Frontiers in Bioinformatics

Original Research

Published on 23 Jan 2024

Deep learning-based automated pipeline for blood vessel detection and distribution analysis in multiplexed prostate cancer images

in Computational BioImaging

Grigorios M. Karageorgos
Sanghee Cho
Elizabeth McDonough
Chrystal Chadwick
Soumya Ghose
Jonathan Owens
Kyeong Joo Jung
Raghu Machiraju
Robert West
James D. Brooks

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1296667

2,060 views
2 citations

Original Research

Published on 22 Jan 2024

Complementing Hi-C information for 3D chromatin reconstruction by ChromStruct

in Genomic Analysis

Claudia Caudai
Emanuele Salerno

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1287168

1,023 views

Original Research

Published on 22 Jan 2024

Assessing 2D visual encoding of 3D spatial connectivity

in Data Visualization

Benedetta F. Baldi
Jenny Vuong
Seán I. O’Donoghue

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1232671

1,081 views

Original Research

Published on 15 Jan 2024

A breast cancer-specific combinational QSAR model development using machine learning and deep learning approaches

in Network Bioinformatics

Anush Karampuri
Shyam Perugu

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1328262

2,874 views
4 citations

Technology and Code

Published on 10 Jan 2024

BPAGS: a web application for bacteriocin prediction via feature evaluation using alternating decision tree, genetic algorithm, and linear support vector classifier

in Drug Discovery in Bioinformatics

Suraiya Akhter
John H. Miller

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1284705

3,163 views
5 citations

Perspective

Published on 08 Jan 2024

No-boundary thinking for artificial intelligence in bioinformatics and education

in Integrative Bioinformatics

Prajay Patel
Nisha Pillai
Inimary Toby

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1332902

2,043 views
1 citation

Original Research

Published on 05 Jan 2024

Protein-lipid interactions and protein anchoring modulate the modes of association of the globular domain of the Prion protein and Doppel protein to model membrane patches

in Protein Bioinformatics

Patricia Soto
Davis T. Thalhuber
Frank Luceri
Jamie Janos
Mason R. Borgman
Noah M. Greenwood
Sofia Acosta
Hunter Stoffel

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1321287

1,647 views

Editorial

Published on 05 Jan 2024

Editorial: Expert opinions in protein bioinformatics: 2022

in Protein Bioinformatics

Daisuke Kihara

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1338560

859 views

Hypothesis and Theory

Published on 05 Jan 2024

RxNorm for drug name normalization: a case study of prescription opioids in the FDA adverse events reporting system

in Integrative Bioinformatics

Huyen Le
Ru Chen
Stephen Harris
Hong Fang
Beverly Lyn-Cook
Huixiao Hong
Weigong Ge
Paul Rogers
Weida Tong
Wen Zou

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1328613

2,229 views
2 citations

Original Research

Published on 04 Jan 2024

Genomic risk prediction of cardiovascular diseases among type 2 diabetes patients in the UK Biobank

in Genomic Analysis

Yixuan Ye
Jiaqi Hu
Fuyuan Pang
Can Cui
Hongyu Zhao

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1320748

1,987 views

Methods

Published on 03 Jan 2024

Identifying epigenetic aging moderators using the epigenetic pacemaker

in Genomic Analysis

Colin Farrell
Chanyue Hu
Kalsuda Lapborisuth
Kyle Pu
Sagi Snir
Matteo Pellegrini

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1308680

1,317 views
1 citation

Original Research

Published on 22 Dec 2023

Improving fluorescence lifetime imaging microscopy phasor accuracy using convolutional neural networks

in Computational BioImaging

Varun Mannam
Jacob P. Brandt
Cody J. Smith
Xiaotong Yuan
Scott Howard

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1335413

2,389 views
3 citations

Original Research

Published on 18 Dec 2023

Attention network for predicting T-cell receptor–peptide binding can associate attention with interpretable protein structural properties

in Protein Bioinformatics

Kyohei Koyama
Kosuke Hashimoto
Chioko Nagao
Kenji Mizuguchi

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1274599

2,478 views
7 citations

Original Research

Published on 15 Dec 2023

Efficient semi-supervised semantic segmentation of electron microscopy cancer images with sparse annotations

in Computational BioImaging

Lucas Pagano
Guillaume Thibault
Walid Bousselham
Jessica L. Riesterer
Xubo Song
Joe W. Gray

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1308707

1,412 views

Brief Research Report

Published on 15 Dec 2023

Completing a molecular timetree of apes and monkeys

in Evolutionary Bioinformatics

Jack M. Craig
Grace L. Bamba
Jose Barba-Montoya
S. Blair Hedges
Sudhir Kumar

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1284744

1,923 views
1 citation

Original Research

Published on 15 Dec 2023

Segmentation of cellular ultrastructures on sparsely labeled 3D electron microscopy images using deep learning

in Computational BioImaging

Archana Machireddy
Guillaume Thibault
Kevin G. Loftis
Kevin Stoltz
Cecilia E. Bueno
Hannah R. Smith
Jessica L. Riesterer
Joe W. Gray
Xubo Song

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1308708

1,990 views
5 citations

Navigation group

Articles

Deep learning-based automated pipeline for blood vessel detection and distribution analysis in multiplexed prostate cancer images

Complementing Hi-C information for 3D chromatin reconstruction by ChromStruct

Assessing 2D visual encoding of 3D spatial connectivity

A breast cancer-specific combinational QSAR model development using machine learning and deep learning approaches

BPAGS: a web application for bacteriocin prediction via feature evaluation using alternating decision tree, genetic algorithm, and linear support vector classifier

No-boundary thinking for artificial intelligence in bioinformatics and education

Protein-lipid interactions and protein anchoring modulate the modes of association of the globular domain of the Prion protein and Doppel protein to model membrane patches

Editorial: Expert opinions in protein bioinformatics: 2022

RxNorm for drug name normalization: a case study of prescription opioids in the FDA adverse events reporting system

Genomic risk prediction of cardiovascular diseases among type 2 diabetes patients in the UK Biobank

Identifying epigenetic aging moderators using the epigenetic pacemaker

Improving fluorescence lifetime imaging microscopy phasor accuracy using convolutional neural networks

Attention network for predicting T-cell receptor–peptide binding can associate attention with interpretable protein structural properties

Efficient semi-supervised semantic segmentation of electron microscopy cancer images with sparse annotations

Completing a molecular timetree of apes and monkeys

Segmentation of cellular ultrastructures on sparsely labeled 3D electron microscopy images using deep learning