the possibility of the sex chromosome origin within B chromosomes, Lukhtanov (2000) provides alternative explanations of these observations. Also, in the family Tischeriidae and in the clade Ditrysia (Lepidoptera), the W possibly arose from a B chromosome which started to pair with the Z chromosome (Dalíková et al., 2017). However, a possibility that at least in Tischeriidae W chromosome evolved from the fusion of a Z chromosome and an autosome has not been ruled out (Dalíková et al., 2017; Hejníčková et al., 2019). Recent data from genome sequencing in another butterfly species Dryas iulia (tribe Heliconiini) support the origin of a W sex chromosome from a B chromosome and suggest that this event may have happened multiple times during the evolution of butterflies (Lewis et al., 2021). It has also been proposed that the ancestral Y chromosome in Drosophila may have originated from a B chromosome (Hackstein et al., 1996; Carvalho, 2002). None of the Y-linked genes in Drosophila have homologs on the X chromosome and all identified paralogs are autosomal. This implies that the origin and evolutionary history of the Y chromosome is different than simply being a degenerated counterpart of the X chromosome and Carvalho (2002) proposed that it could have its origin in a B chromosome that became a segregational partner of the X chromosome in an X0 system. However, it is also possible that the present Y in Drosophila could be an outcome of a fusion of an ancestral Y chromosome with an autosome (Bachtrog, 2013). In the plant lice Cacopsylla peregrina, the Y chromosome has most likely evolved from a B chromosome that was integrated into a segregation system with the X chromosome and later became fixed in the karyotype (Nokkala et al., 2003). In some cases, such as in the cichlid fish from the tribe Oreochromini, the B chromosome fused with the original sex chromosomes and become a stable part of the genome (Conte et al., 2021). In the cavefish Astyanax mexicanus the B chromosome contains a gene which determines male sex and therefore the B chromosome functions as a sex chromosome with a dominant male determining role (Imarazene et al., 2021).
In passerine birds (Passeriformes), an extra chromosome has been observed in the germline. This germline-restricted chromosome (GRC) is excluded by programmed DNA elimination from somatic cells during early embryogenesis (Wang and Davis, 2014). The GRC was first described in the zebra finch (Taenopygia guttata) (Pigozzi and Solari, 1998), and it has been revealed recently that it is likely present in all passerine birds (Passeriformes) (Kinsella et al., 2019; Torgasheva et al., 2019). The GRC is present in two copies in oocytes forming a bivalent that undergoes recombination. In contrast, in spermatocytes there is only a single copy of this chromosome which forms a heterochromatic element that is eliminated from the nucleus during the first meiotic division (Schoenmakers et al., 2010; del Priore and Pigozzi, 2014). Camacho et al. (2000) suggested that the GRC may be originally a supernumerary B chromosome which acquired an essential function for birds, possibly a germline determining role, preventing its loss. Genomic analysis of the GRC in zebra finch revealed that similarly as in B chromosomes, most GRC-linked genes are paralogs to genes on A chromosomes, which have been subsequently added to the GRC during passerine evolution (Kinsella et al., 2019). Like B chromosomes, GRC shows high variability in size ranging from the largest chromosome in the karyotype in some species to microchromosome in others (Torgasheva et al., 2019). Dedukh and Krasikova (2021) pointed out yet another similarity which can be found in the programed GRC elimination from somatic cells which strongly resembles mechanisms of tissue-specific B chromosome elimination as described in goatgrass Aegilops speltoides where the B chromosome is eliminated from roots (Ruban et al., 2020).
Evolutionary Dynamics of B Chromosomes
Originally, two theoretical models were proposed to explain the occurrence of B chromosomes in populations and their maintenance in relatively stable frequencies. The first model assumed the spread of B chromosomes by some selfish drive mechanisms, opposed by negative effects of the B chromosomes on the carrier’s fitness if they are in high copy numbers (Jones 1995; Camacho et al., 2000). The second model (White, 1973) proposed that B chromosomes may be maintained in the population without drive mechanisms if they have a beneficial effect on their carriers in small numbers but start to be detrimental in high copy numbers. Empirical data reviewed in this paper supports both models providing evidence for the selfish spread of B chromosomes in populations through drive in many species (Hasegawa, 1934; Nur, 1962; Nur, 1963; Rutishauser and Rӧthlisberger, 1966; Nur, 1969; Kayano, 1971; Jones and Rees, 1982; Gregg at al., 1984; Murray, 1984; Viseras et al., 1990; Jones, 1991; Pardo et al., 1995; Houben, 2017; Jones, 2018; Clark and Kocher, 2019; Blavet et al., 2021) as well as identifying beneficial effects of B chromosomes for their hosts (Williams, 1970; Dherawattana and Sadanaga, 1973; Rees and Hutchinson, 1974; Holmes and Bougourd, 1989; Miao et al., 1991; Plowman and Bougourd, 1994; Enkerli et al., 1997; Hatta et al., 2002; Nokkala et al., 2003; Rodriguez-Carres et al., 2008; Akagi et al., 2009; Coleman et al., 2009; Ma et al., 2010; Balesdent et al., 2013; Thatcher et al., 2016; Williams et al., 2016; Dalíková et al., 2017; Pereira et al., 2017; van Dam et al., 2017; Armitage et al., 2018; Kinsella et al., 2019; Torgasheva et al., 2019; Imarazene et al., 2021; Lewis et al., 2021). From the example in rye where B chromosomes have beneficial function but are still driving (Pereira et al., 2017) we see that there could be even co-occurrence of drive and beneficial function which indicates the rather extensive complexity of B chromosome evolution.
As Camacho et al. (1997) suggested, parasitic B chromosomes initially spreading in a population by drive may be neutralized by the evolution of drive suppressors located on the A chromosomes if they harm the hosts. Since the elimination of already common B chromosomes from the population may be slow, the new drive genes may arise on the B before this elimination leading to a new cycle of B chromosome accumulation. The dynamics between B chromosomes and the rest of the genome may thus resemble a classical arms race between a parasite and its host. Certain studied species seem to show this type of dynamic where A chromosomes try to suppress the accumulation of B chromosomes and B chromosomes try to escape this pressure (Bosemark, 1954; Carlson, 1969; Nur and Brett, 1985, Shaw and Hewitt, 1985; Shaw et al., 1985; Nur and Brett, 1987, Nur and Brett, 1988; Romera et al., 1991; Cebriá et al., 1994; Jiménez et al., 1995; Herrera et al., 1996; Rosato et al., 1996; reviewed in Shaw and Hewitt, 1990; Camacho et al., 2000).
The examples collected in this review also suggest that sometimes B chromosomes can become stable and essential parts of the genome by gaining some vital function such as a role in sex determination or germline specific function. In fact, B chromosomes may be predisposed to become sex chromosomes or germline-restricted chromosomes by their selfish mechanisms of transmission including sex-specific meiotic drive and gonotaxis. In some cases, B chromosomes can also become accommodated into the genome by being translocated to autosomes or sex chromosomes as observed in several organisms (e.g., grasshoppers and maize) or could acquire regular behavior during meiosis, when two B chromosomes start to pair, both of which ensures their stable inheritance and maintenance in the population (e.g., Houben et al., 2000; Cabrero et al., 2003; Hsu et al., 2003).
Conclusion
This review aims to portray B chromosomes as highly dynamic elements, with variable effects on their hosts, and rich evolutionary pathways. We are demonstrating that, although it was originally believed that B chromosomes behave mostly as genomic parasites with neutral or negative effects on the host being spread in the population by selfish drive mechanisms, a growing number of studies have shown that they can also have a positive effect on their hosts. Here we collected such examples including cases where B chromosomes increase the pathogenicity of their hosts or increase the survival rate in particular habitats. Moreover, we provide examples where B chromosomes likely became a stable and essential part of the genome by turning into new sex chromosomes or germline-restricted chromosomes. In this light, B chromosomes can be viewed as a reservoir of genetic material for the evolution of important genomic novelties with potentially significant evolutionary impacts.
Author Contributions
MJP: study conception and design, RR: study conception and design. Both authors drafted the manuscript and approved the final version of the article.
Funding
This work was supported by the Czech Science Foundation (grant no. 20-23794S) and Charles University (grant PRIMUS/19/SCI/008).
Conflict of Interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Publisher’s Note
All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.
Acknowledgments
We are very grateful to Manuelita Sotelo, Manon Poignet, Stephen Schlebusch, Dmitrij Dedukh, Christopher Johnson and two reviewers for all their valuable comments and suggestions.
References
Ahmad, S. F., Jehangir, M., Cardoso, A. L., Wolf, I. R., Margarido, V. P., Cabral-de-Mello, D. C., et al. (2020). B Chromosomes of Multiple Species Have Intense Evolutionary Dynamics and Accumulated Genes Related to Important Biological Processes. BMC genomics 21, 1–25. doi:10.1186/s12864-020-07072-1
Akagi, Y., Akamatsu, H., Otani, H., and Kodama, M. (2009). Horizontal Chromosome Transfer, a Mechanism for the Evolution and Differentiation of a Plant-Pathogenic Fungus. Eukaryot. Cel. 8, 1732–1738. doi:10.1128/EC.00135-09
Armitage, A. D., Taylor, A., Sobczyk, M. K., Baxter, L., Greenfield, B. P. J., Bates, H. J., et al. (2018). Characterisation of Pathogen-specific Regions and Novel Effector Candidates in Fusarium Oxysporum F. Sp. Cepae. Sci. Rep. 8, 13530. doi:10.1038/s41598-018-30335-7
Bachtrog, D. (2013). Y-chromosome Evolution: Emerging Insights into Processes of Y-Chromosome Degeneration. Nat. Rev. Genet. 14, 113–124. doi:10.1038/nrg3366
Balesdent, M. H., Fudal, I., Ollivier, B., Bally, P., Grandaubert, J., Eber, F., et al. (2013). The Dispensable Chromosome of Leptosphaeria maculans Shelters an Effector Gene Conferring Avirulence towards Brassica rapa. New Phytol. 198, 887–898. doi:10.1111/nph.12178
Banaei-Moghaddam, A. M., Meier, K., Karimi-Ashtiyani, R., and Houben, A. (2013). Formation and Expression of Pseudogenes on the B Chromosome of rye. The Plant Cell 25, 2536–2544. doi:10.1105/tpc.113.111856
Banaei-Moghaddam, A. M., Schubert, V., Kumke, K., Weiβ, O., Klemme, S., Nagaki, K., et al. (2012). Nondisjunction in Favor of a Chromosome: the Mechanism of rye B Chromosome Drive during Pollen Mitosis. Plant Cell 24, 4124–4134. doi:10.1105/tpc.112.105270
Bauerly, E., Hughes, S. E., Vietti, D. R., Miller, D. E., McDowell, W., and Hawley, R. S. (2014). Discovery of Supernumerary B Chromosomes in Drosophila melanogaster. Genetics 196, 1007–1016. doi:10.1534/genetics.113.160556
Baverstock, P. R., Gelder, M., and Jahnke, A. (1982). Cytogenetic Studies of the Australian Rodent, Uromys caudimaculatus, a Species Showing Extensive Heterochromatin Variation. Chromosoma 84, 517–533. doi:10.1007/BF00292853
Beukeboom, L. W. (1994). Bewildering Bs: an Impression of the 1st B-Chromosome Conference. Heredity 73, 328–336. doi:10.1038/hdy.1994.140
Beukeboom, L. W., Seif, M., Mettenmeyer, T., Plowman, A. B., and Michiels, N. K. (1996). Paternal Inheritance of B Chromosomes in a Parthenogenetic Hermaphrodite. Heredity 77, 646–654. doi:10.1038/hdy.1996.192
Bidau, C. J., and Martí, D. A. (2004). B Chromosomes and Robertsonian Fusions of Dichroplus pratensis (Acrididae): Intraspecific Support for the Centromeric Drive Theory. Cytogenet. Genome Res. 106, 347–350. doi:10.1159/000079311
Blavet, N., Yang, H., Su, H., Solanský, P., Douglas, R. N., Karafiátová, M., et al. (2021). Sequence of the Supernumerary B Chromosome of maize Provides Insight into its Drive Mechanism and Evolution. Proc. Natl. Acad. Sci. USA 118, e2104254118. doi:10.1073/pnas.2104254118
Bosemark, N. O. (1954). On Accessory Chromosomes in Festuca pratensis. II. Inheritance of the Standard Type of Accessory Chromosome. Hereditas 40, 425–437.
Bougourd, S. M., and Parker, J. S. (1979). The B-Chromosome System of Allium schoenoprasum. Chromosoma 75, 369–383. doi:10.1007/bf00293478
Boyes, J. W., and van Brink, J. M. (1967). Chromosomes of Syrphidae. Chromosoma 22, 417–455. doi:10.1007/BF00286546
Cabrero, J., Perfectti, F., Gómez, R., Camacho, J. P., and López-León, M. D. (2003). Population Variation in the A Chromosome Distribution of Satellite DNA and Ribosomal DNA in the Grasshopper Eyprepocnemis plorans. Chromosome Res. 11, 375–381. doi:10.1023/a:1024127525756
Camacho, J. P. M. (2005). “B Chromosomes,” in The Evolution of the Genome (Academic Press), 223–286. doi:10.1016/b978-012301463-4/50006-1
Camacho, J. P. M., Perfectti, F., Teruel, M., López-León, M. D., and Cabrero, J. (2004). The Odd-Even Effect in Mitotically Unstable B Chromosomes in Grasshoppers. Cytogenet. Genome Res. 106, 325–331. doi:10.1159/000079307
Camacho, J. P. M., Sharbel, T. F., and Beukeboom, L. W. (2000). B-chromosome Evolution. Phil. Trans. R. Soc. Lond. B 355, 163–178. doi:10.1098/rstb.2000.0556
Carlson, W. R. (1969). Factors Affecting Preferential Fertilization in maize. Genetics 62, 543–554. doi:10.1093/genetics/62.3.543
Carvalho, A. (2002). Origin and Evolution of the Drosophila Y Chromosome. Curr. Opin. Genet. Dev. 12, 664–668. doi:10.1016/s0959-437x(02)00356-8
Cebriá, A., Navarro, M. L., and Puertas, M. J. (1994). Genetic Control of B Chromosome Transmission in Aegilops speltoides (Poaceae). Am. J. Bot. 81, 1502–1507. doi:10.1002/j.1537-2197.1994.tb15636.x
Clark, F. E., and Kocher, T. D. (2019). Changing Sex for Selfish Gain: B Chromosomes of Lake Malawi Cichlid Fish. Sci. Rep. 9, 1–10. doi:10.1038/s41598-019-55774-8
Coleman, J. J., Rounsley, S. D., Rodriguez-Carres, M., Kuo, A., Wasmann, C. C., Grimwood, J., et al. (2009). The Genome of Nectria haematococca: Contribution of Supernumerary Chromosomes to Gene Expansion. Plos Genet. 5, e1000618. doi:10.1371/journal.pgen.1000618
Conte, M. A., Clark, F. E., Roberts, R. B., Xu, L., Tao, W., Zhou, Q., et al. (2021). Origin of a Giant Sex Chromosome. Mol. Biol. Evol. 38, 1554–1569. doi:10.1093/molbev/msaa319
Croll, D., and McDonald, B. A. (2012). The Accessory Genome as a Cradle for Adaptive Evolution in Pathogens. Plos Pathog. 8, e1002608. doi:10.1371/journal.ppat.1002608
D'Ambrosio, U., Alonso‐Lifante, M. P., Barros, K., Kovařík, A., Mas de Xaxars, G., and Garcia, S. (2017). B‐chrom: a Database on B‐chromosomes of Plants, Animals and Fungi. New Phytol. 216, 635–642. doi:10.1111/nph.14723
Dalíková, M., Zrzavá, M., Hladová, I., Nguyen, P., Šonský, I., Flegrová, M., et al. (2017). New Insights into the Evolution of the W Chromosome in Lepidoptera. J. Hered. 108, 709–719. doi:10.1093/jhered/esx063
Dalla Benetta, E., Antoshechkin, I., Yang, T., Nguyen, H. Q. M., Ferree, P. M., and Akbari, O. S. (2020). Genome Elimination Mediated by Gene Expression from a Selfish Chromosome. Sci. Adv. 6, eaaz9808. doi:10.1126/sciadv.aaz9808
Dedukh, D., and Krasikova, A. (2021). Delete and Survive: Strategies of Programmed Genetic Material Elimination in Eukaryotes. Biol. Rev. doi:10.1111/brv.12796
del Priore, L., and Pigozzi, M. I. (2014). Histone Modifications Related to Chromosome Silencing and Elimination during Male Meiosis in Bengalese Finch. Chromosoma 123, 293–302. doi:10.1007/s00412-014-0451-3
Dhar, M. K., Friebe, B., Koul, A. K., and Gill, B. S. (2002). Origin of an Apparent B Chromosome by Mutation, Chromosome Fragmentation and Specific DNA Sequence Amplification. Chromosoma 111, 332–340. doi:10.1007/s00412-002-0214-4
Dherawattana, A., and Sadanaga, K. (1973). Cytogenetics of a Crown Rust‐Resistant Hexaploid Oat with 42 + 2 Fragment Chromosomes 1. Crop Sci. 13, 591–594. doi:10.2135/cropsci1973.0011183X001300060002x
Enkerli, J., Bhatt, G., and Covert, S. F. (1997). Nht1, a Transposable Element Cloned from a Dispensable Chromosome in Nectria haematococca. Mpmi 10, 742–749. doi:10.1094/MPMI.1997.10.6.742
Gotoh, K. (1924). Uuml;ber die Chromosomenzahl von Secale cereale, L. Shokubutsugaku Zasshi 38, 135–152. doi:10.15281/jplantres1887.38.135
Graphodatsky, A. S., Kukekova, A. V., Yudkin, D. V., Trifonov, V. A., Vorobieva, N. V., Beklemisheva, V. R., et al. (2005). The Proto-Oncogene C-KIT Maps to Canid B-Chromosomes. Chromosome Res. 13, 113–122. doi:10.1007/s10577-005-7474-9
Gregg, P. C., Webb, G. C., and Adena, M. A. (1984). The Dynamics of B Chromosomes in Populations of the Australian Plague Locust, Chortoicetes terminifera (Walker). Can. J. Genet. Cytol. 26, 194–208. doi:10.1139/g84-033
Hackstein, J. H. P., Hochstenbach, R., Hauschteck-Jungen, E., and Beukeboom, L. W. (1996). Is the Y Chromosome of Drosophila an Evolved Supernumerary Chromosome? Bioessays 18, 317–323. doi:10.1002/bies.950180410
Hasegawa, N. (1934). A Cytological Study on 8-chromosome rye. Cytologia 6, 68–77. doi:10.1508/cytologia.6.68
Hatta, R., Ito, K., Hosaki, Y., Tanaka, T., Tanaka, A., Yamamoto, M., et al. (2002). A Conditionally Dispensable Chromosome Controls Host-specific Pathogenicity in the Fungal Plant Pathogen Alternaria alternata. Genetics 161, 59–70. doi:10.1093/genetics/161.1.59
Hejníčková, M., Koutecký, P., Potocký, P., Provazníková, I., Voleníková, A., Dalíková, M., et al. (2019). Absence of W Chromosome in Psychidae Moths and Implications for the Theory of Sex Chromosome Evolution in Lepidoptera. Genes 10, 1016. doi:10.3390/genes10121016
Herrera, J. A., López-León, M. D., Cabrero, J., Shaw, M. W., and Camacho, J. P. M. (1996). Evidence for B Chromosome Drive Suppression in the Grasshopper Eyprepocnemis plorans. Heredity 76, 633–639. doi:10.1038/hdy.1996.90
Holmes, D. S., and Bougourd, S. M. (1989). B-chromosome Selection in Allium schoenoprasum. I. Natural Populations. Heredity 63, 83–87. doi:10.1038/hdy.1989.78
Houben, A. (2017). B Chromosomes - A Matter of Chromosome Drive. Front. Plant Sci. 08, 210. doi:10.3389/fpls.2017.00210
Houben, A., Banaei-Moghaddam, A. M., Klemme, S., and Timmis, J. N. (2014). Evolution and Biology of Supernumerary B Chromosomes. Cell. Mol. Life Sci. 71, 467–478. doi:10.1007/s00018-013-1437-7
Houben, A., Wanner, G., Hanson, L., Verlin, D., Leach, C. R., and Timmis, J. N. (2000). Cloning and Characterisation of Polymorphic Heterochromatic Segments of Brachycome dichromosomatica. Chromosoma 109, 206–213. doi:10.1007/s004120050430
Hsu, F. C., Wang, C. J., Chen, C. M., Hu, H. Y., and Chen, C. C. (2003). Molecular Characterization of a Family of Tandemly Repeated DNA Sequences, TR-1, in Heterochromatic Knobs of maize and its Relatives. Genetics 164, 1087–1097. doi:10.1093/genetics/164.3.1087
Imarazene, B., Du, K., Beille, S., Jouanno, E., Feron, R., Pan, Q., et al. (2021). A Supernumerary “B-sex” Chromosome Drives Male Sex Determination in the Pachón Cavefish, Astyanax mexicanus. Curr. Biol. doi:10.1016/j.cub.2021.08.030
Jiménez, M. M., Romera, F., Gallego, A., and Puertas, M. J. (1995). Genetic Control of the Rate of Transmission of rye B Chromosomes. II. 0B × 2B Crosses. Heredity 74, 518–523. doi:10.1038/hdy.1995.73
Jones, N. (2017). New Species with B Chromosomes Discovered since 1980. Nucleus 60, 263–281. doi:10.1007/s13237-017-0215-6
Jones, R. N. (1995). B Chromosomes in Plants. New Phytol. 131, 411–434. doi:10.1111/j.1469-8137.1995.tb03079.x
Jones, R. N. (2018). Transmission and Drive Involving Parasitic B Chromosomes. Genes 9, 388. doi:10.3390/genes9080388
Kantama, L., Sharbel, T. F., Schranz, M. E., Mitchell-Olds, T., de Vries, S., and de Jong, H. (2007). Diploid Apomicts of the Boechera holboellii Complex Display Large-Scale Chromosome Substitutions and Aberrant Chromosomes. Proc. Natl. Acad. Sci. 104, 14026–14031. doi:10.1073/pnas.0706647104
Kayano, H. (1971). Accumulation of B Chromosomes in the Germ Line of Locusta migratoria. Heredity 27, 119–123. doi:10.1038/hdy.1971.76
Kichigin, I. G., Lisachov, A. P., Giovannotti, M., Makunin, A. I., Kabilov, M. R., O’Brien, P. C. M., et al. (2019). First Report on B Chromosome Content in a Reptilian Species: The Case of Anolis carolinensis. Mol. Genet. Genomics. 294, 13–21. doi:10.1007/s00438-018-1483-9
Kinsella, C. M., Ruiz-Ruano, F. J., Dion-Côté, A.-M., Charles, A. J., Gossmann, T. I., Cabrero, J., et al. (2019). Programmed DNA Elimination of Germline Development Genes in Songbirds. Nat. Commun. 10, 5468. doi:10.1038/s41467-019-13427-4
Kuwada, Y. (1925). On the Number of Chromosomes in maize. Shokubutsugaku Zasshi 39, 227–234. doi:10.15281/jplantres1887.39.465_227
Lewis, J. J., Cicconardi, F., Martin, S. H., Reed, R. D., Danko, C. G., and Montgomery, S. H. (2021). The Dryas iulia Genome Supports Multiple Gains of a W Chromosome from a B Chromosome in Butterflies. Genome Biol. Evol. 13, evab128. doi:10.1093/gbe/evab128
López-León, M. D., Neves, N., Schwarzacher, T., Heslop-Harrison, J. S., Hewitt, G. M., and Camacho, J. P. (1994). Possible Origin of a B Chromosome Deduced from its DNA Composition Using Double FISH Technique. Chromosome Res. 2, 87–92. doi:10.1007/BF01553487
López-León, M. D., Cabrero, J., Pardo, M. C., Viseras, E., Camacho, J. P. M., and Santos, J. L. (1993). Generating High Variability of B Chromosomes in Eyprepocnemis plorans (Grasshopper). Heredity 71, 352–362. doi:10.1038/hdy.1993.149
Lukhtanov, V. A. (2000). Sex Chromatin and Sex Chromosome Systems in Nonditrysian Lepidoptera (Insecta). J. Zoolog. Syst. 38, 73–79. doi:10.1046/j.1439-0469.2000.382130.x
Ma, L.-J., van der Does, H. C., Borkovich, K. A., Coleman, J. J., Daboussi, M.-J., Di Pietro, A., et al. (2010). Comparative Genomics Reveals mobile Pathogenicity Chromosomes in Fusarium. Nature 464, 367–373. doi:10.1038/nature08850
Makunin, A. I., Kichigin, I. G., Larkin, D. M., O'Brien, P. C., Ferguson-Smith, M. A., Yang, F., et al. (2016). Contrasting Origin of B Chromosomes in Two Cervids (Siberian Roe Deer and Grey Brocket Deer) Unravelled by Chromosome-specific DNA Sequencing. BMC Genomics 17, 618–714. doi:10.1186/s12864-016-2933-6
Makunin, A., Romanenko, S., Beklemisheva, V., Perelman, P., Druzhkova, A., Petrova, K., et al. (2018). Sequencing of Supernumerary Chromosomes of Red Fox and raccoon Dog Confirms a Non-random Gene Acquisition by B Chromosomes. Genes 9, 405. doi:10.3390/genes9080405
Mandáková, T., Ashby, K., Price, B. J., Windham, M. D., Carman, J. G., and Lysak, M. A. (2021). Genome Structure and Apomixis in Phoenicaulis (Brassicaceae; Boechereae). J. Syst. Evol. 59, 83–92. doi:10.1111/jse.12555
Mandáková, T., Schranz, M. E., Sharbel, T. F., de Jong, H., and Lysak, M. A. (2015). Karyotype Evolution in apomictic Boechera and the Origin of the Aberrant Chromosomes. Plant J. 82, 785–793. doi:10.1111/tpj.12849
Marques, A., Klemme, S., and Houben, A. (2018). Evolution of Plant B Chromosome Enriched Sequences. Genes 9, 515. doi:10.3390/genes9100515
Martins, C., and Jehangir, M. (2021). A Genomic Glimpse of B Chromosomes in Cichlids. Genes Genom. 43, 199–208. doi:10.1007/s13258-021-01049-4
Martis, M. M., Klemme, S., Banaei-Moghaddam, A. M., Blattner, F. R., Macas, J., Schmutzer, T., et al. (2012). Selfish Supernumerary Chromosome Reveals its Origin as a Mosaic of Host Genome and Organellar Sequences. Proc. Natl. Acad. Sci. 109, 13343–13346. doi:10.1073/pnas.1204237109
McAllister, B. F. (1995). Isolation and Characterization of a Retroelement from B Chromosome (PSR) in the Parasitic Wasp Nasonia vitripennis. Insect Mol. Biol. 4, 253–262. doi:10.1111/j.1365-2583.1995.tb00031.x
McAllister, B. F., and Werren, J. H. (1997). Hybrid Origin of a B Chromosome (PSR) in the Parasitic Wasp Nasonia vitripennis. Chromosoma 106, 243–253. doi:10.1007/s004120050245
McVean, G. T. (1995). Fractious Chromosomes: Hybrid Disruption and the Origin of Selfish Genetic Elements. Bioessays 17, 579–582. doi:10.1002/bies.950170702
Mestriner, C. A., Galetti, P. M., Valentini, S. R., Ruiz, I. R. G., Abel, L. D. S., Moreira-Filho, O., et al. (2000). Structural and Functional Evidence that a B Chromosome in the Characid Fish Astyanax scabripinnis is an Isochromosome. Heredity 85, 1–9. doi:10.1046/j.1365-2540.2000.00702.x
Miao, V. P., Covert, S. F., and VanEtten, H. D. (1991). A Fungal Gene for Antibiotic Resistance on a Dispensable (“B”) Chromosome. Science 254, 1773–1776. doi:10.1126/science.1763326
Murray, B. G. (1984). The Structure, Meiotic Behaviour and Effects of B Chromosomes in Briza humilis Bieb. (Gramineae). Genetica 63 (3), 213–219.
Navarro-Domínguez, B., Ruiz-Ruano, F. J., Cabrero, J., Corral, J. M., López-León, M. D., Sharbel, T. F., et al. (2017). Protein-coding Genes in B Chromosomes of the Grasshopper Eyprepocnemis plorans. Sci. Rep. 7, 1–12. doi:10.1038/srep45200
Nokkala, S., Grozeva, S., Kuznetsova, V., and Maryanska-Nadachowska, A. (2003). The Origin of the Achiasmatic XY Sex Chromosome System in Cacopsylla peregrina (Frst.) (Psylloidea, Homoptera). Genetica 119, 327–332. doi:10.1023/b:gene.0000003757.27521.4d
Nur, U. (1963). A Mitotically Unstable Supernumerary Chromosome with an Accumulation Mechanism in a Grasshopper. Chromosoma 14, 407–422. doi:10.1007/bf00326786
Nur, U. (1962). A Supernumerary Chromosome with an Accumulation Mechanism in the Lecanoid Genetic System. Chromosoma 13, 249–271. doi:10.1007/bf00577042
Nur, U., and Brett, B. L. H. (1987). Control of Meiotic Drive of B Chromosomes in the Mealybug, Pseudococcus affinis (obscurus). Genetics 115, 499–510. doi:10.1093/genetics/115.3.499
Nur, U., and Brett, B. L. H. (1988). Genotypes Affecting the Condensation and Transmission of Heterochromtic B Chromosomes in the Mealybug Pseudococcus affinis. Chromosoma 96, 205–212. doi:10.1007/bf00302359
Nur, U., and Brett, B. L. H. (1985). Genotypes Suppressing Meiotic Drive of a B Chromosome in the Mealybug, Pseudococcus obscurus. Genetics 110, 73–92. doi:10.1093/genetics/110.1.73
Nur, U. (1969). Mitotic Instability Leading to an Accumulation of B-Chromosomes in Grasshoppers. Chromosoma 27, 1–19. doi:10.1007/BF00326108
Padro-Manuel De Villena, F. P.-M., and Sapienza, C. (2001). Female Meiosis Drives Karyotypic Evolution in Mammals. Genetics 159, 1179–1189. doi:10.1093/genetics/159.3.1179
Palestis, B. G., Burt, A., Jones, R. N., and Trivers, R. (2004). B Chromosomes Are More Frequent in Mammals with Acrocentric Karyotypes: Support for the Theory of Centromeric Drive. Proc. Biol. Sci. 271 Suppl 3, S22–S24. doi:10.1098/rsbl.2003.0084
Palestis, B. G., Cabrero, J., Trivers, R., and Camacho, J. P. M. (2010). Prevalence of B Chromosomes in Orthoptera is Associated with Shape and Number of A Chromosomes. Genetica 138, 1181–1189. doi:10.1007/s10709-010-9509-1
Pardo, M. C., López-León, M. D., Viseras, E., Cabrero, J., and Camacho, J. P. M. (1995). Mitotic Instability of B Chromosomes during Embryo Development in Locusta migratoria. Heredity 74, 164–169. doi:10.1038/hdy.1995.24
Peppers, J. A., Wiggins, L. E., and Baker, R. J. (1997). Nature of B Chromosomes in the Harvest Mouse Reithrodontomys megalotis by Fluorescence in situ Hybridization (FISH). Chromosome Res. 5, 475–479. doi:10.1023/a:1018421114607
Pereira, H. S., Delgado, M., Viegas, W., Rato, J. M., Barão, A., and Caperta, A. D. (2017). Rye (Secale cereale) Supernumerary (B) Chromosomes Associated with Heat Tolerance during Early Stages of Male Sporogenesis. Ann. Bot. 119, 325–337. doi:10.1093/aob/mcw206
Perfectti, F., and Werren, J. H. (2001). The Interspecific Origin of B Chromosomes: Experimental Evidence. Evol. 55, 1069–1073. doi:10.1111/j.0014-3820.2001.tb00624.x10.1554/0014-3820(2001)055[1069:tioobc]2.0.co;2
Peters, G. B. (1981). Germ Line Polysomy in the Grasshopper Atractomorpha similis. Chromosoma 81, 593–617. doi:10.1007/bf00285852
Pigozzi, M. I., and Solari, A. J. (1998). Germ Cell Restriction and Regular Transmission of an accessory Chromosome that Mimics a Sex Body in the Zebra Finch, Taeniopygia guttata. Chromosome Res. 6, 105–113. doi:10.1023/a:1009234912307
Plowman, A. B., and Bougourd, S. M. (1994). Selectively Advantageous Effects of B Chromosomes on Germination Behaviour in Allium schoenoprasum L. Heredity 72, 587–593. doi:10.1038/hdy.1994.81
Reed, K. M., and Werren, J. H. (1995). Induction of Paternal Genome Loss by the Paternal-Sex-Ratio Chromosome and Cytoplasmic Incompatibility Bacteria (Wolbachia): A Comparative Study of Early Embryonic Events. Mol. Reprod. Dev. 40, 408–418. doi:10.1002/mrd.1080400404
Rees, H., and Hutchinson, J. (1974). Nuclear DNA Variation Due to B chromosomes.” in Cold Spring Harbor Symposia on Quantitative Biology, 38. Cold Spring Harbor: Cold Spring Harbor Laboratory Press. doi:10.1101/sqb.1974.038.01.021
Rodriguez-Carres, M., White, G., Tsuchiya, D., Taga, M., and VanEtten, H. D. (2008). The Supernumerary Chromosome of Nectria haematococca that Carries Pea-Pathogenicity-Related Genes Also Carries a Trait for Pea Rhizosphere Competitiveness. Appl. Environ. Microbiol. 74, 3849–3856. doi:10.1128/aem.00351-08
Romera, F., Jiménez, M. M., and Puertas, M. J. (1991). Genetic Control of the Rate of Transmission of rye B Chromosomes. I. Effects in 2B × 0B Crosses. Heredity 66, 61–65. doi:10.1038/hdy.1991.8
Rosato, M., Chiavarino, A. M., Naranjo, C. A., Puertas, M. J., and Poggio, L. (1996). Genetic Control of B Chromosome Transmission Rate in Zea mays ssp. mays (Poaceae). Am. J. Bot. 83, 1107–1112. doi:10.1002/j.1537-2197.1996.tb13890.x
Ruban, A., Fuchs, J., Marques, A., Schubert, V., Soloviev, A., Raskina, O., et al. (2014). B Chromosomes of Aegilops speltoides Are Enriched in Organelle Genome-Derived Sequences. PLoS ONE 9, e90214. doi:10.1371/journal.pone.0090214
Ruban, A., Schmutzer, T., Scholz, U., and Houben, A. (2017). How Next-Generation Sequencing Has Aided Our Understanding of the Sequence Composition and Origin of B Chromosomes. Genes 8, 294. doi:10.3390/genes8110294
Ruban, A., Schmutzer, T., Wu, D. D., Fuchs, J., Boudichevskaia, A., Rubtsova, M., et al. (2020). Supernumerary B Chromosomes of Aegilops speltoides Undergo Precise Elimination in Roots Early in Embryo Development. Nat. Commun. 11, 1–12. doi:10.1038/s41467-020-16594-x
Ruiz-Ruano, F. J., Cabrero, J., López-León, M. D., Sánchez, A., and Camacho, J. P. M. (2018). Quantitative Sequence Characterization for Repetitive DNA Content in the Supernumerary Chromosome of the Migratory Locust. Chromosoma 127, 45–57. doi:10.1007/s00412-017-0644-7
Rutishauser, A., and Rothlisberger, E. (1966). Boosting Mechanism of B-Chromosomes in Crepis capilaris. Chrom. Today 1, 28–30.
Schoenmakers, S., Wassenaar, E., Laven, J. S. E., Grootegoed, J. A., and Baarends, W. M. (2010). Meiotic Silencing and Fragmentation of the Male Germline Restricted Chromosome in Zebra Finch. Chromosoma 119, 311–324. doi:10.1007/s00412-010-0258-9
Sharbel, T. F., Beukeboom, L. W., and Pijnacker, L. P. (1997). Multiple Supernumerary Chromosomes in the Pseudogamous Parthenogenetic flatworm Polycelis nigra: Lineage Markers or Remnants of Genetic Leakage? Genome 40, 850–856. doi:10.1139/g97-810
Sharbel, T. F., Voigt, M.-L., Mitchell-Olds, T., Kantama, L., and De Jong, H. (2004). Is the Aneuploid Chromosome in an Apomictic Boechera holboellii a Genuine B Chromosome? Cytogenet. Genome Res. 106, 173–183. doi:10.1159/000079284
Shaw, M. W., Hewitt, G. M., and Anderson, D. A. (1985). Polymorphism in the Rates of Meiotic Drive Acting on the B-Chromosome of Myrmeleotettix maculatus. Heredity 55, 61–68. doi:10.1038/hdy.1985.72
Shaw, M. W., and Hewitt, G. M. (1990). B Chromosomes, Selfish DNA and Theoretical Models: where Next? Oxf. Surv. Evol. Biol. 7, 197–223.
Shaw, M. W., and Hewitt, G. M. (1985). The Genetic Control of Meiotic Drive Acting on the B Chromosome of Myrmeleotettix maculatus (Orthoptera: Acrididae). Heredity 54, 259–268. doi:10.1038/hdy.1985.25
Stevens, N. M. (1908). The Chromosomes in Diabrotica vittata, Diabrotica soror, Diabrotica 12-punctata. A Contribution to the Literature on Heterochromosomes and Sex Determination. J. Exp. Zool. 5, 453–470. doi:10.1002/jez.1400050402
Talavera, M., López-Leon, M. D., Cabrero, J., and Camacho, J. P. M. (1990). Male Germ Line Polysomy in the Grasshopper Chorthippus binotatus: Extra Chromosomes Are Not Transmitted. Genome 33, 384–388. doi:10.1139/g90-058
Thatcher, L. F., Williams, A. H., Garg, G., Buck, S.-A. G., and Singh, K. B. (2016). Transcriptome Analysis of the Fungal Pathogen Fusarium oxysporum f. sp. medicaginis during colonisation of resistant and susceptible Medicago truncatula hosts Identifies Differential Pathogenicity Profiles and Novel Candidate Effectors. BMC Genomics 17, 860. doi:10.1186/s12864-016-3192-2
Torgasheva, A. A., Malinovskaya, L. P., Zadesenets, K. S., Karamysheva, T. V., Kizilova, E. A., Akberdina, E. A., et al. (2019). Germline-restricted Chromosome (GRC) is Widespread Among Songbirds. Proc. Natl. Acad. Sci. U S A. 116, 11845–11850. doi:10.1073/pnas.1817373116
Uhl, C. H., and Moran, R. (1973). The Chromosomes of Pachyphytum (Crassulaceae). Am. J. Bot. 60, 648–656. doi:10.1002/j.1537-2197.1973.tb05969.x
Valente, G. T., Conte, M. A., Fantinatti, B. E. A., Cabral-de-Mello, D. C., Carvalho, R. F., Vicari, M. R., et al. (2014). Origin and Evolution of B Chromosomes in the Cichlid Fish Astatotilapia latifasciata Based on Integrated Genomic Analyses. Mol. Biol. Evol. 31, 2061–2072. doi:10.1093/molbev/msu148
van Dam, P., Fokkens, L., Ayukawa, Y., van der Gragt, M., ter Horst, A., Brankovics, B., et al. (2017). A mobile Pathogenicity Chromosome in Fusarium oxysporum for Infection of Multiple Cucurbit Species. Sci. Rep. 7, 9042. doi:10.1038/s41598-017-07995-y
Vanheule, A., Audenaert, K., Warris, S., van de Geest, H., Schijlen, E., Höfte, M., et al. (2016). Living Apart Together: Crosstalk between the Core and Supernumerary Genomes in a Fungal Plant Pathogen. BMC Genomics 17, 670–718. doi:10.1186/s12864-016-2941-6
Ventura, K., O’Brien, P. C. M., do Nascimento Moreira, C., Yonenaga-Yassuda, Y., and Ferguson-Smith, M. A. (2015). On the Origin and Evolution of the Extant System of B Chromosomes in Oryzomyini Radiation (Rodentia, Sigmodontinae). PLoS ONE 10, e0136663. doi:10.1371/journal.pone.0136663
Viseras, E., Camacho, J. P. M., Cano, M. I., and Santos, J. L. (1990). Relationship between Mitotic Instability and Accumulation of B Chromosomes in Males and Females of Locusta migratoria. Genome 33 23–29. doi:10.1139/g90-005
Volobuev, V. T., and Timina, N. Iu. (1980). Unusually High Number of B-Chromosomes and Mosaicism Among Them in the Asiatic forest Mouse Apodemus peninsulae (Rodentia, Muridae). Tsitol Genet. 14, 43–45.
Wang, J., and Davis, R. E. (2014). Programmed DNA Elimination in Multicellular Organisms. Curr. Opin. Genet. Develop. 27, 26–34. doi:10.1016/j.gde.2014.03.012
Werren, J. H., and Beukeboom, L. W. (1993). Population Genetics of a Parasitic Chromosome: Theoretical Analysis of PSR in Subdivided Populations. Am. Naturalist 142, 224–241. doi:10.1086/285536
Werren, J. H., Nur, U., and Eickbush, D. (1987). An Extrachromosomal Factor Causing Loss of Paternal Chromosomes. Nature 327, 75–76. doi:10.1038/327075a0
Werren, J. H., and Stouthamer, R. (2003). PSR (Paternal Sex Ratio) Chromosomes: The Ultimate Selfish Genetic Elements. Genetica 117, 85–101. doi:10.1023/a:1022368700752
Werren, J. H. (1991). The Paternal-Sex-Ratio Chromosome of Nasonia. Am. Naturalist 137, 392–402. doi:10.1086/285172
Williams, A. H., Sharma, M., Thatcher, L. F., Azam, S., Hane, J. K., Sperschneider, J., et al. (2016). Comparative Genomics and Prediction of Conditionally Dispensable Sequences in Legume-Infecting Fusarium oxysporum formae speciales Facilitates Identification of Candidate Effectors. BMC Genomics 17, 191. doi:10.1186/s12864-016-2486-8
Williams, P. (1970). Genetical Effects of B-Chromosomes in Lolium. [dissertation]. Cardiff: University of Wales.
Wilson, E. B. (1907). The Supernumerary Chromosomes of Hemiptera. Sci. New Ser. 26, 870–871. doi:10.1126/science.26.660.258-a
Wolf, K. W., Mertl, H. G. n., and Traut, W. (1991). Structure, Mitotic and Meiotic Behaviour, and Stability of Centromere-like Elements Devoid of Chromosome Arms in the Fly Megaselia scalaris (Phoridae). Chromosoma 101, 99–108. doi:10.1007/BF00357059
Yang, H., Yu, H., and Ma, L.-J. (2020). Accessory Chromosomes in Fusarium oxysporum. Phytopathology 110, 1488–1496. doi:10.1094/phyto-03-20-0069-ia
Yoshida, K., Terai, Y., Mizoiri, S., Aibara, M., Nishihara, H., Watanabe, M., et al. (2011). B Chromosomes Have a Functional Effect on Female Sex Determination in Lake Victoria Cichlid Fishes. Plos Genet. 7, e1002203. doi:10.1371/journal.pgen.1002203
Keywords: evolution, cytogenetics, supernumerary chromosomes, meiotic drive, cellular domestication
Citation: Johnson Pokorná M and Reifová R (2021) Evolution of B Chromosomes: From Dispensable Parasitic Chromosomes to Essential Genomic Players. Front. Genet. 12:727570. doi: 10.3389/fgene.2021.727570
Received: 18 June 2021; Accepted: 25 October 2021;
Published: 09 December 2021.
Edited by:
Ricardo Utsunomia, Federal Rural University of Rio de Janeiro, BrazilReviewed by:
Andreas Houben, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), GermanyStacey Hanlon, University of Connecticut, United States
Copyright © 2021 Johnson Pokorná and Reifová. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Martina Johnson Pokorná, bWFydGluYS5wb2tvcm5hQG5hdHVyLmN1bmkuY3o=; Radka Reifová, cmFka2EucmVpZm92YUBuYXR1ci5jdW5pLmN6