AUTHOR=Ngo-Bitoungui Valentina J. , Belinga Suzanne , Mnika Khuthala , Masekoameng Tshepiso , Nembaware Victoria , Essomba René G. , Ngo-Sack Francoise , Awandare Gordon , Mazandu Gaston K. , Wonkam Ambroise 

TITLE=Investigations of Kidney Dysfunction-Related Gene Variants in Sickle Cell Disease Patients in Cameroon (Sub-Saharan Africa)

JOURNAL=Frontiers in Genetics

VOLUME=12

YEAR=2021

URL=https://www.frontiersin.org/journals/genetics/articles/10.3389/fgene.2021.595702

DOI=10.3389/fgene.2021.595702

ISSN=1664-8021

ABSTRACT=<sec><title>Background</title><p>Renal dysfunctions are associated with increased morbidity and mortality in sickle cell disease (SCD). Early detection and subsequent management of SCD patients at risk for renal failure and dysfunctions are essential, however, predictors that can identify patients at risk of developing renal dysfunction are not fully understood.</p></sec><sec><title>Methods</title><p>In this study, we have investigated the association of 31 known kidney dysfunctions-related variants detected in African Americans from multi-ethnic genome wide studies (GWAS) meta-analysis, to kidney-dysfunctions in a group of 413 Cameroonian patients with SCD. Systems level bioinformatics analyses were performed, employing protein-protein interaction networks to further interrogate the putative associations.</p></sec><sec><title>Results</title><p>Up to 61% of these patients had micro-albuminuria, 2.4% proteinuria, 71% glomerular hyperfiltration, and 5.9% had renal failure. Six variants are significantly associated with the two quantifiable phenotypes of kidney dysfunction (eGFR and crude-albuminuria): <italic>A1CF-rs10994860</italic> (<italic>P</italic> = 0.02020), <italic>SYPL2</italic>-<italic>rs12136063</italic> (<italic>P</italic> = 0.04208), and <italic>APOL1 (G1)-rs73885319</italic> (<italic>P</italic> = 0.04610) are associated with eGFR; and <italic>WNT7A-rs6795744</italic> (<italic>P</italic> = 0.03730), <italic>TMEM60-rs6465825</italic> (<italic>P</italic> = 0.02340), and <italic>APOL1 (G2)-rs71785313</italic> (<italic>P</italic> = 0.03803) observed to be protective against micro-albuminuria. We identified a protein-protein interaction sub-network containing three of these gene variants: <italic>APOL1, SYPL2</italic>, and <italic>WNT7A</italic>, connected to the Nuclear factor NF-kappa-B p105 subunit (NFKB1), revealed to be essential and might indirectly influence extreme phenotypes. Interestingly, clinical variables, including body mass index (BMI), systolic blood pressure, vaso-occlusive crisis (VOC), and haemoglobin (Hb), explain better the kidney phenotypic variations in this SCD population.</p></sec><sec><title>Conclusion</title><p>This study highlights a strong contribution of haematological indices (Hb level), anthropometric variables (BMI, blood pressure), and clinical events (i.e., vaso-occlusive crisis) to kidney dysfunctions in SCD, rather than known genetic factors. Only 6/31 characterised gene-variants are associated with kidney dysfunction phenotypes in SCD samples from Cameroon. The data reveal and emphasise the urgent need to extend GWAS studies in populations of African ancestries living in Africa, and particularly for kidney dysfunctions in SCD.</p></sec>