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ORIGINAL RESEARCH article

Front. Aging Neurosci.
Sec. Alzheimer's Disease and Related Dementias
Volume 16 - 2024 | doi: 10.3389/fnagi.2024.1430290

Identification of cross-talk pathways and PANoptosis-related genes in periodontitis and Alzheimer's disease by bioinformatics analysis and machine learning

Provisionally accepted
Xiantao Chen Xiantao Chen Yifei Dai Yifei Dai Yushen Li Yushen Li Jiajun Xin Jiajun Xin Jiatong Zou Jiatong Zou Rui Wang Rui Wang Hao Zhang Hao Zhang Zhihui Liu Zhihui Liu *
  • Hospital of Stomatology, Jilin University, Changchun, China

The final, formatted version of the article will be published soon.

    Periodontitis (PD),a chronic inflammatory disease,is a serious threat to oral health and is one of the risk factors for Alzheimer's disease (AD).A growing body of evidence suggests that the two diseases are closely related.However,current studies have not provided a comprehensive understanding of the common genes and common mechanisms between PD and AD.This study aimed to screen the crosstalk genes of PD and AD and the potential relationship between cross-talk and PANoptosis-related genes.The relationship between core genes and immune cells will be analyzed to provide new targets for clinical treatment.The PD and AD datasets were downloaded from the GEO database and differential expression analysis was performed to obtain DEGs.Overlapping DEGs had cross-talk genes linking PD and OP,and PANoptosis-related genes were obtained from a literature review. Pearson coefficients were used to compute cross-talk and PANoptosis-related gene correlations in the PD and AD datasets.Cross-talk genes were obtained from the intersection of PD and AD-related genes,protein-protein interaction(PPI) networks were constructed and cross-talk genes were identified using the STRING database.The intersection of cross-talk and PANoptosis-related genes was defined as cross-talk-PANoptosis genes.Core genes were screened using ROC analysis and XGBoost.PPI subnetwork, gene-biological process, and gene-pathway networks were constructed based on the core genes.In addition,immune infiltration on the PD and AD datasets was analyzed using the CIBERSORT algorithm.366 cross-talk genes were overlapping between PD DEGs and AD DEGs.The intersection of cross-talk genes with 109 PANoptosis-related genes was defined as cross-talk-PANoptosis genes.ROC and XGBoost showed that MLKL, DCN, IL1B, and IL18 were more accurate than the other cross-talk-PANoptosis genes in predicting the disease,as well as better in overall characterization.GO and KEGG analyses showed that the four core genes were involved in immunity and inflammation in the organism.Immune infiltration analysis showed that B cells naive, Plasma cells,and T cells gamma delta were significantly differentially expressed in patients with PD and AD compared with the normal group.Finally,10 drugs associated with core genes were retrieved from the DGIDB database.This study reveals the joint mechanism between PD and AD associated with PANoptosis.Analyzing the four core genes and immune cells may provide new therapeutic directions for the pathogenesis of PD combined with AD.

    Keywords: Periodontitis, Alzheimer's disease, PANoptosis, common genes, Immune infiltration

    Received: 09 May 2024; Accepted: 08 Aug 2024.

    Copyright: © 2024 Chen, Dai, Li, Xin, Zou, Wang, Zhang and Liu. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

    * Correspondence: Zhihui Liu, Hospital of Stomatology, Jilin University, Changchun, China

    Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.