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BRIEF RESEARCH REPORT article
Front. Bioinform.
Sec. Evolutionary Bioinformatics
Volume 4 - 2024 |
doi: 10.3389/fbinf.2024.1495417
Completing a molecular timetree of Primates
Provisionally accepted- 1 Department of Biology, College of Science and Technology, Temple University, Philadelphia, United States
- 2 Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA, United States
- 3 Center for Biodiversity,College of Science and Technology, Temple University, Philadelphia, Pennsylvania, United States
Primates, consisting of apes, monkeys, tarsiers, and lemurs, are among the most charismatic and well-studied animals on Earth, yet there is no taxonomically complete molecular timetree of the group. Combining the latest large-scale genomic primate phylogeny of 205 recognized species with the 400-species literature consensus tree available from TimeTree.org yields a phylogeny of just 405 primates, with 50 species still missing despite having molecular sequence data in NCBI GenBank. Here, we assemble a timetree of 455 primates, incorporating every species for which molecular data are available. We use a synthetic approach consisting of a literature review for published timetrees, de novo dating of untimed trees, and assembly of timetrees from novel alignments. The resulting near-complete molecular timetree of primates allows us to test two long-standing alternate hypotheses for the origins of primate biodiversity: whether species richness arises at a constant rate, in which case older clades are expected to have more species, or whether some clades exhibit faster rates of speciation than others, in which case these fast clades would be expected to be more species-rich. Consistent with other large-scale macroevolutionary inquiries, we found that the speciation rate is similar across the primate tree of life, albeit with some variation in smaller clades.
Keywords: Primates, phylogeny, Dating, evolution, speciation
Received: 12 Sep 2024; Accepted: 24 Oct 2024.
Copyright: © 2024 Craig, Hedges and Kumar. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
* Correspondence:
Jack M. Craig, Department of Biology, College of Science and Technology, Temple University, Philadelphia, United States
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