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METHODS article

Front. For. Glob. Change
Sec. Forest Growth
Volume 7 - 2024 | doi: 10.3389/ffgc.2024.1425492
This article is part of the Research Topic Understanding Patterns and Mechanisms of Forest Canopy Diversity and Ecosystem Functions in a Changing World - Volume II View all 3 articles

Unveiling the above-ground eukaryotic diversity supported by individual large old trees : the "Life on Trees" integrative protocol

Provisionally accepted
Maurice Leponce Maurice Leponce 1,2*Yves Basset Yves Basset 3Ángela Aristizábal-Botero Ángela Aristizábal-Botero 1Noui Baïben Noui Baïben 4Jérôme Barbut Jérôme Barbut 5Bart Buyck Bart Buyck 5Philip Butterill Philip Butterill 6Kim Calders Kim Calders 7Glenda Cárdenas Glenda Cárdenas 8Jean-François Carrias Jean-François Carrias 9Damien Catchpole Damien Catchpole 10Barbara D'hont Barbara D'hont 7Jacques Delabie Jacques Delabie 11Jochen Drescher Jochen Drescher 12Damien Ertz Damien Ertz 13,14André Heughebaert André Heughebaert 15Valérie Hofstetter Valérie Hofstetter 16Céline Leroy Céline Leroy 17,18Frédéric Melki Frédéric Melki 19Johan Michaux Johan Michaux 20Jhon C. Neita-Moreno Jhon C. Neita-Moreno 21Eddy Poirier Eddy Poirier 22Rodolphe Rougerie Rodolphe Rougerie 5Germinal ROUHAN Germinal ROUHAN 5Vincent Rufray Vincent Rufray 23Stefan Scheu Stefan Scheu 12,24Jürgen Schmidl Jürgen Schmidl 25Alain Vanderpoorten Alain Vanderpoorten 26Claire Villemant Claire Villemant 5Nabil Youdjou Nabil Youdjou 1Olivier Pascal Olivier Pascal 19
  • 1 Royal Belgian Institute of Natural Sciences, Brussels, Belgium
  • 2 Université libre de Bruxelles, Brussels, Belgium
  • 3 Smithsonian Tropical Research Institute (Panama), Panama City, Panama
  • 4 Independent researcher, Lyon, France
  • 5 Muséum National d'Histoire Naturelle, Paris, France
  • 6 Biology Centre, Academy of Sciences of the Czech Republic (ASCR), Prague, Czechia
  • 7 Department of Environment, Faculty of Bioscience Engineering, University of Ghent, Ghent, East Flanders, Belgium
  • 8 Biodiversity Unit, University of Turku, Turku, Finland
  • 9 UMR6023 Laboratoire Microorganismes Génome Et Environnement (LMGE), Aubière, Auvergne, France
  • 10 Independent researcher, Lima, Peru
  • 11 Cocoa Research Center – CEPEC/CEPLAC, Ilhéus, Bahia, Brazil
  • 12 Johann Friedrich Blumenbach Institute of Zoology and Anthropology, University of Göttingen, Goettingen, Lower Saxony, Germany
  • 13 Botanic Garden Meise, Brussels, Belgium
  • 14 French Community of Belgium, Brussels, Belgium
  • 15 Belgian Biodiversity Platform, Brussels, Brussels, Belgium
  • 16 Independent researcher, Nyon, Switzerland
  • 17 The AMAP laboratory, Montpellier, Languedoc-Roussillon, France
  • 18 Université des Antilles et de la Guyane, Pointe-à-Pitre, France
  • 19 Fonds de Dotation Biotope Pour La Nature, Remire-Montjoly, French Guiana
  • 20 Institute of Botany, University of Liege, Liege, Liège, Belgium
  • 21 Alexander von Humboldt Biological Resources Research Institute, Bogotá, Colombia
  • 22 Independent researcher, Cayenne, French Guiana
  • 23 Fondation Biotope, Remire-Montjoly, French Guiana
  • 24 Centre of Biodiversity and Sustainable Land Use, Faculty of Agricultural Sciences, University of Göttingen, Göttingen, Lower Saxony, Germany
  • 25 University of Erlangen Nuremberg, Erlangen, Germany
  • 26 Department of Biology, Ecology and Evolution, Faculty of Sciences, University of Liege, Liege, Liège, Belgium

The final, formatted version of the article will be published soon.

    Large tropical trees are rightly perceived as supporting a plethora of organisms. However, baseline data about the variety of taxa coexisting on single large tropical trees are lacking and prevent a full understanding of both the magnitude of biodiversity and the complexity of interactions among organisms in tropical rainforests. The two main aims of the research program "Life on Trees" (LOT) are (1) to establish baseline knowledge on the number of eukaryote species supported/hosted by the above-ground part of a single tropical tree and (2) to understand how these communities of organisms are assembled and distributed on or inside the tree. To achieve the first goal, we integrated a set of 36 methods for comprehensively sampling eukaryotes (plants, fungi, animals, protists) present on a tropical tree. The resulting LOT protocol was conceived and implemented during projects in the Andean Amazon region and is proposed here as a guideline for future projects of a similar nature. To address the second objective, we evaluated the microclimatic differences between tree zones and tested state-of-the-art terrestrial laser scanning (TLS) and positioning technologies incorporating satellite and fixed base station signals (dGNSS). A marked variation in temperature and relative humidity was detected along a 6-zones Johansson scheme, a tree structure subdivision system commonly used to study the stratification of epiphytic plants. Samples were collected from these six zones, including three along the trunk and three in the canopy. To better understand how different tree components (e.g., bark, leaves, fruits, flowers, dead wood) contribute to overall tree biodiversity, we categorized observations into communities based on Johansson zones and microhabitats. TLS was an essential aid in understanding the complex tree architecture. By contrast, the accuracy of positioning samples in the tree with dGNSS was low. Comprehensively sampling the biota of individual trees offers an alternative to assessing the biodiversity of fewer groups of organisms at the forest scale. Large old tropical trees provide a wealth of microhabitats that encompass a wide range of ecological conditions, thereby capturing a broad spectrum of biodiversity.

    Keywords: Canopy, Eukaryotes, Johansson zones, Microclimate, Amazon-Andes, terrestrial laser scanning, Taxonomy, biodiversity magnitude

    Received: 29 Apr 2024; Accepted: 22 Jul 2024.

    Copyright: © 2024 Leponce, Basset, Aristizábal-Botero, Baïben, Barbut, Buyck, Butterill, Calders, Cárdenas, Carrias, Catchpole, D'hont, Delabie, Drescher, Ertz, Heughebaert, Hofstetter, Leroy, Melki, Michaux, Neita-Moreno, Poirier, Rougerie, ROUHAN, Rufray, Scheu, Schmidl, Vanderpoorten, Villemant, Youdjou and Pascal. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

    * Correspondence: Maurice Leponce, Royal Belgian Institute of Natural Sciences, Brussels, Belgium

    Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.