Deep Learning for Accurate Classification of Conifer Pollen Grains: Enhancing Species Identification in Palynology

Masoud A Rostami ¹ LeMaur Kydd ¹ Behnaz Balmaki ^2* Lee Dyer ³ Julie M Allen ⁴

• ¹ Data Science Division, University of Texas at Arlington, Arlington, United States
• ² Department of Biology, University of Texas at Arlington, Arlington, United States
• ³ Department of Biology, University of Nevada, Reno, United States
• ⁴ Department of Biological Sciences, Virginia Tech, Blacksburg, United States

Accurate identification of pollen grains from Abies (fir), Picea (spruce), and Pinus (pine) is an important method for reconstructing historical environments, past landscapes and understanding human-environment interactions. However, distinguishing between pollen grains of conifer genera poses challenges in palynology due to their morphological similarities. To address this identification challenge, this study leverages advanced deep learning techniques, specifically transfer learning models, which are effective in identifying similarities among detailed features. We evaluated nine different transfer learning architectures: DenseNet201, EfficientNetV2S, InceptionV3, MobileNetV2, ResNet101, ResNet50, VGG16, VGG19, and Xception. Each model was trained and validated on a dataset of images of pollen grains collected from museum specimens, mounted and imaged for training purposes. The models were assessed on various performance metrics, including accuracy, precision, recall, and F1-score across training, validation, and testing phases. Our results indicate that ResNet101 relatively outperformed other models, achieving a test accuracy of 99%, with equally high precision, recall, and F1-score. This study underscores the efficacy of transfer learning to produce models that can aid in identifications of difficult species. These models may aid conifer species classification and enhance pollen grain analysis, critical for ecological research and monitoring environmental changes.