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METHODS article

Front. Bioinform.
Sec. Drug Discovery in Bioinformatics
Volume 4 - 2024 | doi: 10.3389/fbinf.2024.1441024

QSPRmodeler -an open source application for molecular predictive analytics

Provisionally accepted
  • 1 Institute for Medical Biology, Polish Academy of Sciences, Łódź, Łódź, Poland
  • 2 Faculty of Chemistry, Adam Mickiewicz University, Poznań, Greater Poland, Poland

The final, formatted version of the article will be published soon.

    The drug design process can be successfully supported using a variety of in-silico methods. Some of these are oriented toward molecular property prediction, which is a key step in the early drug discovery stage. Before experimental validation, drug candidates are usually compared with known experimental data. Technically, this can be achieved using machine learning approaches, in which selected experimental data are used to train the predictive models. The proposed Python software is designed for this purpose. It supports the entire workflow of molecular data processing, starting from raw data preparation followed by molecular descriptor creation and machine learning model training. The predictive capabilities of the resulting models were carefully validated internally and externally. These models can be easily applied to new compounds, including within more complex workflows involving generative approaches.

    Keywords: QSPR, machine learning, drug design, Biological activity, admet

    Received: 30 May 2024; Accepted: 27 Aug 2024.

    Copyright: © 2024 Bachorz, Nowak and Ratajewski. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

    * Correspondence: Rafal A. Bachorz, Institute for Medical Biology, Polish Academy of Sciences, Łódź, 93-232, Łódź, Poland

    Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.