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ORIGINAL RESEARCH article

Front. Cell. Infect. Microbiol.
Sec. Clinical Infectious Diseases
Volume 14 - 2024 | doi: 10.3389/fcimb.2024.1488130
This article is part of the Research Topic Molecular mechanisms and clinical studies of multi-organ dysfunction in sepsis associated with pathogenic microbial infection View all articles

CISepsis: A Causal Inference Framework for Early Sepsis Detection

Provisionally accepted
  • 1 School of Microelectronics, Tianjin University, Tianjin, China
  • 2 School of Pharmaceutical Science and Technology, Tianjin University, Tianjin, China
  • 3 Department of Cardiovascular Surgery Intensive Care Unit,Tianjin Chest Hospital, Tianjin, China
  • 4 School of Electrical and Information Engineering, Tianjin University, Tianjin, China

The final, formatted version of the article will be published soon.

    The early prediction of sepsis based on machine learning or deep learning has achieved good results. Most of the methods use structured data stored in electronic medical records, but the pathological characteristics of sepsis involve complex interactions between multiple physiological systems and signaling pathways, resulting in mixed structured data. Some researchers will introduce unstructured data when also introduce confounders. These confounders mask the direct causality of sepsis, leading the model to learn misleading correlations. Finally, it affects the generalization ability, robustness, and interpretability of the model. To address this challenge, we propose an early sepsis prediction approach based on causal inference which can remove confounding effects and capture causal relationships. First, we analyze the relationship between each type of observation, confounder, and label to create a causal structure diagram. To eliminate the effects of different confounders separately, the methods of back-door adjustment and instrumental variable are used. Specifically, we learn the confounder and an instrumental variable based on mutual information from various observed data and eliminate the influence of the confounder by optimizing mutual information. We use back-door adjustment to eliminate the influence of confounders in clinical notes and static indicators on the true causal effect. Our method is named CISepsis, we validate on the MIMIC-IV dataset, that our method shows better performance, we also demonstrate the effectiveness of our method through ablation experiments.

    Keywords: Sepsis, MIMIC-IV, causal inference, Back-door Intervention, Instrumental variable

    Received: 29 Aug 2024; Accepted: 28 Oct 2024.

    Copyright: © 2024 Li, Li, Jiao, Wu and Nie. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

    * Correspondence:
    Dongchen Li, School of Microelectronics, Tianjin University, Tianjin, 300072, China
    Weizhi Nie, School of Electrical and Information Engineering, Tianjin University, Tianjin, 300072, China

    Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.