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BRIEF RESEARCH REPORT article

Front. Bioinform.
Sec. Data Visualization
Volume 4 - 2024 | doi: 10.3389/fbinf.2024.1349205
This article is part of the Research Topic 12th and 13th International Meeting on Visualizing Biological Data (VIZBI 2022 & VIZBI 2023) View all 7 articles

Rvisdiff: R package for interactive differential expression visualization

Provisionally accepted
David Barrios David Barrios 1Carlos Prieto Carlos Prieto 2*
  • 1 Bioinformatics Service, Nucleus, University of Salamanca., Salamanca, Spain
  • 2 Bioinformatics, Bioinformatics Service, Nucleus, University of Salamanca., Salamanca, Spain

The final, formatted version of the article will be published soon.

    Rvisdiff is an R/Bioconductor package that generates an interactive interface for the interpretation of differential expression results. It creates a local web page that enables the exploration of statistical analysis results with the generation of auto-analytical visualizations. Users can explore the differential expression results and the source expression data interactively in the same view. The package supports as input the results of popular differential expression packages such as DESeq2, EdgeR and limma. As output, the package generates a local HTML page that can be easily viewed in a web browser. Rvisdiff is freely available at https://bioconductor.org/packages/Rvisdiff.

    Keywords: expression analysis, RNA-Seq, data visualization, Protein array, R package

    Received: 04 Dec 2023; Accepted: 14 Aug 2024.

    Copyright: © 2024 Barrios and Prieto. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

    * Correspondence: Carlos Prieto, Bioinformatics, Bioinformatics Service, Nucleus, University of Salamanca., Salamanca, Spain

    Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.