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ORIGINAL RESEARCH article

Front. Artif. Intell.
Sec. Medicine and Public Health
Volume 7 - 2024 | doi: 10.3389/frai.2024.1487335

Predicting Clinical Trial Success for Clostridium difficile Infections Based on Preclinical Data

Provisionally accepted
  • University of California, Davis, Davis, United States

The final, formatted version of the article will be published soon.

    Preclinical models are ubiquitous and essential for drug discovery, yet our understanding of how well they translate to clinical outcomes is limited. In this study, we investigate the translational success of treatments for Clostridium difficile infection from animal models to human patients. Our analysis shows that only 36% of the preclinical and clinical experiment pairs result in translation success. Univariate analysis shows that the sustained response endpoint is correlated with translation failure (SRC=-0.20, p-value=1.53 x 10 -54 ), and explainability analysis of multi-variate random forest models shows that both sustained response endpoint and subject age are negative predictors of translation success. We have developed a recommendation system to help plan the right preclinical study given factors such as drug dosage, bacterial dosage, and preclinical/clinical endpoint. With an accuracy of 0.76 (F1 score of 0.71) and by using only 7 features (out of 68 total), the proposed system boosts translational efficiency by 25%. The method presented can extend to any disease and can serve as a preclinical to clinical translation decision support system to accelerate drug discovery and de-risk clinical outcomes.

    Keywords: machine learning, Translational research, Drug Discovery, Clinical Trial, Recommendation system

    Received: 27 Aug 2024; Accepted: 26 Sep 2024.

    Copyright: © 2024 Li, Youn, Millsop and Tagkopoulos. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

    * Correspondence: Ilias Tagkopoulos, University of California, Davis, Davis, United States

    Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.