AUTHOR=Wilson Kristen L. , Wong Melisa C. , Devred Emmanuel TITLE=Branching Algorithm to Identify Bottom Habitat in the Optically Complex Coastal Waters of Atlantic Canada Using Sentinel-2 Satellite Imagery JOURNAL=Frontiers in Environmental Science VOLUME=8 YEAR=2020 URL=https://www.frontiersin.org/journals/environmental-science/articles/10.3389/fenvs.2020.579856 DOI=10.3389/fenvs.2020.579856 ISSN=2296-665X ABSTRACT=

Sentinel-2 satellite imagery has been successfully used to map submerged seagrasses in clear waters, and surface-canopy forming seaweed habitats in a range of water types. We examined the ability to use Sentinel-2 remote sensing reflectance to classify fully submerged seagrass and seaweed habitats in optically complex, temperate waters within a high priority management region in Atlantic Canada. To do so, we determined the “best” Sentinel-2 image available between 2015 and 2019 based on tidal height, absence of sun glint and clouds, and water transparency. Using the full Sentinel-2 tile, we atmospherically corrected the image using ACOLITE’s dark spectrum fitting method. Our classification goal was a two-class prediction of vegetation presence and absence. Using information obtained from drop-camera surveys, the image was first partially classified using simple band thresholds based on the normalized difference vegetation index (NDVI), red/green ratio and the blue band. A random forest model was built to classify the remaining areas to a maximum depth of 10 m, the maximum depth at which field surveys were performed. The resulting habitat map had an overall accuracy of 79% and ∼231 km2 of vegetated habitat were predicted to occur (total area 345.15 km2). As expected, the classification performed best in regions dominated by bright sandy bare substrate, and dense dark vegetated beds. The classification performed less well in regions dominated by dark bare muddy substrate, whose spectra were similar to vegetated habitat, in pixels where vegetation density was low and mixed with other substrates, and in regions impacted by freshwater input. The maximum depth that bottom habitat was detectable also varied across the image. Leveraging the full capacity of the freely available Sentinel-2 satellite series with its high spatial resolution and resampling frequency, provides a new opportunity to generate large scale vegetation habitat maps, and examine how vegetation extent changes over time in Atlantic Canada, providing essential data layers to inform monitoring and management of macrophyte dominated habitats and the resulting ecosystem functions and services.