Frontiers in Bioinformatics

Original Research

Published on 04 Jan 2024

Genomic risk prediction of cardiovascular diseases among type 2 diabetes patients in the UK Biobank

in Genomic Analysis

Yixuan Ye
Jiaqi Hu
Fuyuan Pang
Can Cui
Hongyu Zhao

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1320748

2,365 views
1 citation

Methods

Published on 03 Jan 2024

Identifying epigenetic aging moderators using the epigenetic pacemaker

in Genomic Analysis

Colin Farrell
Chanyue Hu
Kalsuda Lapborisuth
Kyle Pu
Sagi Snir
Matteo Pellegrini

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1308680

1,466 views
1 citation

Original Research

Published on 22 Dec 2023

Improving fluorescence lifetime imaging microscopy phasor accuracy using convolutional neural networks

in Computational BioImaging

Varun Mannam
Jacob P. Brandt
Cody J. Smith
Xiaotong Yuan
Scott Howard

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1335413

2,637 views
5 citations

Original Research

Published on 18 Dec 2023

Attention network for predicting T-cell receptor–peptide binding can associate attention with interpretable protein structural properties

in Protein Bioinformatics

Kyohei Koyama
Kosuke Hashimoto
Chioko Nagao
Kenji Mizuguchi

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1274599

2,818 views
8 citations

Original Research

Published on 15 Dec 2023

Efficient semi-supervised semantic segmentation of electron microscopy cancer images with sparse annotations

in Computational BioImaging

Lucas Pagano
Guillaume Thibault
Walid Bousselham
Jessica L. Riesterer
Xubo Song
Joe W. Gray

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1308707

1,557 views

Brief Research Report

Published on 15 Dec 2023

Completing a molecular timetree of apes and monkeys

in Evolutionary Bioinformatics

Jack M. Craig
Grace L. Bamba
Jose Barba-Montoya
S. Blair Hedges
Sudhir Kumar

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1284744

2,167 views
1 citation

Original Research

Published on 15 Dec 2023

Segmentation of cellular ultrastructures on sparsely labeled 3D electron microscopy images using deep learning

in Computational BioImaging

Archana Machireddy
Guillaume Thibault
Kevin G. Loftis
Kevin Stoltz
Cecilia E. Bueno
Hannah R. Smith
Jessica L. Riesterer
Joe W. Gray
Xubo Song

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1308708

2,214 views
6 citations

Methods

Published on 13 Dec 2023

Proteinortho6: pseudo-reciprocal best alignment heuristic for graph-based detection of (co-)orthologs

in Protein Bioinformatics

Paul Klemm
Peter F. Stadler
Marcus Lechner

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1322477

1,985 views
10 citations

Original Research

Published on 11 Dec 2023

Reconstructing diploid 3D chromatin structures from single cell Hi-C data with a polymer-based approach

in Genomic Analysis

Jan Rothörl
Maarten A. Brems
Tim J. Stevens
Peter Virnau

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1284484

1,488 views
1 citation

Original Research

Published on 07 Dec 2023

Benchmarking software tools for trimming adapters and merging next-generation sequencing data for ancient DNA

in Genomic Analysis

Annette Lien
Leonardo Pestana Legori
Louis Kraft
Peter Wad Sackett
Gabriel Renaud

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1260486

4,492 views
6 citations

Methods

Published on 04 Dec 2023

RCSB Protein Data Bank: visualizing groups of experimentally determined PDB structures alongside computed structure models of proteins

in Data Visualization

Joan Segura
Yana Rose
Chunxiao Bi
Jose Duarte
Stephen K. Burley
Sebastian Bittrich

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1311287

3,317 views
10 citations

Original Research

Published on 30 Nov 2023

Real-time open-source FLIM analysis

in Computational BioImaging

Kevin K. D. Tan
Mark A. Tsuchida
Jenu V. Chacko
Niklas A. Gahm
Kevin W. Eliceiri

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1286983

3,387 views
3 citations

Mini Review

Published on 24 Nov 2023

Cluster analysis for localisation-based data sets: dos and don’ts when quantifying protein aggregates

in Computational BioImaging

Luca Panconi
Dylan M. Owen
Juliette Griffié

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1237551

1,880 views
1 citation

Perspective

Published on 23 Nov 2023

The promises of large language models for protein design and modeling

in Genomic Analysis

Giorgio Valentini
Dario Malchiodi
Jessica Gliozzo
Marco Mesiti
Mauricio Soto-Gomez
Alberto Cabri
Justin Reese
Elena Casiraghi
Peter N. Robinson

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1304099

11,069 views
16 citations

Technology and Code

Published on 22 Nov 2023

Blob-B-Gone: a lightweight framework for removing blob artifacts from 2D/3D MINFLUX single-particle tracking data

in Computational BioImaging

Bela T. L. Vogler
Francesco Reina
Christian Eggeling

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1268899

1,655 views

Original Research

Published on 14 Nov 2023

Development of an antimicrobial resistance plasmid transfer gene database for enteric bacteria

in Integrative Bioinformatics

Suad Algarni
Steven L. Foley
Hailin Tang
Shaohua Zhao
Dereje D. Gudeta
Bijay K. Khajanchi
Steven C. Ricke
Jing Han

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1279359

2,081 views
4 citations