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ORIGINAL RESEARCH article

Front. Digit. Health
Sec. Health Informatics
Volume 6 - 2024 | doi: 10.3389/fdgth.2024.1390622

Biofuser: A multi-source data fusion platform for fusing the data of fermentation process devices

Provisionally accepted
Dequan Zhang Dequan Zhang 1*Wei Jiang Wei Jiang 2Jincheng Lou Jincheng Lou 2Xuanzhou Han Xuanzhou Han 2Jianye Xia Jianye Xia 1,2*
  • 1 State Key Laboratory of Bioreactor Engineering, School of Biotechnology, East China University of Science and Technology, Shanghai, China
  • 2 State Key Laboratory of Engineering Biology for Biomanufacturing, Tianjin Insti-tute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, China, Tianjin, China

The final, formatted version of the article will be published soon.

    In the past decade, the progress of traditional bioprocess optimization technique has lagged far behind the rapid development of synthetic biology, which has hindered the industrialization process of synthetic biology achievements. Recently, more and more advanced equipment and sensors have been applied for bioprocess online inspection to improve the understanding and optimization efficiency of the process. This has resulted in large amounts of process data from various sources with different communication protocols and data formats, requiring the development of techniques for integration and fusion of these heterogeneous data. Here we describe a multi-source fusion platform (Biofuser) that is designed to collect and process multi-source heterogeneous data. Biofuser integrates various data to a unique format that facilitates data visualization, further analysis, model construction, and automatic process control. Moreover, Biofuser also provides additional APIs that support machine learning or deep learning using the integrated data. We illustrate the application of Biofuser with a case study on riboflavin fermentation process development, demonstrating its ability in device faulty identification, critical process factor identification, and bioprocess prediction. Biofuser has the potential to significantly enhance the development of fermentation optimization techniques and is expected to become an important infrastructure for artificial intelligent integration into bioprocess optimization, thereby promoting the development of intelligent biomanufacturing.

    Keywords: Bioprocess Optimization, Multi-source heterogeneous data, multi-sources data fusion, Biofuser, Intelligent biomanufacturing

    Received: 26 Feb 2024; Accepted: 08 Oct 2024.

    Copyright: © 2024 Zhang, Jiang, Lou, Han and Xia. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

    * Correspondence:
    Dequan Zhang, State Key Laboratory of Bioreactor Engineering, School of Biotechnology, East China University of Science and Technology, Shanghai, 200237, China
    Jianye Xia, State Key Laboratory of Bioreactor Engineering, School of Biotechnology, East China University of Science and Technology, Shanghai, 200237, China

    Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.