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ORIGINAL RESEARCH article

Front. Public Health, 03 February 2023
Sec. Infectious Diseases: Epidemiology and Prevention
This article is part of the Research Topic SARS-CoV-2 and Other Respiratory Viruses: Beyond the COVID-19 Pandemic View all 5 articles

Exploring the threshold for the start of respiratory syncytial virus infection epidemic season using sentinel surveillance data in Japan

\nTakeshi Miyama
Takeshi Miyama1*Kensaku KakimotoKensaku Kakimoto2Nobuhiro IritaniNobuhiro Iritani2Takayuki NishioTakayuki Nishio2Tomohiko Ukai,Tomohiko Ukai1,2Yuka SatsukiYuka Satsuki2Yasutaka YamanakaYasutaka Yamanaka2Yoko NishidaYoko Nishida2Ayumi ShintaniAyumi Shintani3Kazushi Motomura,Kazushi Motomura1,2
  • 1Epidemiology Section, Division of Public Health, Osaka Institute of Public Health, Osaka, Japan
  • 2Emergency Preparedness and Response Section, Division of Public Health, Osaka Institute of Public Health, Osaka, Japan
  • 3Department of Medical Statistics, Osaka Metropolitan University Graduate School of Medicine, Osaka, Japan

Introduction: An unusual seasonality of respiratory syncytial virus (RSV) infection in Japan is observed in recent years after 2017, becoming challenging to prepare for: a seasonal shift from autumn–winter to summer–autumn in 2017–2019, no major epidemic in 2020, and an unusually high number of cases reported in 2021.

Methods: To early detect the start-timing of epidemic season, we explored the reference threshold for the start-timing of the epidemic period based on the number of cases per sentinel (CPS, a widely used indicator in Japanese surveillance system), using a relative operating characteristic curve analysis (with the epidemic period defined by effective reproduction number).

Results: The reference values of Tokyo, Kanagawa, Osaka, and Aichi Prefectures were 0.41, 0.39, 0.42, and 0.24, respectively.

Discussion: The reference CPS value could be a valuable indicator for detecting the RSV epidemic and may contribute to the planned introduction of monoclonal antibody against RSV to prevent severe outcomes.

1. Introduction

Respiratory syncytial virus (RSV) infection can cause bronchiolitis and pneumonia. Infants, the elderly, and individuals with immunodeficiency and/or congenital heart disease are considered at high risk of developing severe RSV infection (1). As of this writing, there is still no licensed vaccine against RSV, although one licensed humanized monoclonal antibody against RSV F glycoprotein, palivizumab (Synagis, AstraZeneca K.K., Osaka, Japan), is currently available. For high-risk infants and children, including preterm infants and those with bronchopulmonary dysplasia, congenital heart disease, immunodeficiency, or Down syndrome, the cost of palivizumab treatment to prevent the development of severe conditions is covered by the national health insurance in Japan (50 mg palivizumab = 55,000 yen). The dosage regimen of palivizumab is 15 mg/kg of body weight, and it is administered monthly during an anticipated RSV epidemic, which is consistent with the manufacturer's recommendations. Since October 2011, the use of the RSV antigen detection assay is covered for infant outpatients and outpatients for whom palivizumab is indicated; previously, only inpatients were covered (2). The detection of RSV epidemic season is important to ensure appropriate timing of palivizumab administration to prevent the occurrence of serious RSV infections in high-risk infants and children, because it is given monthly during the RSV season (3).

RSV is reported under a pediatric sentinel surveillance system in the National Epidemiological Surveillance of Infectious Diseases (NESID) Program in Japan. A pediatric sentinel site is selected per 30,000–50,000 population, and ~3,000 hospitals and clinics are registered as pediatric sentinel sites. The NESID returns the information on the weekly number of reported cases and reported cases per sentinel (CPS, average number of reported cases per sentinel) to the public; thus, the number of CPS is widely recognized and used in medical institutions in Japan to evaluate the level of incidence. Reference CPS value is used for the start of influenza epidemic season, and an announcement is released by the Ministry of Health, Labor and Welfare when the CPS exceeds the reference value (although, to our knowledge, the evidence to obtain this value is not publicly available). However, the reference CPS value for the start of an RSV epidemic has not been officially defined by the NESID program, and they do not announce an epidemic alert regarding RSV infection, making it difficult to prepare for an epidemic. Moreover, while RSV infections were more often observed in winter before 2017, a seasonal shift was observed to summer–autumn in Japan in 2017–2019 (4), and unusual RSV dynamics were observed during the coronavirus disease (COVID-19) pandemic (57) (no major epidemic in 2020, and an unusually high number of cases reported in 2021). Therefore, the timing of the announcement or prediction of an epidemic is even more difficult. Hence, to overcome the current situation and efficiently prepare for an epidemic, defining the reference CPS threshold could be useful.

A previous study investigated the reference CPS values for the start of the epidemic period in Japan (8) using RSV incidence data between 2012 and 2017, assuming that the annual epidemic seasonality follows the sinusoidal curve cycle (i.e., an annual regular cycle). Considering the irregular RSV dynamic patterns observed in recent years, the sinusoidal curve cycle assumption may not be applicable for the RSV incidence after 2017 in Japan. Contrarily, the effective reproduction number, Rt, the average number of secondary cases produced by a single primary case at a specific time, t, in a given population (9), has been widely used to monitor trends in transmissions, regardless of the presence or absence of annual cyclicity. It has a threshold value of 1 to determine the phase of an epidemic. Monitoring Rt is valuable to evaluate the effects of interventions as seen in the COVID-19 pandemic (10, 11). It can also be used to evaluate the epidemic phase (whether it is in an ascending [i.e., Rt > 1] or decreasing [Rt < 1] phase) with high sensitivity even for the current RSV infection dynamics whose seasonality is irregular.

The relative operating characteristic (or receiver operating characteristic, ROC) curve analysis is used to determine the optimal threshold value of a diagnostic test that gives a dichotomous outcome (positive/negative test results) (12). For a test that reports the results on a continuous scale, the sensitivity and specificity can be calculated across all possible threshold values in comparison to gold standard status. The optimal threshold value is determined for the value where the sum of sensitivity and specificity is the maximum (see Youden index in Method section 2.3) (13). We considered that we can apply this method to detect the CPS threshold of RSV infection during epidemics. Each time datum of the CPS of RSV infection corresponds to the continuous scale test results above. We defined the epidemic period (assuming it is the true status of the epidemic period or gold standard) using Rt in the current study because Rt defines the ascending phase of the epidemic with high sensitivity (i.e., Rt can detect the start of epidemic seasons early).

The objective of this study is to determine the CPS threshold of the RSV infection epidemic season using ROC curve analysis. Since seasonality varies depending on the region (2) and region-dependent reference values are required (14), we explored region-dependent CPS thresholds of the epidemic season.

2. Materials and methods

2.1. Data

The weekly number of reported RSV infection cases and CPS were retrieved from the Infectious Diseases Weekly Report (15). The report is based on laboratory diagnosis using enzyme immunoassays to detect the RSV antigen and/or nucleic acid amplification tests for the corresponding RSV gene from nasal/throat swabs specimens. Ten prefectures whose population size was within the top 10 largest as of 2020 (Tokyo, Kanagawa, Osaka, Aichi, Saitama, Chiba, Hyogo, Hokkaido, Fukuoka, and Shizuoka) (16) were selected, and data between 2011 and 2019 were used. We selected these prefectures because the number of reported cases is expected to be large, which leads to a stable confidence interval of Rt (i.e., the interval is not too large). The study period was selected because of the considerable reporting rate change since October 2011 (2). The data used in this study does not include any personal information and they are publicly available; thus, ethical approval and consent are not required.

2.2. Epidemic period definition

In the current study, to determine the epidemic period of RSV infection as a true epidemic status (gold standard) for ROC curve analysis, we used the Rt, which quantifies the potential for epidemic spread: if Rt is larger than 1, the infection would spread, whereas if Rt is < 1, the infection would die out. We define the start of the epidemic period as the time when the lower bound of 95% confidence interval (CI) is >1, considering its uncertainty (Figure 1, arrow head). Then, we obtained the number of cases at the start of the epidemic period (Figure 1, dotted arrow), and the end of epidemic period as the time when the number of cases became below that at the start of the epidemic (17, 18) (or that at the start of the epidemic of the next year in case the number of cases does not became below that at the start of the epidemic) (Figure 1, solid arrow). We assumed this epidemic period as the gold standard for an epidemic detection test that uses the number of CPS (see section 2.3 below).

FIGURE 1
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Figure 1. Definition of the epidemic period using the effective reproduction number. The start of the epidemic period is the time when the lower bound of the 95% CI became >1 (arrow head). The epidemic threshold of the year is the numbers of cases at the start of the epidemic period (dotted arrow). The end of the epidemic period is time when the number of cases is below the epidemic threshold (solid arrow). The bar graph (blue) shows the weekly CPS. The effective reproduction number is shown with 95% CI band (pink shade) and its lower bound (red line). Green rectangle shade shows the epidemic period. Rt, effective reproduction number; CPS, case per sentinel.

Rt can be estimated by the ratio of the number of new infections generated at a specific time t, I(t), to the total infectiousness of the infected individuals at time t, s=1tI(t-s)ω(s), as below

Rt=I(t)s=1tI(ts)ω(s)

where ω(.) is the probability function of an infectivity profile (9). Rt was calculated using an R package, EpiEstim (9), over a 1-week time window. For the infectivity profile, ω(.), a serial interval (the time between the symptom onset of a primary case and that of secondary case) was used. The mean and standard deviation of the serial interval for RSV infection was assumed to be 7.5 and 2.1 days, respectively (19). Since the above Rt estimation uses I(.) and ω(.) which are on a daily scale, data on the daily number of cases are required. We derived the daily data of RSV cases by fitting the cumulative number of weekly data to smoothing spline (20, 21). Then, the daily incidence was obtained by monitoring the daily difference of the estimated smoothing spline. The smoothing spline was estimated by the function “smooth.spline” in splines package in R (22) to minimize the penalized least squares using the generalized cross-validation criterion. To make the estimated values as count data, they were rounded to the nearest integer. When the calculated number of daily cases was zero, it was replaced with 1 to avoid an extreme fluctuation of Rt estimation when the number of cases is small.

2.3. Exploring the reference value for the start of epidemic using the number of reported cases per sentinel

Since the CPS in the NESID system in Japan has been widely used, rather than Rt, among health care workers and medical institutions, the reference value based on CPS to detect the start of the epidemic period could be useful (2, 8). Evaluating epidemic periods using the CPS threshold (CPS method) is relatively simple: it is positive (i.e., in an epidemic period) if the CPS at a certain period is larger or equal to the threshold value, and it is negative (i.e., not in an epidemic period) if the CPS at a certain period is smaller than the threshold. Now, we need to identify the cut-off value of the CPS that could detect the epidemic period defined in section 2.2 (the gold standard) with high sensitivity and specificity for. To do so, we performed an ROC curve analysis and plot an ROC curve by calculating the sensitivity and specificity against the gold standard for candidate CPS cut-off values of the CPS method. We determined the most plausible cut-off value as the reference CPS value for the start of epidemic, maximizing the Youden index (13). Youden index is calculated as follows:

Youden index=sensitivity+specificity1.

The reference values were calculated for each prefecture using the incidence data in 2012–2019, 2012–2015, and 2016–2019 to show period-dependency.

3. Results

3.1. Epidemic period defined by the effective reproduction number

The epidemic curves of Tokyo, Kanagawa, Osaka, and Aichi are shown in Figure 2 with Rt and defined epidemic periods. The epidemic periods, which are defined using Rt as the gold standard for the ROC curve analysis (Methods, section 2.2), are shown in green. The epidemic periods captured the waves of the epidemic curves where the CPS values were high in general (e.g., Figure 2C in Osaka). In some occasions, short periods with a small surge before and after the main waves (e.g., Figure 2A, head arrows in 2012 and 2019) were defined as epidemics. The epidemic curve, Rt, and epidemic periods of the other prefectures are shown in Supplementary Figure 1.

FIGURE 2
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Figure 2. Number of cases per sentinel (CPS) of respiratory syncytial virus infection from 2012 to 2019 with the effective reproduction number. (A–D) Tokyo (A), Kanagawa (B), Osaka (C), and Aichi (D) Prefectures. The bar graph (blue) shows weekly CPS. The effective reproduction number is shown with 95% CI band (pink shade) and its lower bound (red line). The green rectangle shade shows the epidemic period (please refer to the main text and Figure 1 for the definition of the epidemic period). By this definition, small surges may be included (arrow heads).

3.2. Reference value for the start of the epidemic period by the number of reported cases per sentinel

From the results of the ROC curve analysis, the reference CPS values for the prefectures whose population size is within the top 10 largest in Japan in 2012–2019, 2012–2015, and 2016–2019 ranged from 0.26 to 0.74, from 0.16 to 0.97, and from 0.24 to 0.81, respectively (Table 1). The reference values of the prefectures whose population size is within the top 4 largest (Tokyo, Kanagawa, Osaka, and Aichi) in 2016–2019 were 0.41, 0.39, 0.42, and 0.24, respectively. The reference values varied among prefectures. For example, in 2012–2019, the reference values in the studied prefectures, except Hokkaido and Fukuoka, were between ~0.3 and 0.5, whereas Hokkaido and Fukuoka had the higher reference value between 0.6 and 0.7, as compared to the other prefectures. The reference values obtained from 2016 to 2019 were generally higher than those from 2012–2015 (except for Aichi, Hyogo, and Hokkaido).

TABLE 1
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Table 1. Reference values using the number of cases per sentinel for the start of the epidemic season.

The ROC curves for the prefecture- and period-dependent analyses are shown in Supplementary Figures 24.

4. Discussion

We conducted an ROC curve analysis to determine the reference value of CPS that plausibly determines the start of an RSV epidemic, which is required for a planned administration of palivizumab to high-risk infants and the elderly. From the current study, we found that the reference values for prefectures whose population size is within the top 10 largest in Japan were all < 1, showing ranges of 0.26–0.74, 0.16–0.97, and 0.24–0.81in 2012–2019, 2012–2015, and 2016–2019, respectively.

Another investigation on the start of the epidemic period in Japan (8) showed similar result as our study using the RSV incidence data between 2012 and 2017, reporting that the reference CPS value ranged from 0.26 to 0.61 for the 10 prefectures. The previous study used the sinusoidal curve cycle to capture the RSV epidemic seasonality, which may not be able to capture the recent RSV seasonality change (4, 8), especially during the COVID-19 pandemic period (57). However, the method to detect the start of the epidemic using the effective reproduction number, which was applied in the current study, is not affected by the cyclicity change. Moreover, this may be applicable for other infectious diseases with annual seasonality or other surveillance systems used in other countries. Another method to determine epidemic periods is the moving epidemic method (MEM), which is used for infectious diseases such as influenza (23) and RSV (24) and is not influenced by seasonality. The MEM algorithm identifies the epidemic periods where the number of cases is high, while Rt identifies the increase (change) in the number of cases. The characteristics of these two methods are different, and further research is needed to evaluate how they influence the reference threshold.

The reference CPS values for the start of the epidemic period were not consistent among prefectures. The reference values of Hokkaido and Fukuoka in 2012–2019 were 0.6 and 0.7, respectively, which were higher than those of the other prefectures (0.3–0.5). This was because the incidence at baseline (non-epidemic period) was relatively high in Hokkaido and Fukuoka (i.e., the number of CPS in the non-green-shaded periods in Supplementary Figures 1D, E was higher than the other regions). If the baseline incidence level is high, the incidence level when the Rt becomes >1 will consistently be high, since the reproduction number is the ratio between the number of primary and secondary cases. As the reference CPS values in this study varied among prefectures and the epidemic season in each region is slightly different, a regional-level reference CPS value should be obtained when applying our method (if the national-level CPS threshold is obtained, the sensitivity of the CPS method could be lower). Moreover, the reference CPS value for the start of the epidemic period varied depending on the time. The reference values in 2016–2019 were in general slightly higher than those in 2012–2015. This is because the baseline incidence level has gradually increased from 2012 to 2019. The baseline incidence might be influenced by factors such as the reporting rate, scale of RSV infection sentinel sites selected in each prefecture, and balance of the number of susceptible and transmissibility of the disease. The specific reason for the region- or time-dependency of the incidence level at baseline is unclear; however, annual or 2–3-year updates by region could be a method to deal with the issue of time-dependency except in cases wherein an irregular season is observed such as during the COVID pandemic.

This study includes several limitations. First, it is difficult to define this epidemic period using the lower bound of Rt 95% CI for regions where the number of reported cases is small, because the 95% CI of Rt estimation would be too large. In the 13 prefectures (among the 47 prefectures in Japan), which were not included in the current study area, all epidemic periods could not be detected using this method (data are not shown). However, the target population of the current study (the 10 prefectures) did not have such a problem during the epidemic period estimation; thus, the CPS reference values for the start of the epidemic period estimated by the current study should be reasonable. A larger-level region may be used to estimate Rt for prefectures with a small number of reported cases. Second, the CPS threshold that was obtained in this study does not capture the epidemic period perfectly. Whether the sensitivity and specificity of the CPS reference values are acceptable depends on the users' context. However, we consider that they are an important metric as the index of CPS is easy to understand and commonly used to announce the current situation of RSV dynamics.

In conclusion, we estimated the CPS reference values that indicate the start of an RSV epidemic for prefectures whose population size is within the top 10 largest, which ranged from 0.16 to 0.97 in 2012–2015, and from 0.24 to 0.81 in 2016–2019 (e.g., Tokyo, 0.41; Kanagawa, 0.39; Osaka, 0.42 in 2016–2019). The reference CPS values should be estimated by regions and periods, considering their variations, and should be updated regularly. The reference CPS value can be a valuable indicator to detect an RSV infection epidemic season at the early stage, and may contribute to the planned administration of palivizumab, a monoclonal antibody against RSV, to prevent the severe outcome of RSV infections.

Data availability statement

Publicly available datasets were analyzed in this study. This data can be found here: https://www.niid.go.jp/niid/en/idwr-e.html.

Ethics statement

Ethical review and approval was not required for the study on human participants in accordance with the local legislation and institutional requirements. Written informed consent for participation was not required for this study in accordance with the national legislation and the institutional requirements.

Author contributions

TM, NI, TU, KK, and KM conceptualized the study design. TM, TN, YN, YS, and YY collected the data. TM and AS analyzed the data. TM drafted the manuscript. All authors gave comments on the earlier versions of the manuscript, edited the manuscript, and approved the final version.

Funding

This work was supported by the Japan Society for the Promotion of Science (JSPS) Grant-in-Aid for Scientific Research [KAKENHI JP19K24219 and JP22K17410 to TM]. The funder had no role in the analysis and interpretation of this study.

Acknowledgments

We thank Osaka Local Infectious Disease Surveillance Center and Osaka Analysis Committee of Infectious Disease Surveillance.

Conflict of interest

TM reports a research grant from the Japan Society for the Promotion of Science (JSPS).

The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Publisher's note

All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.

Supplementary material

The Supplementary Material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/fpubh.2023.1062726/full#supplementary-material

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Keywords: epidemic threshold, early epidemic detection, effective reproduction number, epidemiology, Japan, prevention, relative operating characteristic curve analysis, respiratory syncytial virus (RSV)

Citation: Miyama T, Kakimoto K, Iritani N, Nishio T, Ukai T, Satsuki Y, Yamanaka Y, Nishida Y, Shintani A and Motomura K (2023) Exploring the threshold for the start of respiratory syncytial virus infection epidemic season using sentinel surveillance data in Japan. Front. Public Health 11:1062726. doi: 10.3389/fpubh.2023.1062726

Received: 07 October 2022; Accepted: 17 January 2023;
Published: 03 February 2023.

Edited by:

Chen Zhang, University of Rochester, United States

Reviewed by:

Charles J. Vukotich Jr, University of Pittsburgh, United States
Cyril Barbezange, Sciensano, Belgium
Nuria Torner, University of Barcelona, Spain

Copyright © 2023 Miyama, Kakimoto, Iritani, Nishio, Ukai, Satsuki, Yamanaka, Nishida, Shintani and Motomura. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

*Correspondence: Takeshi Miyama, yes miyama@iph.osaka.jp

Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.