Skip to main content

REVIEW article

Front. Endocrinol., 04 May 2022
Sec. Diabetes: Molecular Mechanisms
This article is part of the Research Topic Pharmacogenomics and Pharmacomicrobiomics in Type 2 Diabetes Mellitus (T2DM) View all 10 articles

Pharmacomicrobiomics in Western Medicine and Traditional Chinese Medicine in Type 2 Diabetes

  • 1Department of Medicine and Therapeutics, The Chinese University of Hong Kong, Prince of Wales Hospital, Hong Kong, Hong Kong SAR, China
  • 2Li Ka Shing Institute of Health Sciences, The Chinese University of Hong Kong, Prince of Wales Hospital, Hong Kong, Hong Kong SAR, China
  • 3Hong Kong Institute of Diabetes and Obesity, The Chinese University of Hong Kong, Prince of Wales Hospital, Hong Kong, Hong Kong SAR, China
  • 4Phase 1 Clinical Trial Centre, The Chinese University of Hong Kong, Prince of Wales Hospital, Hong Kong, Hong Kong SAR, China

Pharmacomicrobiomics refers to the interactions between foreign compounds and the gut microbiome resulting in heterogeneous efficacy, side effects, and toxicity of the compound concerned. Glucose lowering drugs reduce blood glucose by modulating insulin secretion and its actions as well as redistributing energy disposal. Apart from genetic, ecological, and lifestyle factors, maintaining an equilibrium of the whole gut microbiome has been shown to improve human health. Microbial fingerprinting using faecal samples indicated an ‘invisible phenotype’ due to different compositions of microbiota which might orchestrate the interactions between patients’ phenotypes and their responses to glucose-lowering drugs. In this article, we summarize the current evidence on differences in composition of gut microbiota between individuals with type 2 diabetes (T2D) and healthy individuals, the disruption of the balance of beneficial and pathogenic microbiota was shown in patients with T2D and how Western Medicine (WM) and Traditional Chinese Medicine (TCM) might re-shape the gut microbiota with benefits to the host immunity and metabolic health. We particularly highlighted the effects of both WM and TCM increase the relative abundance of health promoting bacteria, such as, Akkermansia muciniphila, Blautia, and Bifidobacterium adolescentis, and which have been implicated in type 2 diabetes (T2D). Several lines of evidence suggested that TCM might complement the efficacy of WM through alteration of microbiota which warrants further investigation in our pursuit of prevention and control of T2D.

Introduction

Type 2 diabetes (T2D) and its complications constitute a worldwide public health challenge. In 2020, it was estimated that 537 million people had diabetes with the majority residing in low- and middle-income countries (1). Over 95% of affected people have T2D which is associated with an increased risk of premature death and multiple morbidities. Type 2 diabetes is a complex disease due to multiple risk factors where delayed diagnosis and intervention can lead to widespread micro and macrovascular complications. The distribution of gut microbiota in is disrupted in patients with type 2 diabetes and cardiovascular disease. Butyrate producing organisms such as Bifidobacterium, Bacteroides, Faecalibacterium, and Akkermansia were negatively associated with T2D, while Ruminococcus, Fusobacterium, and Blautia were more abundant in T2D patients. Gut microbiota can also influence other cardiometabolic risk factors, such as hypercholesteoleremia by modulating metabolite production of bile acids, coprostanol and short chain fatty acids (SCFAs) (2). The balance of beneficial and pathogenic bacteria may linked to different diseases (3). Apart from personal suffering, these complications are associated with enormous healthcare costs and loss of societal productivity, calling for more accurate diagnosis and efficient prevention and control strategies (1).

Rapid urbanization is associated with multidimensional changes in our ecosystem including but is not limited to mechanization, food technology, physical space, cultures, jobs, and leisure which greatly influence our lifestyles notably diet and exercise (4). These changes in the macroenvironment can affect the host internal milieu which can be further influenced by the microorganisms in their gut, referred to as microbiota (2). With the advent of sequencing technology, the collective genomes of these microbiota (microbiome) can be defined and categorized. In recent years, many studies have reported associations of the development of T2D with changes in the gut microbiome (5, 6). Possible mechanisms include insulin resistance, changes in pH and bowel permeability (7), endotoxemia (8) as well as changes in the metabolism of bile acids (9) and short-chain fatty acids (SCFA) (10, 11).

In support of the possible causative roles of microbiota in the pathogenesis of T2D, there are also reports suggesting that some Western Medicine (WM) and Traditional Chinese medicine (TCM) mediated their effects through changes in the microbiome (12). In this review, we summarize differences in the composition of gut microbiota between healthy individuals and patients with T2D as well as the effects of different WM and TCM on gut microbiota, which act in concert with lifestyle factors to orchestrate the diversity of the whole gut microbiome and influence metabolic health.

Differences of Gut Microbiota in Healthy Individuals and Patients With T2D

Microbial fingerprinting refers to the use of fecal samples to identify the unique pattern of the microbiome, referred to as ‘dysbiosis’, associated with a disease phenotype. In this section, we reviewed published data on the pattern of microbiota in T2D and explored the possible effects of different medications in altering microbiota homeostasis.

In a recent systematic review, patients with T2D had a higher abundance of Lactobacilli and a lower abundance of Bifidobacteria than healthy individuals (5). In this analysis which included 13 case-control studies including 575 patients with T2D and 840 healthy controls, the authors reported that these T2D-associated microbiome might be further influenced by the effect of different medications. In another study involving 11 newly diagnosed patients with T2D, researchers compared their microbiota with that of 17 individuals with prediabetes and 39 patients with established T2D. Compared to healthy individuals, newly diagnosed T2D had a lower abundance of Akkermansia, Blautia, Ruminococcus (13),Clostridium leptum, and Clostridium coccoide (14), but these changes were restored in patients with T2D on antidiabetic treatment (15). C. leptum and C. coccoides are butyrate-producing bacteria and are inversely related to glucose and homeostatic model assessment (14).

Several lines of evidence indicated that intestinal microbial overgrowth was found in patients with newly diagnosed T2D compared with individuals with normal glucose tolerance (NGT). While individuals with impaired glucose tolerance (IGT) and T2D had similar patterns of dysbiosis, this was not found in those with impaired fasting glucose (IFG) (16). In a 4-year study involving individuals with prediabetes, researchers reported plasma glucose was negatively associated with Odoribacter, Oscillibacter, and Pseudoflavonifracter (15).

Clostridium leptum and C. coccoides were microbiota that could influence human health by altering intestinal peristalsis, promoting synthesis of vitamins, promoting excretion of harmful substances, and protecting the gut from an invasion of pathogens. In treatment-naïve patients with T2D, there was relative depletion of C. coccoides and C. leptum considered to be health-promoting microbiota. In these patients, the microbiota was also dominated by harmful microbiota, such as Escherichia/Shigella (17). Other species implicated in T2D included Akkermansia, Blautia, Clostridium spp., and Ruminococcus. Of note, low abundance of Akkermansia muciniphila had been associated with obesity and aging while its administration had been shown to increase the intestinal levels of endocannabinoids with reduced inflammation (18). Recently, some species in the genera Clostridium and Ruminococcus had been reclassified as Blautia, the latter being a newly discovered anaerobic probiotic which was negatively correlated with metabolic diseases such as T2D, obesity, and fatty liver (19). All these studies found a decrease in the number of butyrate-producing bacteria, such as Akkermansia, Blautia, and Bifidobacteria, and an increase in conditional pathogens, Escherichia/Shigella.

Effects of WM on the Gut Microbiome in Type 2 Diabetes

Table 1 summarizes the effects of WM on the composition of the microbiota. Biguanide (e.g., metformin) is the most popular oral glucose-lowering drug often used as first-line therapy in patients with T2D. Metformin has pluripotent effects which improve energy metabolism and reduce inflammation. By inhibiting the mitochondrial complex I as a key component of the electron transport system, metformin activates AMPK (adenosine 5′- monophosphate-activated protein kinase) resulting in reduced anabolism and increased catabolism (27). Metformin also reduces hepatic glucose production and absorption of glucose from the intestine. Additionally, the gut microbiota has been linked to the glucose-lowering efficacy and tolerance with metformin.

TABLE 1
www.frontiersin.org

Table 1 Summary of the effects of western medicine on the composition of the gut microbiome in T2D patients.

In an animal study, 28 high-fat-fed mice were randomized to the control and metformin group equally, metformin group increased the abundance of genus Bacteroides, Akkermansia, Parabacteroides, Christensenella, Clostridales, and decreased the abundance of genus Muribaculum, Lachnoclostridium, Coprococcus, Dorea, Papillibacter, Oscillospira, Ruminococcus, and Desulfovibrio in 12 week treatment (28). In other animal studies, metformin has been shown to constantly promote of the abundance of Akkermansia at a dose ranging from 75 to 300mg/kg/d given for 4 days to 14 weeks in ten controlled studies (2938). In a 4-month double-blind, placebo-controlled study involving 40 patients with T2D, who were treated with metformin showed no differences in body weight, body fat, and fasting plasma insulin but reduced glycated hemoglobin (HbA1c) and fasting plasma glucose. Treatment with metformin also increased Akkermansia muciniphila, Bifidobacterium adolescentis, Lactobacillus fermentium, Peptoniphilus sp. Ruminococcus sp. Cronobacter turicensis, Enterobacter lignolyticus, Citrobacter koseri, Yersinia enterocolitica subsp., Klebsiella pneumonia, Enterobacter asburiae, Enterobacter cloacae subsp, and decreased Intestinibacter bartlettii, Clostridium beijerinckii, Clostridium sp. Clostridium perfringens, Clostridium botulinum, and Clostridium butyricum. Notably, Bifidobacterium adolescentis was the only probiotic that exhibited a dose-related response to metformin in the gut microbiome. In animal and human studies, metformin increased the abundance of Akkermansia muciniphila (39) but inconsistent in other health promoting microbiota, such as Blautia (40), Prevotella (41), and Roseburia (38). The results in humans are different from the results of animal studies because of differences in intestinal microbiome between humans and animals (42) affecting by eating habit, physical activities, ethnic origins, course of disease, comorbidities, and multiple medications.

In another two clinical trials, metformin also increased Akkermansia muciniphila and SCFA-producing microbes (10) including Butyrivibrio, Bifidobacterium bifidum, Megasphaera, and Prevotella (22). These microbes utilized multiple dietary substrates to produce an array of metabolites. The abundance of Bifidobacterium species can activate multiple genes involved in carbohydrate metabolism (43) and Prevotella species contribute to starch degradation (22). In another study involving patients with newly diagnosed T2D, 3-day treatment with metformin decreased the genus Bacteroides with increased bile acid glycoursodeoxycholic acid (GUDCA) accompanied by reduced hyperglycemia. In mice, colonization of B. fragilis abrogated the glucose-lowering and GUDCA increasing effects of metformin suggesting that this microbe might play a mediating role in these metabolic effects of metformin (11).

Acarbose is an alpha-glucosidase inhibitor. It is a highly popular glucose-lowering drug in China (44) and many Asian countries (45). This WM is a complex molecule that inhibits the conversion of disaccharides to monosaccharides and thus converts carbohydrates into a fiber-like molecule. This leads to an increased amount of indigestible carbohydrates in the lower part of the intestine available for fermentation by microbiota. In an animal study, compared to the control and a low dose acarbose (25 ppm), a high dose of acarbose (400 ppm) promoted the abundance of Bacteroidaceae and Bifidobacteriaceae and decreased in the abundance of Bacteroidales S24-7 and species Akkermansia muciniphila under the controlled diet (46). However, in another animal study when compared to placebo, acarbose displayed a higher abundance of Ruminococcus 2 and Lactobacillus and decrease the species Akkermansia muciniphila (47). In a human study, after treatment with acarbose, Lactobacillus and Bifidobacterium species thrived with depletion of the original gut microbiota including Bacteroides, Alistipes, and Clostridium (23). In a clinical study, acarbose was found to increase the abundance of Bifidobacterium and Lactobacillus, which correlated inversely with changes in HbA1c and body weight. At the genus level, acarbose decreased the abundance of Bacteroides and at a species level, Bacteroides plebeius, Bacteroides dorei/vulgatus, and Clostridium bolteae. In a randomized trial, acarbose treatment increased the abundance of Bifidobacterium longum and Enterococcus faecalis in patients with T2D. However, these results might have been confounded by its co-administration with metformin and other glucose-lowering drugs (24) which could also alter the diversity of microbiota. In people with prediabetes (48), compared to placebo, treatment with acarbose increased abundance of Lactobacillus and Dialister and reduced abundance of Butyricicoccus, Phascolarctobacterium, and Ruminococcus. However, the study did not differentiate between IFG and IGT. Such differentiation is important given that the microbiome in the IGT group is more akin to that in individuals with T2D (16).

Dipeptidyl peptidase (DPP-4) inhibitors include sitagliptin, saxagliptin, linagliptin, and alogliptin. This drug class prevents the enzymatic degradation of glucagon-like peptide 1 (GLP-1) and glucagon-like peptide 2 (GLP-2). Glucagon-like peptide (GLP) and glucose-dependent insulinotropic polypeptide (GIP) are incretins or peptides secreted by the enterocytes in the gut. Incretins are natural hormones that suppress glucagon and hepatic glucose production whilst augmenting insulin secretion during meal time resulting in reduced fasting and post-prandial blood glucose. In animal studies, DPP4-inhibitors reduced the abundance and diversity of gut microbiota accompanied by reduced body weight (49). In one animal study, DPP-4 inhibitor vildagliptin decreased Oscillibacter spp. and increased Lactobacillus spp (50). In mice treated with sitagliptin; one-third of the total species were occupied by Ruminococcaceae. These results suggested that sitagliptin might alter the gut microbiome to promote fermentation of complex plant-based carbohydrates and influence host metabolism (51). Other animal studies also showed that DPP-4 inhibitor increased the abundance of Roseburia and decreased Blautia with no effect on Clostridium (52).

In animal studies, GLP-1 receptor agonists reduced hyperglycaemia which was associated with a reduced abundance of Romboutsia and Ruminiclostridium as well as an increased abundance of Prevotella was associated with reduction of body weight (53). Neither GLP-1 receptor agonists nor DPP-4 inhibitors induced diversity of microbiome when used as an add-on therapy to metformin or sulphonylureas (SU) in the human study (54). Since metformin might have reshaped the microbiota, there might be little room for further changes by GLP-1 and DPP-4 inhibitors. However, in another clinical study involving 40 patients with T2D who were switched from metformin monotherapy to daily subcutaneous liraglutide injection for 4 months, there was an increase in the abundance of Collinsella, Akkermansia, and Clostridium genus (25).

Sodium–glucose-transporter-2 (SGLT2) inhibitors increase urinary glucose and sodium excretion resulting in a reduction in blood glucose, plasma insulin, blood pressure, and body weight (55). In the animal study, dapagliflozin, a SGLT2 inhibitor reduced the Firmicutes to Bacteroidetes ratio and increased the abundance of Akkermansia muciniphila (39). However, in a subsequent double-blind, randomized clinical trial comparing dapagliflozin and gliclazide, the latter being a sulphonylureas, in patients with T2D (26), neither drug induced any changes in the composition of gut microbiota. Sulphonylureas reduce blood glucose by directly stimulating insulin secretion. In a clinical trial, gliclazide, a sulphonylureas, did not change the relative abundances of microbiota (23). In a 3-month observational study, another sulphonylureas, glipizide, also did not cause changes in the microbiota (23). In these clinical studies, the majority of patients were treated with metformin which was well known to alter the relative abundance of microbiota. Thus, the addition of dapagliflozin and gliclazide as add-on medications might not induce further significant effects. Besides, given their mechanisms of action which are largely independent of the gut, the neutral effects of SGLT2 inhibitors and sulphonylureas are not unexpected. However, most of these results in different WMs were not consistent due to the complex composition of the microbiota, the large variation between individuals in different cultures, and the differences in experimental design affecting by the effect of multi-therapy in treatment of WMs in human gut microbiota. Taken together, the conduct of well-designed, double-blind, placebo-controlled studies preferably in newly diagnosed, treatment-naïve patients with T2D and prediabetes are needed to clarify the mediating effects of microbiota on WM in influencing metabolic health.

Effects of TCM on the Gut Microbiome in T2D

Due to potential side effects of WM, notably hypoglycemia, as well as for reasons such as cultures, traditions, and social norms, TCM has always been an integral part of clinical practices and therapeutics in East Asian countries. Similar to metformin and acarbose, there is emerging evidence suggesting that TCM might alter the diversity of the gut microbiome with alteration of bile acid metabolism and increased production of SCFAs which contribute to the improvement of glucose metabolism. Herein, bile acids are cholesterol-derived metabolites that promote the intestinal absorption and transport of dietary lipids and play a key role in energy metabolism (56). Table 2 summarise the effects of TCM on microbiota and metabolic effects.

TABLE 2
www.frontiersin.org

Table 2 Summary of the effects of traditional Chinese medicine on the composition of the gut microbiome in T2D patients.

Berberine is the main ingredient of TCM used for treating T2D. It is a natural plant alkaloid extracted from Berberis aristata and Coptis chinensis (Huanglian) (60). Berberine has reduced solubility in the gut and can permeate the gut wall. In a 12-week randomized clinical trial comparing berberine and placebo, berberine altered the gut microbiome composition with a 2-fold increase in Bacteroides spp. and Proteobacteria (61), a pattern similar to that due to metformin (11, 21). Berberine also induced cell death in harmful gut bacteria and enhanced the composition of beneficial bacteria including Bifidobacterium adolescentis and Lactobacillus acidophilus (61). Both berberine and metformin upregulated the AMPK pathway which reduced anabolism and promoted catabolism including glycolysis resulting in weight loss and reduced insulin resistance (62). Despite these beneficial effects, berberine depleted the SCFA- producing microbes including Roseburia spp., Ruminococcus bromii, Faecalibacterium prausnitzii, and Bifidobacterium spp. These two species (Roseburia spp. and Bifidobacterium spp.) are biomarkers indicative of a healthy gut microenvironment. Other researchers reported an inverse association of Ruminococcus bromii with bile acid metabolism with reduced formation of secondary bile acids by microbiota (57). In the intestine, bile acids undergo multistep biotransformation catalyzed by enzyme activities in gut bacteria, and the increase of Ruminococcus bromii suppresses bacterial 7α-dehydroxylase and leads to the reduction of secondary bile acids (63, 64). Although berberine lack some of the favourable effects of metformin on microbiota, it possessed beneficial effects exhibited by acarbose treatment.

Gegen Qinlian Decoction (GQD) is another popular TCM for the treatment of T2D. It comprises seven herbs including Rhizoma coptidis, Radix scutellariae, Radix puerariae, Rhizoma anemarrhenae, Radix panacis uinquefolia, Radix paeoniae rubra and Rhizoma zingiberis (65). The effects of GQD on microbiota were similar to that of berberine. GQD treatment altered the overall gut microbiota structure and enriched many butyrate-producing bacteria, including Faecalibacterium, Bifidobacterium, and Gemmiger. These changes in the gut milieu had been shown to attenuate intestinal inflammation and improve metabolic health including glucose metabolism. In the animal study, both berberine and GOD increased the plasma levels of SCFA with reduced fasting plasma insulin level (58). In another study, treatment with GQD enriched the abundance of Faecalibacterium prausnitzii which was negatively correlated with fasting and 2-hour postprandial blood glucose and HbA1c as well as positively with insulin response as indicated by the HOMA-β index (66). One of the ingredients in GQD, Radix scutellariae, is commonly co-investigated with metformin (67). TNF-α was significantly reduced and the abundance of Lactobacillus and Akkermansia remarkably increased after metformin treatment with Scutellaria baicalensis when compared to metformin treatment with placebo.

JinQi Jiangtang (JQJT) is a formula used for the prevention of T2D. It contains Rhizoma coptidis, Astragali Radix and Lonicerae Japnicae Flos. In the animal study, treatment with JQJT tablets increased the abundance of species Akkermansia and reduced that of genus Desulfovibrio. Of note, reduced abundance of Akkermansia spp was correlated with inflammation in people with obesity (68). Other studies had reported that JQJT tablets modulated gut microbiota with increased formation SCFAs. The latter can provide energy and nutrition for the intestinal epithelium with improved gut health (69). There are limited studies on the effects of JQJT on microbiota in patients with T2D. In a 2-year multi-center randomized clinical trial involving 400 Chinese individuals with prediabetes, treatment with JQJT was associated with a lower incidence of diabetes compared to placebo with reduced blood glucose, triglyceride, albuminuria, and insulin resistance although there was no information on microbiota (70).

A modern herbal formula called AMC (no full name provided in the article) had been specifically developed for the treatment of T2D with hyperlipidemia. The herbs used in this formula included Rhizoma Anemarrhenae, Momordica charantia, Coptis chinensis, Aloe vera, and red yeast rice. In a randomized study comparing AMC and metformin in patients with T2D, AMC was similarly efficacious as metformin in reducing blood glucose and lipid levels. Both metformin and AMC enrich the abundance of beneficial bacteria Blautia spp., which correlated with improvements in glucose and lipid homeostasis. However, AMC showed better efficacy than metformin in improving HOMA-IR and plasma triglyceride via an increase of Roseburia, Faecalibacterium, Gemmiger, Coprococcus, and un-Lachnospiraceae (59).

Interaction Between WM and TCM

Current evidence suggested that both WM and TCM orchestrated different effects on the microbiome (Figure 1) to modulate glucose metabolism through different mechanisms. In East Asia with a large number of people with T2D, herbal medicines are frequently used as complementary therapies by patients treated with WM, notably metformin, although co-administration of TCM and WM is lacking in the clinical guideline. Few studies evaluated possible WM-TCM interactions including pharmacokinetics and pharmacodynamics. In recent human study, compared with administration of metformin and placebo, co-administration of metformin and berberine resulted in significant improvements in glycemic control, liver fat content, and body weight (71). In an animal study, compared with administration of metformin alone, co-administration of berberine and metformin resulted in changes in the gut microbiome due to reduced metformin degradation. These changes included an increased abundance of Bacteroides fragilis, Clostridium perfringens, Staphylococcus aureus, Klebsiella pneumoniae, Escherichia coli, and Enterobacter cloacae, which might adversely affect the host immunity. These less desirable changes suggested berberine might attenuate the favourable effects of metformin on microbiota (72). Further investigations are warranted to evaluate the impacts of WM-TCM interactions on microbiota and human health.

FIGURE 1
www.frontiersin.org

Figure 1 The effects of Western Medicine and Traditional Chinese Medicine in shaping the gut microbiota which may contribute to the control and prevention of type 2 diabetes (JQJT, JinQi Jiangtang; GQD, Gegen Qinlian Decoction; AMC, specifically designed herbal formula (no full name provided); GLP-1, Glucagon-like peptide-1.) In this review, summarized evidence suggested that both WM and TCM orchestrated different patterns on the microbiome, upward and downward arrows indicated an increase or decrease of certain microbiota by WM or TCM, and the particular microbiota underlined were possibly highlighted in the treatment of T2D.

Other Factors Affecting Drug-Microbiome Interactions

Host genomes, dietary habits, and physical activities are the most important factors that might confound drug-microbiome interactions. Within the same population, researchers reported considerable inter-individual as well as intra-individual variations in their microbiome patterns such as the ratio of Firmicutes to Bacteroidetes which are the two major phyla in the gut (73). These differences are most likely due to differences in dietary habits, physical activity, and consumption of different drugs such as antibiotics.

Dietary Factors and Physical Activities

Dietary factor is directly interacting with gut microbiota and many research had indicated that different diets orchestrate the pattern of microbiota (7476). Other researchers had reported that habitual dietary consumption caused changes in the composition of gut microbiota which in turn influenced the effects of their drug therapy. In Japanese patients with T2D taking acarbose, high rice intake was associated with the abundance of Faecalibacterium while high intake of potatoes was associated with a low abundance of health-promoting microbiota such as Akkermansia and Subdoligranulum (77). In another human study, compared to 20 obese women before metformin treatment, an increase of Escherichia/Shigella was found after 2 months of low-calorie diet and metformin treatment (78). This results did not suggest in other similar study design of human (22) and animal (79) studies when having metformin alone. These findings lent support to the hypothesis that diet-drug interaction may alter the microbiota to either attenuate or augment the therapeutic efficacy of WM or TCM.

In a human study, 26 subject sedentary lifestyle and prediabetes or T2D were increased exercise for 2 weeks, a decrease in the Clostridium genus was observed (8). In another study, 12-week intense exercise-induced changes in the gut microbiota in subjects with prediabetes with marked improvement in insulin resistance and reduced insulin level. This was accompanied by decreases in Bacteroides xylanisolvens and an increase in the abundance of Streptococcus mitis (80). However, no study investigated the effect of medicine and exercise on the gut microbiota in T2D.

Drug-Gut-Microbiota Cross-Talks and Drug Efficacy

Many oral glucose-lowering drugs might cause gastrointestinal side effects, partly due to fermentation of undigested carbohydrates by microbiota resulting in gas formation with altered transit time and gut permeability. These side effects might be alleviated using prebiotics or probiotics to improve treatment tolerance and glycemic control. Prebiotics and probiotics are microbiota-management tools for improving host health. Prebiotics are a group of nutrients in natural foods that are selectively utilized by host microorganisms conferring a health benefit and probiotics are health-related microbial strains and act as an oral supplement or added into food products (81). In a clinical study involving ten metformin-intolerant patients with T2D, administration of a readily dissolvable powder containing inulin, beta-glucan and polyphenols modulated the microbiome with improved metformin tolerance (82). Inulin and beta-glucan are metabolized in the colon by Bacteroides and Prevotella genera (83) with increased secretion of peptide YY and GLP-1. These changes were accompanied by reduced fasting plasma glucose and frequency of loose stool, a common side effect of metformin.

Since orally administered drugs may shape the gut microbiota, researchers suggested that probiotics might be used as an adjunctive to WM aimed at altering the diversity of microbiota with increasing SCFAs and enhanced glucose management. In a randomized placebo-controlled study, co-administration of probiotics (Lactobacillus spp., Bifidobacterium spp., Streptococcus spp., and Saccharomyces spp.) in 60 subjects with prediabetes or T2D, did not improve glycemic control but increased insulin sensitivity. There was an increase in the relative abundance of Bifidobacterium breve and Akkermansia muciniphila and Clostridium XIVa, albeit short of significance compared with the placebo group (84). Whether administration of prebiotics to augment the health-promoting effects of microbiota might be more effective than direct administration of health-promoting probiotics in improving drug tolerance or metabolic health is a subject that warrants further investigations.

Future Perspectives

Much remains unknown on the effect of glucose-lowering WM and TCM on microbial composition and interaction with host factors. In addition to effects on blood glucose, changes in microbiota may also improve other cardiometabolic risk factors. Modulation of the microbiota be part of a new therapeutic strategy against other diseases, such as non-alcoholic fatty liver disease (85), cardiovascular or even neurodegenerative disorders (86). For example, Akkermanisa spp., which is increased by metformin, was also highly correlated with weight loss (74). There is emerging evidence for a pro-inflammatory dysbiosis in neurodegenerative disorders such as Parkinson’s disease. The decrease in anti-inflammatory genera such as Blautia, Coprococcus, Roseburia, and Fecalibacterium (87), could potentially be reversed by metformin or acarbose. Finally, pharmacomicrobiomics should evaluate interactive effects between WM and TCM in the treatment of diabetes, where either beneficial or harmful drug interactions mediated via microbiota might occur.

Conclusion

Type 2 diabetes is a disorder of energy metabolism due to complex interplays amongst the ecosystem, host, and microbiome. The natural history of obesity, prediabetes and diabetes are associated with inter-individual and intra-individual diversity of microbiota. Diabetes-associated dysbiosis is characterized by a reduction in gram-positive members of the beneficial microbiota such as Blautia, Rumminococcaceae, and gram-negative Akkermanisa species with reduced production of SCFA and dysregulation of bile acid metabolism which can adversely affect metabolic health.

Glucose lowering drugs can alter glucose, lipid, and fat metabolism and modulate inflammatory responses by re-shaping the composition of the microbiome which in turn can affect immune cells directly and indirectly through metabolites such as lipopolysaccharide and SCFAs, alteration of gut permeability, and whole gut transit time. Host-gut microbiota interaction is central in bile acid metabolism and cell signalling and can be modulated by medications. The effects of these changes in gut microbiota might contribute to the diversity in disease phenotypes including hormones and inflammatory cytokines. Both WM (e.g. metformin and acarbose) and TCM (berberine based) have been shown to improve the abundance of beneficial bacteria, such as Blautia spp., Akkermanisa spp., and Faecalibacterium, and reduce the production of secondary bile acids which might contribute towards their metabolic effects including their side effects. Integration of WM and TCM may promote different health-related microbiota and suppress the pathogenic microbiota, such as Desulfovibrio. Given the expanding knowledge in the field of microbiome and the availability of high throughput sequencing, further investigations on the modulating effects of microbiota on the efficacy and side effects of WM and TCM will provide novel insights and open a new avenue for reducing the burden of T2D and non-communicable diseases.

Author Contributions

NC and EC conceived of the presented idea. NC drafted the manuscript and designed the figures. JC and EC devised the main conceptual ideas and proof outline. JC encouraged NC to investigate the Chinese Medicine and supervised the findings of this work. All authors discussed the results and contributed to the final manuscript.

Conflict of Interest

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Publisher’s Note

All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.

References

1. Sun H, Saeedi P, Karuranga S, Pinkepank M, Ogurtsova K, Duncan BB, et al. IDF Diabetes Atlas: Global, Regional and Country-Level Diabetes Prevalence Estimates for 2021 and Projections for 2045. Diabetes Res Clin Pract (2021), 109119.

PubMed Abstract | Google Scholar

2. Gurung M, Li Z, You H, Rodrigues R, Jump DB, Morgun A, et al. Role of Gut Microbiota in Type 2 Diabetes Pathophysiology. EBioMedicine (2020) 51:102590. doi: 10.1016/j.ebiom.2019.11.051

PubMed Abstract | CrossRef Full Text | Google Scholar

3. Vamanu E, Pelinescu D, Sarbu I. Comparative Fingerprinting of the Human Microbiota in Diabetes and Cardiovascular Disease. J Medi Food (2016) 19(12):1188–95. doi: 10.1089/jmf.2016.0085

CrossRef Full Text | Google Scholar

4. Chan JC, Lim L-L, Wareham NJ, Shaw JE, Orchard TJ, Zhang P, et al. The Lancet Commission on Diabetes: Using Data to Transform Diabetes Care and Patient Lives. Lancet (2020) 396(10267):2019–82. doi: 10.1016/S0140-6736(20)32374-6

PubMed Abstract | CrossRef Full Text | Google Scholar

5. Umirah F, Neoh CF, Ramasamy K, Lim SM. Differential Gut Microbiota Composition Between Type 2 Diabetes Mellitus Patients and Healthy Controls: A Systematic Review. Diabetes Res Clin Pract (2021) 173. doi: 10.1016/j.diabres.2021.108689

PubMed Abstract | CrossRef Full Text | Google Scholar

6. Sedighi M, Razavi S, Navab-Moghadam F, Khamseh ME, Alaei-Shahmiri F, Mehrtash A, et al. Comparison of Gut Microbiota in Adult Patients With Type 2 Diabetes and Healthy Individuals. Microbial Pathogene (2017) 111:362–9. doi: 10.1016/j.micpath.2017.08.038

CrossRef Full Text | Google Scholar

7. Medina-Vera I, Sanchez-Tapia M, Noriega-López L, Granados-Portillo O, Guevara-Cruz M, Flores-López A, et al. A Dietary Intervention With Functional Foods Reduces Metabolic Endotoxaemia and Attenuates Biochemical Abnormalities by Modifying Faecal Microbiota in People With Type 2 Diabetes. Diabetes Metab (2019) 45(2):122–31. doi: 10.1016/j.diabet.2018.09.004

PubMed Abstract | CrossRef Full Text | Google Scholar

8. Motiani KK, Collado MC, Eskelinen J-J, Virtanen KA, Löyttyniemi E, Salminen S, et al. Exercise Training Modulates Gut Microbiota Profile and Improves Endotoxemia. Med Sci Sports Exercise (2020) 52(1):94. doi: 10.1249/MSS.0000000000002112

CrossRef Full Text | Google Scholar

9. Brønden A, Mikkelsen K, Sonne DP, Hansen M, Våben C, Gabe MN, et al. Glucose-Lowering Effects and Mechanisms of the Bile Acid-Sequestering Resin Sevelamer. Diabetes Obes Metab (2018) 20(7):1623–31. doi: 10.1111/dom.13272

PubMed Abstract | CrossRef Full Text | Google Scholar

10. Vallianou NG, Stratigou T, Tsagarakis S. Metformin and Gut Microbiota: Their Interactions and Their Impact on Diabetes. Hormones (2019) 18(2):141–4. doi: 10.1007/s42000-019-00093-w

PubMed Abstract | CrossRef Full Text | Google Scholar

11. Sun L, Xie C, Wang G, Wu Y, Wu Q, Wang X, et al. Gut Microbiota and Intestinal FXR Mediate the Clinical Benefits of Metformin. Nat Med (2018) 24(12):1919–29. doi: 10.1038/s41591-018-0222-4

PubMed Abstract | CrossRef Full Text | Google Scholar

12. Li WZ, Stirling K, Yang JJ, Zhang L. Gut Microbiota and Diabetes: From Correlation to Causality and Mechanism. World J Diabetes (2020) 11(7):293–308. doi: 10.4239/wjd.v11.i7.293

PubMed Abstract | CrossRef Full Text | Google Scholar

13. Gaike AH, Paul D, Bhute S, Dhotre DP, Pande P, Upadhyaya S, et al. The Gut Microbial Diversity of Newly Diagnosed Diabetics But Not of Prediabetics Is Significantly Different From That of Healthy Nondiabetics. Msystems (2020) 5(2):e00578-19. doi: 10.1128/mSystems.00578-19

PubMed Abstract | CrossRef Full Text | Google Scholar

14. Chen P-C, Chien Y-W, Yang S-C. The Alteration of Gut Microbiota in Newly Diagnosed Type 2 Diabetic Patients. Nutrition (2019) 63:51–6. doi: 10.1016/j.nut.2018.11.019

PubMed Abstract | CrossRef Full Text | Google Scholar

15. Zhou W, Sailani MR, Contrepois K, Zhou Y, Ahadi S, Leopold SR, et al. Longitudinal Multi-Omics of Host–Microbe Dynamics in Prediabetes. Nature (2019) 569(7758):663–71. doi: 10.1038/s41586-019-1236-x

PubMed Abstract | CrossRef Full Text | Google Scholar

16. Wu H, Tremaroli V, Schmidt C, Lundqvist A, Olsson LM, Kramer M, et al. The Gut Microbiota in Prediabetes and Diabetes: A Population-Based Cross-Sectional Study. Cell Metab (2020) 32(3):379–90.e3. doi: 10.1016/j.cmet.2020.06.011

PubMed Abstract | CrossRef Full Text | Google Scholar

17. Zhao X, Zhang Y, Guo R, Yu W, Zhang F, Wu F, et al. The Alteration in Composition and Function of Gut Microbiome in Patients With Type 2 Diabetes. J Diabetes Res (2020) 2020 doi: 10.1155/2020/8842651

CrossRef Full Text | Google Scholar

18. Everard A, Belzer C, Geurts L, Ouwerkerk JP, Druart C, Bindels LB, et al. Cross-Talk Between Akkermansia Muciniphila and Intestinal Epithelium Controls Diet-Induced Obesity. Proc Natl Acad Sci (2013) 110(22):9066–71. doi: 10.1073/pnas.1219451110

PubMed Abstract | CrossRef Full Text | Google Scholar

19. Liu X, Mao B, Gu J, Wu J, Cui S, Wang G, et al. Blautia—a New Functional Genus With Potential Probiotic Properties? Gut Microbes (2021) 13(1):1–21. doi: 10.1080/19490976.2021.1875796

CrossRef Full Text | Google Scholar

20. Wang Z, Saha S, Van Horn S, Thomas E, Traini C, Sathe G, et al. Gut Microbiome Differences Between Metformin-and Liraglutide-Treated T2 DM Subjects. Endocrinol Diabetes Metab (2018) 1(1):e00009.

PubMed Abstract | Google Scholar

21. Wu H, Esteve E, Tremaroli V, Khan MT, Caesar R, Mannerås-Holm L, et al. Metformin Alters the Gut Microbiome of Individuals With Treatment-Naive Type 2 Diabetes, Contributing to the Therapeutic Effects of the Drug. Nat Med (2017) 23(7):850–8. doi: 10.1038/nm.4345

PubMed Abstract | CrossRef Full Text | Google Scholar

22. De La Cuesta-Zuluaga J, Mueller NT, Corrales-Agudelo V, Velásquez-Mejía EP, Carmona JA, Abad JM, et al. Metformin Is Associated With Higher Relative Abundance of Mucin-Degrading Akkermansia Muciniphila and Several Short-Chain Fatty Acid–Producing Microbiota in the Gut. Diabetes Care (2017) 40(1):54–62. doi: 10.2337/dc16-1324

PubMed Abstract | CrossRef Full Text | Google Scholar

23. Gu Y, Wang X, Li J, Zhang Y, Zhong H, Liu R, et al. Analyses of Gut Microbiota and Plasma Bile Acids Enable Stratification of Patients for Antidiabetic Treatment. Nat Commun (2017) 8(1):1–12. doi: 10.1038/s41467-017-01682-2

PubMed Abstract | CrossRef Full Text | Google Scholar

24. Su B, Liu H, Li J, Sunli Y, Liu B, Liu D, et al. Acarbose Treatment Affects the Serum Levels of Inflammatory Cytokines and the Gut Content of Bifidobacteria in C Hinese Patients With Type 2 Diabetes Mellitus. J Diabetes (2015) 7(5):729–39. doi: 10.1111/1753-0407.12232

PubMed Abstract | CrossRef Full Text | Google Scholar

25. Shang J, Liu F, Zhang B, Dong K, Lu M, Jiang R, et al. Liraglutide-Induced Structural Modulation of the Gut Microbiota in Patients With Type 2 Diabetes Mellitus. PeerJ (2021) 9:e11128. doi: 10.7717/peerj.11128

PubMed Abstract | CrossRef Full Text | Google Scholar

26. van Bommel E, Herrema H, Davids M, Kramer M, Nieuwdorp M, van Raalte D. Effects of 12-Week Treatment With Dapagliflozin and Gliclazide on Faecal Microbiome: Results of a Double-Blind Randomized Trial in Patients With Type 2 Diabetes. Diabetes Metab (2020) 46(2):164–8. doi: 10.1016/j.diabet.2019.11.005

PubMed Abstract | CrossRef Full Text | Google Scholar

27. Lv Z, Guo Y. Metformin and its Benefits for Various Diseases. Front Endocrinol (2020) 11:191. doi: 10.3389/fendo.2020.00191

CrossRef Full Text | Google Scholar

28. Ryan PM, Patterson E, Carafa I, Mandal R, Wishart DS, Dinan TG, et al. Metformin and Dipeptidyl Peptidase-4 Inhibitor Differentially Modulate the Intestinal Microbiota and Plasma Metabolome of Metabolically Dysfunctional Mice. Can J Diabetes (2020) 44(2):146–55.e2. doi: 10.1016/j.jcjd.2019.05.008

PubMed Abstract | CrossRef Full Text | Google Scholar

29. Shin N-R, Lee J-C, Lee H-Y, Kim M-S, Whon TW, Lee M-S, et al. An Increase in the Akkermansia Spp. Population Induced by Metformin Treatment Improves Glucose Homeostasis in Diet-Induced Obese Mice. Gut (2014) 63(5):727–35.

PubMed Abstract | Google Scholar

30. Lee H, Ko G. Effect of Metformin on Metabolic Improvement and Gut Microbiota. Appl Environ Microbiol (2014) 80(19):5935–43. doi: 10.1128/AEM.01357-14

PubMed Abstract | CrossRef Full Text | Google Scholar

31. Bornstein S, Moschetta M, Kawano Y, Sacco A, Huynh D, Brooks D, et al. Metformin Affects Cortical Bone Mass and Marrow Adiposity in Diet-Induced Obesity in Male Mice. Endocrinology (2017) 158(10):3369–85. doi: 10.1210/en.2017-00299

PubMed Abstract | CrossRef Full Text | Google Scholar

32. Lee H, Lee Y, Kim J, An J, Lee S, Kong H, et al. Modulation of the Gut Microbiota by Metformin Improves Metabolic Profiles in Aged Obese Mice. Gut Microbes (2018) 9(2):155–65. doi: 10.1080/19490976.2017.1405209

PubMed Abstract | CrossRef Full Text | Google Scholar

33. Wang J-H, Bose S, Shin NR, Chin Y-W, Choi YH, Kim H. Pharmaceutical Impact of Houttuynia Cordata and Metformin Combination on High-Fat-Diet-Induced Metabolic Disorders: Link to Intestinal Microbiota and Metabolic Endotoxemia. Front Endocrinol (2018) 620. doi: 10.3389/fendo.2018.00620

CrossRef Full Text | Google Scholar

34. Zheng J, Li H, Zhang X, Jiang M, Luo C, Lu Z, et al. Prebiotic Mannan-Oligosaccharides Augment the Hypoglycemic Effects of Metformin in Correlation With Modulating Gut Microbiota. J Agric Food Chem (2018) 66(23):5821–31. doi: 10.1021/acs.jafc.8b00829

PubMed Abstract | CrossRef Full Text | Google Scholar

35. Ji S, Wang L, Li L. Effect of Metformin on Short-Term High-Fat Diet-Induced Weight Gain and Anxiety-Like Behavior and the Gut Microbiota. Front Endocrinol (2019) 704. doi: 10.3389/fendo.2019.00704

CrossRef Full Text | Google Scholar

36. Brandt A, Hernández-Arriaga A, Kehm R, Sánchez V, Jin CJ, Nier A, et al. Metformin Attenuates the Onset of Non-Alcoholic Fatty Liver Disease and Affects Intestinal Microbiota and Barrier in Small Intestine. Sci Rep (2019) 9(1):1–14. doi: 10.1038/s41598-019-43228-0

PubMed Abstract | CrossRef Full Text | Google Scholar

37. Chung E, Elmassry MM, Kottapalli P, Kottapalli KR, Kaur G, Dufour JM, et al. Metabolic Benefits of Annatto-Extracted Tocotrienol on Glucose Homeostasis, Inflammation, and Gut Microbiome. Nutr Res (2020) 77:97–107. doi: 10.1016/j.nutres.2020.04.001

PubMed Abstract | CrossRef Full Text | Google Scholar

38. Ahmadi S, Razazan A, Nagpal R, Jain S, Wang B, Mishra SP, et al. Metformin Reduces Aging-Related Leaky Gut and Improves Cognitive Function by Beneficially Modulating Gut Microbiome/Goblet Cell/Mucin Axis. J Gerontol: Ser A (2020) 75(7):e9–e21. doi: 10.1093/gerona/glaa056

CrossRef Full Text | Google Scholar

39. Lee DM, Battson ML, Jarrell DK, Hou S, Ecton KE, Weir TL, et al. SGLT2 Inhibition via Dapagliflozin Improves Generalized Vascular Dysfunction and Alters the Gut Microbiota in Type 2 Diabetic Mice. Cardiovasc Diabetol (2018) 17(1):1–14. doi: 10.1186/s12933-018-0708-x

PubMed Abstract | CrossRef Full Text | Google Scholar

40. Gao K, Yang R, Zhang J, Wang Z, Jia C, Zhang F, et al. Effects of Qijian Mixture on Type 2 Diabetes Assessed by Metabonomics, Gut Microbiota and Network Pharmacology. Pharmacol Res (2018) 130:93–109. doi: 10.1016/j.phrs.2018.01.011

PubMed Abstract | CrossRef Full Text | Google Scholar

41. Zhang W, Xu J-H, Yu T, Chen Q-K. Effects of Berberine and Metformin on Intestinal Inflammation and Gut Microbiome Composition in Db/Db Mice. Biomed Pharmacother (2019) 118:109131. doi: 10.1016/j.biopha.2019.109131

PubMed Abstract | CrossRef Full Text | Google Scholar

42. Deng G, Cha Y, Zhang G. Comparison of Human and Animal Fecal Microbiota With Illumina Sequencing of 16S rRNA Tags. Ecol Sci (2014) 33(5):851–7.

Google Scholar

43. Turroni F, Milani C, Duranti S, Mancabelli L, Mangifesta M, Viappiani A, et al. Deciphering Bifidobacterial-Mediated Metabolic Interactions and Their Impact on Gut Microbiota by a Multi-Omics Approach. ISME J (2016) 10(7):1656–68. doi: 10.1038/ismej.2015.236

PubMed Abstract | CrossRef Full Text | Google Scholar

44. Weng J, Ji L, Jia W, Lu J, Zhou Z, Zou D, et al. Standards of Care for Type 2 Diabetes in China. Diabetes/metabol Res Rev (2016) 32(5):442. doi: 10.1002/dmrr.2827

CrossRef Full Text | Google Scholar

45. Zhang JP, Wang N, Xing XY, Yang ZJ, Wang X, Yang WY. Efficacy of Acarbose and Metformin in Newly Diagnosed Type 2 Diabetes Patients Stratified by HbA1c Levels. J Diabetes (2016) 8(4):559–67. doi: 10.1111/1753-0407.12337

PubMed Abstract | CrossRef Full Text | Google Scholar

46. Baxter NT, Lesniak NA, Sinani H, Schloss PD, Koropatkin NM. The Glucoamylase Inhibitor Acarbose has a Diet-Dependent and Reversible Effect on the Murine Gut Microbiome. Msphere (2019) 4(1):e00528-18. doi: 10.1128/mSphere.00528-18

PubMed Abstract | CrossRef Full Text | Google Scholar

47. Zhang M, Feng R, Yang M, Qian C, Wang Z, Liu W, et al. Effects of Metformin, Acarbose, and Sitagliptin Monotherapy on Gut Microbiota in Zucker Diabetic Fatty Rats. BMJ Open Diabetes Res Care (2019) 7(1):e000717. doi: 10.1136/bmjdrc-2019-000717

PubMed Abstract | CrossRef Full Text | Google Scholar

48. Zhang X, Fang Z, Zhang C, Xia H, Jie Z, Han X, et al. Effects of Acarbose on the Gut Microbiota of Prediabetic Patients: A Randomized, Double-Blind, Controlled Crossover Trial. Diabetes Ther (2017) 8(2):293–307. doi: 10.1007/s13300-017-0226-y

PubMed Abstract | CrossRef Full Text | Google Scholar

49. Liao X, Song L, Zeng B, Liu B, Qiu Y, Qu H, et al. Alteration of Gut Microbiota Induced by DPP-4i Treatment Improves Glucose Homeostasis. EBioMedicine (2019) 44:665–74. doi: 10.1016/j.ebiom.2019.03.057

PubMed Abstract | CrossRef Full Text | Google Scholar

50. Olivares M, Neyrinck AM, Pötgens SA, Beaumont M, Salazar N, Cani PD, et al. The DPP-4 Inhibitor Vildagliptin Impacts the Gut Microbiota and Prevents Disruption of Intestinal Homeostasis Induced by a Western Diet in Mice. Diabetologia (2018) 61(8):1838–48. doi: 10.1007/s00125-018-4647-6

PubMed Abstract | CrossRef Full Text | Google Scholar

51. Flint HJ, Scott KP, Duncan SH, Louis P, Forano E. Microbial Degradation of Complex Carbohydrates in the Gut. Gut Microbes (2012) 3(4):289–306. doi: 10.4161/gmic.19897

PubMed Abstract | CrossRef Full Text | Google Scholar

52. Yan X, Feng B, Li P, Tang Z, Wang L. Microflora Disturbance During Progression of Glucose Intolerance and Effect of Sitagliptin: An Animal Study. J Diabetes Res (2016) 2016. doi: 10.1155/2016/2093171

CrossRef Full Text | Google Scholar

53. Zhao L, Chen Y, Xia F, Abudukerimu B, Zhang W, Guo Y, et al. A Glucagon-Like Peptide-1 Receptor Agonist Lowers Weight by Modulating the Structure of Gut Microbiota. Front Endocrinol (2018) 9:233. doi: 10.3389/fendo.2018.00233

CrossRef Full Text | Google Scholar

54. Smits MM, Fluitman KS, Herrema H, Davids M, Kramer MH, Groen AK, et al. Liraglutide and Sitagliptin Have No Effect on Intestinal Microbiota Composition: A 12-Week Randomized Placebo-Controlled Trial in Adults With Type 2 Diabetes. Diabetes Metab (2021), 101223. doi: 10.1016/j.diabet.2021.101223

PubMed Abstract | CrossRef Full Text | Google Scholar

55. Johnston R, Uthman O, Cummins E, Clar C, Royle P, Colquitt J, et al. Canagliflozin, Dapagliflozin and Empagliflozin Monotherapy for Treating Type 2 Diabetes: Systematic Review and Economic Evaluation. Health Technol Assess (2017) 21(2):1–218. doi: 10.3310/hta21020

PubMed Abstract | CrossRef Full Text | Google Scholar

56. Shapiro H, Kolodziejczyk AA, Halstuch D, Elinav E. Bile Acids in Glucose Metabolism in Health and Disease. J Exp Med (2018) 215(2):383–96. doi: 10.1084/jem.20171965

PubMed Abstract | CrossRef Full Text | Google Scholar

57. Zhang Y, Gu Y, Ren H, Wang S, Zhong H, Zhao X, et al. Gut Microbiome-Related Effects of Berberine and Probiotics on Type 2 Diabetes (the PREMOTE Study). Nat Commun (2020) 11(1):1–12. doi: 10.1038/s41467-020-18414-8

PubMed Abstract | CrossRef Full Text | Google Scholar

58. Xu X, Gao Z, Yang F, Yang Y, Chen L, Han L, et al. Antidiabetic Effects of Gegen Qinlian Decoction via the Gut Microbiota Are Attributable to its Key Ingredient Berberine. Genomics Proteomics Bioinf (2020). doi: 10.1016/j.gpb.2019.09.007

CrossRef Full Text | Google Scholar

59. Tong X, Xu J, Lian F, Yu X, Zhao Y, Xu L, et al. Structural Alteration of Gut Microbiota During the Amelioration of Human Type 2 Diabetes With Hyperlipidemia by Metformin and a Traditional Chinese Herbal Formula: A Multicenter, Randomized, Open Label Clinical Trial. MBio (2018) 9(3):e02392-17. doi: 10.1128/mBio.02392-17

PubMed Abstract | CrossRef Full Text | Google Scholar

60. Pu S, Zhang Y, Xu X. Individual Difference of Growth Condition and Alkaloid Content of Chinese Goldthread (Coptis Chinensis). Chin Tradit And Herbal Drugs (1999) 30:373–6.

Google Scholar

61. Čerňáková M, Košťálová D. Antimicrobial Activity of Berberine—A Constituent Ofmahonia Aquifolium. Folia Microbiol (2002) 47(4):375–8.

Google Scholar

62. Hwang J-T, Kwon DY, Yoon SH. AMP-Activated Protein Kinase: A Potential Target for the Diseases Prevention by Natural Occurring Polyphenols. New Biotechnol (2009) 26(1-2):17–22. doi: 10.1016/j.nbt.2009.03.005

CrossRef Full Text | Google Scholar

63. Yu J, Zhang H, Chen L, Ruan Y, Chen Y, Liu Q. Disease-Associated Gut Microbiota Reduces the Profile of Secondary Bile Acids in Pediatric Nonalcoholic Fatty Liver Disease. Front Cell Infect Microbiol (2021) 11:698852. doi: 10.3389/fcimb.2021.698852

PubMed Abstract | CrossRef Full Text | Google Scholar

64. Lepercq P, Gérard P, Béguet F, Grill J-p, Relano P, Cayuela C, et al. Isolates From Normal Human Intestinal Flora But Not Lactic Acid Bacteria Exhibit 7α-and 7β-Hydroxysteroid Dehydrogenase Activities. Microbial Ecol Health Dis (2004) 16(4):195–201. doi: 10.1080/08910600410033393

CrossRef Full Text | Google Scholar

65. Cui X, Qian D-W, Jiang S, Shang E-X, Zhu Z-H, Duan J-A. Scutellariae Radix and Coptidis Rhizoma Improve Glucose and Lipid Metabolism in T2DM Rats via Regulation of the Metabolic Profiling and MAPK/PI3K/Akt Signaling Pathway. Int J Mol Sci (2018) 19(11):3634. doi: 10.3390/ijms19113634

CrossRef Full Text | Google Scholar

66. Xu J, Lian F, Zhao L, Zhao Y, Chen X, Zhang X, et al. Structural Modulation of Gut Microbiota During Alleviation of Type 2 Diabetes With a Chinese Herbal Formula. ISME J (2015) 9(3):552–62. doi: 10.1038/ismej.2014.177

PubMed Abstract | CrossRef Full Text | Google Scholar

67. Shin NR, Gu N, Choi HS, Kim H. Combined Effects of Scutellaria Baicalensis With Metformin on Glucose Tolerance of Patients With Type 2 Diabetes via Gut Microbiota Modulation. Am J Physiology-Endocrinol Metab (2020) 318(1):E52–61. doi: 10.1152/ajpendo.00221.2019

CrossRef Full Text | Google Scholar

68. Thingholm LB, Rühlemann MC, Koch M, Fuqua B, Laucke G, Boehm R, et al. Obese Individuals With and Without Type 2 Diabetes Show Different Gut Microbial Functional Capacity and Composition. Cell Host Microbe (2019) 26(2):252–64.e10. doi: 10.1016/j.chom.2019.07.004

PubMed Abstract | CrossRef Full Text | Google Scholar

69. Cao Y, Yao G, Sheng Y, Yang L, Wang Z, Yang Z, et al. JinQi Jiangtang Tablet Regulates Gut Microbiota and Improve Insulin Sensitivity in Type 2 Diabetes Mice. J Diabetes Res (2019) 2019. doi: 10.1155/2019/1872134

CrossRef Full Text | Google Scholar

70. Sun X, Guo L, Shang H, Ren M, Wang Y, Huo D, et al. The Cost-Effectiveness Analysis of JinQi Jiangtang Tablets for the Treatment on Prediabetes: A Randomized, Double-Blind, Placebo-Controlled, Multicenter Design. Trials (2015) 16(1):1–11. doi: 10.1186/s13063-015-0990-9

PubMed Abstract | CrossRef Full Text | Google Scholar

71. Harrison SA, Gunn N, Neff GW, Kohli A, Liu L, Flyer A, et al. A Phase 2, Proof of Concept, Randomised Controlled Trial of Berberine Ursodeoxycholate in Patients With Presumed Non-Alcoholic Steatohepatitis and Type 2 Diabetes. Nat Commun (2021) 12(1):1–8. doi: 10.1038/s41467-021-25701-5

PubMed Abstract | CrossRef Full Text | Google Scholar

72. Lyu Y, Zhang Y, Yang M, Lin L, Yang X, Cheung SCK, et al. Pharmacokinetic Interactions Between Metformin and Berberine in Rats: Role of Oral Administration Sequences and Microbiota. Life Sci (2019) 235:116818. doi: 10.1016/j.lfs.2019.116818

PubMed Abstract | CrossRef Full Text | Google Scholar

73. Magne F, Gotteland M, Gauthier L, Zazueta A, Pesoa S, Navarrete P, et al. The Firmicutes/Bacteroidetes Ratio: A Relevant Marker of Gut Dysbiosis in Obese Patients? Nutrients (2020) 12(5):1474. doi: 10.3390/nu12051474

CrossRef Full Text | Google Scholar

74. Dao MC, Everard A, Aron-Wisnewsky J, Sokolovska N, Prifti E, Verger EO, et al. Akkermansia Muciniphila and Improved Metabolic Health During a Dietary Intervention in Obesity: Relationship With Gut Microbiome Richness and Ecology. Gut (2016) 65(3):426–36. doi: 10.1136/gutjnl-2014-308778

PubMed Abstract | CrossRef Full Text | Google Scholar

75. Dickson I. IBS: High FODMAP Diet Induces LPS-Derived Intestinal Inflammation and Visceral Hypersensitivity. Nat Rev Gastroenterol Hepatol (2018) 15(2):68.

Google Scholar

76. Duncan SH, Belenguer A, Holtrop G, Johnstone AM, Flint HJ, Lobley GE. Reduced Dietary Intake of Carbohydrates by Obese Subjects Results in Decreased Concentrations of Butyrate and Butyrate-Producing Bacteria in Feces. Appl Environ Microbiol (2007) 73(4):1073–8. doi: 10.1128/AEM.02340-06

PubMed Abstract | CrossRef Full Text | Google Scholar

77. Takewaki F, Nakajima H, Takewaki D, Hashimoto Y, Majima S, Okada H, et al. Habitual Dietary Intake Affects the Altered Pattern of Gut Microbiome by Acarbose in Patients With Type 2 Diabetes. Nutrients (2021) 13(6). doi: 10.3390/nu13062107

PubMed Abstract | CrossRef Full Text | Google Scholar

78. Ejtahed H-S, Tito RY, Siadat S-D, Hasani-Ranjbar S, Hoseini-Tavassol Z, Rymenans L, et al. Metformin Induces Weight Loss Associated With Gut Microbiota Alteration in non-Diabetic Obese Women: A Randomized Double-Blind Clinical Trial. Eur J Endocrinol (2019) 180(3):165–76. doi: 10.1530/EJE-18-0826

PubMed Abstract | CrossRef Full Text | Google Scholar

79. Wang J-H, Bose S, Lim S-K, Ansari A, Chin Y-W, Choi HS, et al. Houttuynia Cordata Facilitates Metformin on Ameliorating Insulin Resistance Associated With Gut Microbiota Alteration in OLETF Rats. Genes (2017) 8(10):239. doi: 10.3390/genes8100239

CrossRef Full Text | Google Scholar

80. Liu Y, Wang Y, Ni Y, Cheung CKY, Lam KSL, Wang Y, et al. Gut Microbiome Fermentation Determines the Efficacy of Exercise for Diabetes Prevention. Cell Metab (2020) 31(1):77–91.e5. doi: 10.1016/j.cmet.2019.11.001

PubMed Abstract | CrossRef Full Text | Google Scholar

81. Sanders ME, Merenstein DJ, Reid G, Gibson GR, Rastall RA. Probiotics and Prebiotics in Intestinal Health and Disease: From Biology to the Clinic. Nat Rev Gastroenterol Hepatol (2019) 16(10):605–16. doi: 10.1038/s41575-019-0173-3

PubMed Abstract | CrossRef Full Text | Google Scholar

82. Burton JH, Johnson M, Johnson J, Hsia DS, Greenway FL, Heiman ML. Addition of a Gastrointestinal Microbiome Modulator to Metformin Improves Metformin Tolerance and Fasting Glucose Levels. J Diabetes Sci Technol (2015) 9(4):808–14. doi: 10.1177/1932296815577425

PubMed Abstract | CrossRef Full Text | Google Scholar

83. Bolam DN, Sonnenburg JL. Mechanistic Insight Into Polysaccharide Use Within the Intestinal Microbiota. Gut Microbes (2011) 2(2):86–90. doi: 10.4161/gmic.2.2.15232

PubMed Abstract | CrossRef Full Text | Google Scholar

84. Palacios T, Vitetta L, Coulson S, Madigan CD, Denyer GS, Caterson ID. The Effect of a Novel Probiotic on Metabolic Biomarkers in Adults With Prediabetes and Recently Diagnosed Type 2 Diabetes Mellitus: Study Protocol for a Randomized Controlled Trial. Trials (2017) 18(1):7. doi: 10.1186/s13063-016-1762-x

PubMed Abstract | CrossRef Full Text | Google Scholar

85. Machado MV, Cortez-Pinto H. Diet, Microbiota, Obesity, and NAFLD: A Dangerous Quartet. Int J Mol Sci (2016) 17(4):481. doi: 10.3390/ijms17040481

PubMed Abstract | CrossRef Full Text | Google Scholar

86. Saad M, Santos A, Prada P. Linking Gut Microbiota and Inflammation to Obesity and Insulin Resistance. Physiology (2016). doi: 10.1152/physiol.00041.2015

PubMed Abstract | CrossRef Full Text | Google Scholar

87. Keshavarzian A, Green SJ, Engen PA, Voigt RM, Naqib A, Forsyth CB, et al. Colonic Bacterial Composition in Parkinson's Disease. Movement Disord (2015) 30(10):1351–60. doi: 10.1002/mds.26307

PubMed Abstract | CrossRef Full Text | Google Scholar

Keywords: medication, traditional Chinese medicine, diabetes, microbiota, Akkermansia

Citation: Chu N, Chan JCN and Chow E (2022) Pharmacomicrobiomics in Western Medicine and Traditional Chinese Medicine in Type 2 Diabetes. Front. Endocrinol. 13:857090. doi: 10.3389/fendo.2022.857090

Received: 18 January 2022; Accepted: 01 April 2022;
Published: 04 May 2022.

Edited by:

Jian-Quan Luo, Central South University, China

Reviewed by:

Huating Li, Shanghai Sixth People’s Hospital, China
Emanuel Vamanu, University of Agricultural Sciences and Veterinary Medicine, Romania

Copyright © 2022 Chu, Chan and Chow. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

*Correspondence: Elaine Chow, ZS5jaG93QGN1aGsuZWR1Lmhr

Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.