Steve F. Perry
Yihang K. Pan
Kathleen M. Gilmour- Department of Biology, University of Ottawa, Ottawa, ON, Canada
Adjustments of ventilation in fishes to regulate the volume of water flowing over the gills are critically important responses to match branchial gas transfer with metabolic needs and to defend homeostasis during environmental fluctuations in O2 and/or CO2 levels. In this focused review, we discuss the control and consequences of ventilatory adjustments in fish, briefly summarizing ventilatory responses to hypoxia and hypercapnia before describing the current state of knowledge of the chemoreceptor cells and molecular mechanisms involved in sensing O2 and CO2. We emphasize, where possible, insights gained from studies on early developmental stages. In particular, zebrafish (Danio rerio) larvae have emerged as an important model for investigating the molecular mechanisms of O2 and CO2 chemosensing as well as the central integration of chemosensory information. Their value stems, in part, from their amenability to genetic manipulation, which enables the creation of loss-of-function mutants, optogenetic manipulation, and the production of transgenic fish with specific genes linked to fluorescent reporters or biosensors.
1 Introduction
Arguably, the most thorough review of the control of breathing in fishes was published in 1986 in the Handbook of Physiology (Shelton et al., 1986) as part of an exhaustive tome that covered the regulation of ventilation in all ectothermic vertebrates. In the ensuing years, numerous reviews synthesizing aspects of the control of breathing in fishes have appeared (Burleson et al., 1992; Glass, 1992; Gilmour, 2001; Burleson and Milsom, 2003; Gilmour and Perry, 2007; Sundin et al., 2007; Perry et al., 2009a; Perry et al., 2009b; Perry and Gilmour, 2010; Perry, 2011; Perry and Abdallah, 2012; Jonz et al., 2015a; Perry et al., 2016; Perry and Tzaneva, 2016; Tresguerres et al., 2019; Pan and Perry, 2020), including a recent sequel to the 1986 Handbook classic (Milsom et al., 2022). The topics covered in these reviews span all levels of respiratory control from chemoreception of the respiratory gases (O2, CO2 and ammonia) and central integration of afferent sensory input to efferent motor output to the muscles controlling water- or air-breathing. Additionally, several of these reviews include sections on the physiological significance of ventilatory adjustments associated with environmental change or increased physical activity (Perry et al., 2009b; Perry, 2011; Milsom et al., 2022). Thus, one might reasonably question the need for yet another review of piscine respiratory control. Frankly, there is probably no need for another comprehensive synthesis. However, in light of recent findings, particularly pertaining to early developmental stages, several emerging themes merit discussion in a brief and focused review. These themes include the ontogeny of chemoreception and the associated respiratory reflexes as well as the molecular and cellular mechanisms underlying the sensing of the two well-studied respiratory gases, O2 and CO2.
The current review will focus exclusively on ventilation in water-breathing fishes and highlight research on zebrafish (Danio rerio) with a specific focus on the early stages of development. The emphasis on zebrafish reflects recent advances in transgenic and loss-of-function (e.g., knockdown, knockout) approaches (Zimmer et al., 2019) that were developed to study the control of breathing in this model species. The review begins with a brief discussion of the ventilatory responses associated with environmental changes in O2 and CO2, which is followed by more detailed descriptions of the mechanisms underlying the sensing of these respiratory gases. In a final section, we propose areas for future studies that would use genetic techniques amenable to larval zebrafish.
2 Ventilatory adjustments to environmental changes in respiratory gases
The volume of water ventilating the gills is a key determinant of O2 consumption, hence aerobic metabolic rate. Thus, adjustments to ventilation (in concert with cardiac changes) are used to match O2 consumption with metabolic needs. To modify O2 uptake rates independently of metabolic rate, ventilation volumes also are controlled by environmental cues linked to modulation of chemoreceptors. Although less well-studied, the excretion rates of CO2 and NH3 (water-breathers) also are governed, in part, by ventilation volumes. Over a relatively narrow range of ventilation volumes (∼60–150 mL min−1), Iwama et al. (1987) reported a significant correlation between O2 uptake and CO2 excretion yielding a slope of 1.0. The effects of hyperventilation on branchial ammonia excretion are complex and vary according to the prevailing diffusion limitations (Randall and Ip, 2006). Indeed, under so-called resting conditions, the rate of ammonia excretion was unaffected by water flow (Eom et al., 2020). However, under conditions of reduced diffusion limitations (e.g. in fish experiencing elevated plasma ammonia levels and increased expression of Rh ammonia channels), there was a clear correlation between ventilation and ammonia excretion. Owing to the limited data available on mechanisms of ammonia sensing, the following discussion focuses on the ventilatory effects of changes in environmental O2 and CO2 levels. However, readers interested in the ventilatory effects of the third respiratory gas, NH3, are directed to the following publications (Zhang and Wood, 2009; Zhang et al., 2011; Zhang et al., 2013; De Boeck and Wood, 2015; Zhang et al., 2015; Eom et al., 2019; Eom et al., 2020; Eom and Wood, 2021; Porteus et al., 2021).
2.1 Environmental O2 levels
Numerous aquatic habitats vary spatially and temporally in levels of dissolved O2, ranging from hypoxia [a reduction in O2 partial pressure (PO2) below that of air-equilibrated water] to hyperoxia (an increase in PO2). Although such gradients in ambient PO2 have existed through “geological time” (Diaz, 2001), their severity and zones of occurrence are increasing steadily owing to human activities. In response to hyperoxia, fish lower ventilation (hypoventilate) (Wood and Jackson, 1980; Heisler et al., 1988; Kinkead and Perry, 1991; Reid et al., 2005; Vulesevic et al., 2006; Tzaneva and Perry, 2014; Porteus et al., 2015; Porteus et al., 2021). Assuming that the cost of gill ventilation is a significant component of the overall energy budget (Jones and Schwarzfeld, 1974; Steffensen and Lomholt, 1983), hyperoxic hypoventilation may confer some energetic savings. The associated reduction in gas transfer efficiency is of no consequence to blood O2 transport because the arterial PO2 will remain well in excess of that needed for full saturation of haemoglobin. However, the retention of CO2 associated with hypoventilation elicits respiratory acidosis (a lowering of pH caused by an increase in PCO2) (Wood and Jackson, 1980), an obvious detrimental consequence of hyperoxia exposure that could impact fish health in commercial aquaculture settings that add supplemental O2 to the water (Zimmer and Perry, 2022).
The effects of hypoxia on ventilation (Randall and Shelton, 1963) have received far more attention than those of hyperoxia (Wood and Jackson, 1980). The reader is referred to several extensive reviews that summarise the ventilatory effects linked to hypoxia (Randall, 1982; Shelton et al., 1986; Burleson et al., 1992; Gilmour, 2001; Perry and Gilmour, 2002; Gilmour and Perry, 2007; Perry et al., 2009b; Milsom, 2012). In brief, fish hyperventilate during hypoxia by increasing respiratory frequency (fV) and/or amplitude (VAMP), depending on species. Collectively, these changes in breathing are termed the hypoxic ventilatory response (HVR). Hyperventilation enhances oxygenation of the blood flowing through the gills and therefore serves to minimize the extent of the reduction in arterial PO2 (PaO2), and hence haemoglobin O2 saturation, that is an inevitable consequence of ambient hypoxia (e.g., Holeton and Randall, 1967). The vast majority of studies that have examined the piscine HVR were performed on adults. In recent years, however, the HVR during early development has received renewed and increasing attention. Studies on zebrafish, in particular, have provided insight into the maturation of the HVR and its developmental plasticity while shedding light on the physiological significance of the HVR in larvae lacking fully developed gills. Given its underdeveloped gills, a high surface-to-volume ratio, thin integument and immature autonomic nervous system, the larva should not be considered a miniature version of the adult although some elements of the HVR are conserved.
2.2 Ontogeny of the hypoxic ventilatory response
The scarcity of studies on early life stages may reflect the generally held view that the developing gills of larvae do not contribute significantly to whole body O2 uptake until they have developed an adult-like morphology (Rombough, 1988; Rombough, 2007). In zebrafish (Rombough, 2002) and rainbow trout (Oncorhynchus mykiss) (Fu et al., 2010), the gills do not assume a predominant role in O2 uptake until 14 and 27 days post-hatch, respectively. However, despite the apparently minor role of the gills in O2 uptake during early stages of development, zebrafish (Jonz and Nurse, 2005) and rainbow trout (Holeton, 1971) exhibit an obvious HVR as early as 3 and 1 day post fertilization (dpf), respectively. Similar hyperventilatory responses before gill maturation were reported for Arctic char (Salvelinus alpinus; McDonald and McMahon, 1977) and gar (Atractosteus tropicus; Burggren et al., 2016) larvae, although Atlantic salmon (Salmo salar) larvae at 50 dpf do not exhibit a HVR (Polymeropoulos et al., 2014).
Developing fishes ventilate their buccal and opercular cavities with increasing regularity as they mature. Additionally, they possess a finely tuned HVR before the gills are fully formed, a time when the skin is thought to be the dominant site of O2 uptake. Thus, the physiological significance of the HVR in larvae prior to gill development is not immediately obvious. One possibility is that this seemingly precocious HVR may be present to ensure that O2-sensing pathways are operational by the time the larvae become dependent on branchial gas transfer (Jonz and Nurse, 2005). It is also plausible that O2 extraction from the buccal cavity, while not significant during normoxia, assumes an increasingly important role in maintaining routine O2 consumption during hypoxia. That is while the gills may not yet exhibit the extensive lamellae that confer large surfaces for gas transfer, the vascularized primordial filaments, lamellar buds and the lining of the buccal cavity, itself, are potential gas transfer surfaces. In support of this idea, the critical PO2 (Pcrit; the PO2 of the water during progressive hypoxia at which MO2 can no longer be maintained) was increased in 7 dpf zebrafish larvae prevented from ventilating their buccal cavity (Pan et al., 2019). Clearly despite the absence of a fully developed gill, the HVR in zebrafish larvae older than 7 dpf benefits O2 uptake during hypoxia. It is important to note that the elevated ventilation during hypoxia not only raises water flow through the buccal and opercular cavities, but also increases water flow across cutaneous surfaces. This increase in convection over the skin associated with hyperventilation and increased fin movements (see below) likely increases the trans-cutaneous O2 diffusion gradient while reducing physical boundary layers; both effects are expected to increase O2 uptake across the skin during hypoxia.
The ventilatory responses of larval fish to hypoxia are temporally complex and influenced by age and the severity of the hypoxia (Turesson et al., 2006; Mandic et al., 2019; Pan et al., 2019). For example, the HVR of larval zebrafish exposed to a PO2 of 55 mmHg was transient, lasting only 5 min, at 4 dpf, but persisting for the duration of a 30 min exposure at 10 dpf (Pan et al., 2019). Thus, the HVR might easily go undetected if ventilation was measured only at a limited number of time points after beginning hypoxia. The overall HVR consists of several phases even when the hyperventilation persists. The initial response is a rapid increase in fV that typically peaks within 5 min of the onset of hypoxia (Mandic et al., 2019; Pan et al., 2019). The next phase of the HVR consists of a decline in fV to normoxic values or to a level that is intermediate between resting and peak fV. The likelihood of fV remaining elevated increases with age and the severity of hypoxia (Mandic et al., 2019; Pan et al., 2019). Similar to adults, the period of increased ventilation in larvae <15 dpf is accompanied by stable O2 consumption (Mandic et al., 2020). The limited data on larvae indicate that the increased fV begins to decline prior to Pcrit whereas in adults, the peak HVR is sustained slightly beyond Pcrit (Mandic et al., 2020). Future studies may benefit from longer exposures (e.g., days to weeks), which would enable comparisons of hypoxic acclimation in larvae with data from adults (Vulesevic et al., 2006).
2.2.1 Synchrony of buccal ventilation and fin movements
In early larval stages, breathing is infrequent and irregular (Holeton, 1971; McDonald and McMahon, 1977; Jonz and Nurse, 2005). For example, breathing movements in zebrafish larvae post hatch are rare under normoxic conditions; the HVR is first observed at 3 dpf but even during hypoxia, the buccal movements are irregular until about 8 dpf (Jonz and Nurse, 2005). Qualitatively similar results were observed for rainbow trout and Arctic char, although the transition from irregular to regular breathing movements occurred over a longer time course, corresponding with their slower rate of development (Holeton, 1971; McDonald and McMahon, 1977). During these early developmental stages, the buccal/opercular movements are synchronized with rapid pectoral fin movements, a behaviour presumed to aid gas transfer across the skin by increasing water flow over the body (Rombough, 1988). The synchrony between gill ventilation and pectoral fin movements during hypoxia in zebrafish larvae was studied by Zimmer et al. (Zimmer et al., 2020). Their data demonstrated that the synchronous movements, which are obvious at 4 dpf, are absent by 21 dpf. It was suggested that the loss of synchrony reflects the transition from reliance on cutaneous gas transfer to reliance on branchial gas transfer. To our knowledge, the sensory mechanisms underlying the fin movements during hypoxia have not been investigated (see Zimmer et al., 2020).
2.2.2 Developmental plasticity
The ventilatory responses of adult fish to hypoxia can be modified by the status of the environment during early development. For example, zebrafish embryos treated with hyperoxic water for 7 days (0–7 dpf) exhibited a blunted HVR when exposed as adults to acute hypoxia (Vulesevic and Perry, 2006). However, there was no effect of subjecting larvae to hypoxia or hypercapnia on the responses of adult fish to hypoxia. The plasticity exhibited by zebrafish exposed to hyperoxia during early development (Vulesevic and Perry, 2006) agrees with the results of studies on mammals showing that exposure to hyperoxia during a critical prenatal period may permanently impair the phrenic response to hypoxia (Ling et al., 1997; Donnelly, 2000; Carroll, 2003). The mechanisms responsible for blunting of the HVR in adult zebrafish subjected to hyperoxia as larvae are unknown but as in mammals, may reflect changes to the O2 chemoreceptors or afferent neurons (Donnelly, 2000).
Not only can the HVR be shaped by developmental plasticity (Vulesevic and Perry, 2006), but it is possible that the HVR is modified epigenetically in offspring of parents that were exposed to hypoxia. Notably, zebrafish larvae of one (male) or both parents exposed to hypoxia exhibited significant differences in their hypoxia tolerance compared to offspring of parents that had never experienced hypoxia (Ho and Burggren, 2012; Ragsdale et al., 2022). Although no breathing data were obtained (Ho and Burggren, 2012; Ragsdale et al., 2022), it is tempting to speculate that the transgenerational changes in hypoxia tolerance are related to changes in the HVR. Assessing possible epigenetic effects on the HVR is an area that warrants further attention.
2.2.3 Aquatic surface respiration
In naturally hypoxic aquatic habitats, a thin layer of water at the surface tends to be enriched with O2 relative to the bulk water (Burggren, 1982). Fish exploit this microenvironment with a behavioural adaptation termed aquatic surface respiration (ASR) (Kramer and Mehegan, 1981). During ASR, fish rise to the surface and skim the uppermost layer to ventilate their gills with O2-enriched water (Gee et al., 1978; Kramer and McClure, 1982). Aquatic surface respiration has been studied almost exclusively in adult fishes (Chapman and McKenzie, 2009) where it has been shown to increase blood oxygenation during severe hypoxia (Burggren, 1982) as well as survival (Kramer and McClure, 1982). To our knowledge, ASR has been examined rarely in juveniles (Weber and Kramer, 1983; Sloman et al., 2008) and in larvae of a single species, zebrafish (Abdallah et al., 2015b; Mandic et al., 2022), in which ASR increased as the severity of hypoxia was increased. In zebrafish, the age of onset of ASR during acute hypoxia is 5 dpf (Abdallah et al., 2015b). At earlier developmental stages, ASR may be constrained by the lack of swimbladder inflation that is needed to control buoyancy (Abdallah et al., 2015b). Similar to adult zebrafish, ASR improves survival during severe hypoxia in larvae older than 5 dpf (Mandic et al., 2022). Indeed, when exposed to a level of hypoxia of 16 mmHg, the survival of larvae (>5 dpf) performing ASR was similar to that of normoxic larvae at close to 100%. Larvae (>5 dpf) spent approximately 30% of their time engaged in ASR, which was similar to the situation in adults experiencing the same level of hypoxia (16 mmHg) (Mandic et al., 2022). The energetic costs associated with extended periods of ASR in zebrafish larvae are unknown but are likely to be low given their state of neutral buoyancy (Lindsey et al., 2010). Conversely, longer time spent at the surface is likely to increase the risk of predation.
2.3 Environmental CO2 levels
Elevated levels of dissolved CO2 in aquatic habitats (interchangeably termed hypercapnia or hypercarbia) arise naturally from biological respiration and microbial decomposition of organic matter, especially in tropical waters with high biomass including the so-called “blackwaters” of the Amazon basin (Furch and Junk, 1997; Rasera et al., 2013). Additionally, eutrophication is a major cause of hypercapnia that is worsening globally owing to pollution, the warming of aquatic environments and increasing levels of atmospheric CO2.
As with hypoxia, most studies that assessed the ventilatory effects of hypercapnia were conducted on adult fish. Although PCO2 thresholds of onset vary widely, a ubiquitous response to hypercapnia is hyperventilation (Gilmour, 2001; Gilmour and Perry, 2007; Perry et al., 2009a; Milsom, 2012; Perry and Abdallah, 2012; Tresguerres et al., 2019) that, in contrast to hypoxia, typically results from increases in VAMP rather than fV (Milsom et al., 2022). The regulation of ventilation by ambient CO2 or associated changes in the internal acid-base status, while important, is secondary to the dominant role of O2 status in the control of breathing in fishes. In adult zebrafish, episodic breathing is a relatively common occurrence under resting conditions (e.g., 20% of individuals examined) (Vulesevic et al., 2006). Unlike hypoxia, which alters breathing patterns from episodic to continuous, episodic breathing is unchanged by hypercapnia (Vulesevic et al., 2006; Milsom et al., 2022). Currently, there is no explanation for the different patterns of ventilatory responses to hypoxia and hypercapnia, which are presumably to be triggered by the same chemoreceptors (see below).
2.4 Ontogeny of the hypercapnic ventilatory response
Little is known about the respiratory reflexes associated with hypercapnia in developing fish. Indeed, the only species that has been studied during larval stages is zebrafish. Unlike adults, which increase ventilation during hypercapnia exclusively by adjusting VAMP (see above), larval zebrafish hyperventilate by markedly increasing fV when exposed to elevated ambient CO2 (Kunert et al., 2022). To date, there are no reliable methods to measure VAMP in zebrafish larvae; thus, it is conceivable that VAMP increases in concert with changes in fV. Regardless, it would be useful to determine the time of development when the ventilatory response to hypercapnia shifts from altering fV to altering VAMP. As in adult fishes, the breathing response of zebrafish larvae to hypercapnia is caused specifically by an increase in ambient PCO2 rather than the associated acidification of the water (Kunert et al., 2022). The benefit, if any, of the hypercapnic hyperventilation in larvae, which occurs concurrently with tachycardia (Miller et al., 2014), is unknown.
3 Sensory and molecular mechanisms of chemoreception
The reflex ventilatory responses to hypoxia and hypercapnia described above are thought to be triggered by the activation of peripheral chemoreceptors. However, much remains to be learned about the molecular mechanisms of gas sensing as well as the afferent sensory pathways and neural circuitry that process chemosensory signals. As with reflex ventilatory responses, most studies of sensory mechanisms have focused on adult fish or chemosensory cells isolated from adult fish. It is only recently that the power of larval zebrafish as a model for investigating chemoreceptor function in vivo has begun to be realized. Below, the evidence that neuroepithelial cells (NECs) serve as O2 and CO2 chemoreceptors is briefly surveyed and our current understanding of the molecular mechanisms of chemoreception is discussed.
3.1 Hypoxia
3.1.1 Peripheral chemoreceptors
The O2 chemoreceptors in fishes are believed to be NECs that were first described by Dunel-Erb et al. (1982). In adult fish, they are found on the tips of gill filaments and in larvae, they are located on the skin prior to gill maturation (Jonz and Nurse, 2006; Coccimiglio and Jonz, 2012). NECs also may be present on cutaneous surfaces in adults of some species including the mangrove rivulus (Kryptolebias marmoratus) (Regan et al., 2011; Rossi et al., 2020) and giant mudskipper (Periophthalmodon schlosseri) (Zaccone et al., 2017).
Gill NECs are characterized by the presence of dense-cored vesicles containing serotonin (5-HT) and their innervation is derived from a plexus of nerve fibres (Dunel-Erb et al., 1982; Bailly et al., 1989; Bailly et al., 1992; Jonz and Nurse, 2003). Initial suggestions of gill NECs being O2 chemoreceptors were based on their morphology, location and innervation patterns (Dunel-Erb et al., 1982; Bailly et al., 1992; Jonz and Nurse, 2003; Bailly, 2009). Substantial indirect evidence supports a role for the NECs as peripheral O2 chemoreceptors, largely based on their morphological changes (hypertrophy, hyperplasia and increased numbers of neuron-like processes) during exposure to prolonged hypoxia (Jonz et al., 2004; Burleson et al., 2006; Regan et al., 2011; Shakarchi et al., 2013; Rossi et al., 2020; Pan et al., 2021a). Direct evidence that gill NECs are O2 sensitive was provided by whole-cell patch-clamp recordings in vitro from NECs isolated from adult gill filaments. Specifically, patch clamp experiments demonstrated hypoxia-induced membrane depolarization in isolated gill NECs under current-clamp conditions in zebrafish (Jonz et al., 2004) and channel catfish (Ictalurus punctatus) (Burleson et al., 2006). Additional direct evidence was provided by measuring intracellular [Ca2+] ([Ca2+]i) and synaptic vesicle activity in isolated goldfish (Carassius auratus) NECs (Zachar et al., 2017).
There is less evidence supporting the notion that skin NECs are O2 chemoreceptors. In zebrafish, skin NECs exhibiting innervation are evident in embryos at 1 dpf, before the onset of behavioral responses to hypoxia (Coccimiglio and Jonz, 2012). A population of skin NECs also expresses synaptic vesicle protein, suggesting a capacity for the secretion of neurotransmitters (Coccimiglio and Jonz, 2012). However, all evidence of hypoxia sensitivity in skin NECs is indirect, based on their increasing density and/or size under hypoxic conditions (Regan et al., 2011; Coccimiglio and Jonz, 2012; Rossi et al., 2020), or elimination of the HVR following their partial chemical denervation (Coccimiglio and Jonz, 2012). In contrast, however, NEC development in larval mangrove rivulus is largely unaffected by environmental O2 levels (Cochrane et al., 2021). Thus, the current evidence supports hypoxia sensitivity of isolated gill NECs in vitro, whereas direct evidence for hypoxia sensitivity in skin NECs is lacking. Additional research, especially in vivo, is required to establish both gill and skin NECs as piscine O2 chemoreceptors.
3.1.2 Molecular mechanisms and pathways of O2 sensing
The sensing of O2 begins with the detection of PO2 changes by an O2 sensor within the chemoreceptor, which leads to the inhibition of K+ channels and subsequent membrane depolarization. Cytosolic Ca2+ levels increase, through either extracellular Ca2+ entry via voltage-dependant Ca2+ channels or the release of Ca2+ from intracellular stores, thereby facilitating vesicle fusion and the release of neurotransmitters. This neurosecretion activates the afferent nerve fibers innervating the chemoreceptors, resulting in the signal being transmitted to the central nervous system (CNS) where it is processed to elicit downstream responses (Gonzalez et al., 2010; Zachar and Jonz, 2012; Prabhakar, 2013; Lopez-Barneo et al., 2016; Ortega-Sáenz et al., 2020).
Regardless of vertebrate class, the molecular mechanisms underlying acute O2 sensing remain elusive (Rakoczy and Wyatt, 2018). The earliest ideas for molecular O2 sensing were based on mitochondrial inhibition. In this scheme, inhibition of the mitochondrial electron transport chain under hypoxic conditions leads to decreased ATP production that is sensed by ATP-sensitive K+ channels, resulting in depolarization and neurotransmitter release (Duchen and Biscoe, 1992a; Duchen and Biscoe, 1992b; Wyatt and Buckler, 2004; Varas et al., 2007). In addition, the decrease in ATP may cause AMP to rise, which could activate AMP-activated protein kinase (AMPK), further phosphorylating membrane ion channels and leading to depolarization; thus, AMPK is a candidate O2 sensor (Evans, 2004). Furthermore, disruption of mitochondrial complex I on the electron transport chain could increase production of reactive oxygen species (ROS), changing the redox status of membrane ion channels and thus initiating excitation (Fernandez-Aguera et al., 2015; Gao et al., 2017). The gasotransmitters CO and H2S also have been proposed as components of the molecular mechanism for O2 sensing (Li et al., 2010; Buckler, 2012; Yuan et al., 2015). Lactate is one of the newest candidates to be proposed as a member of the O2 sensing pathway. Chang et al. (2015) demonstrated that the olfactory receptor encoded by Olfr78 is sensitive to lactate, which may accumulate during hypoxia. Olfr78 knockout mice did not exhibit a HVR but responded normally to hypercapnia. However, the idea of lactate being involved in O2 sensing is not universally accepted because the original results obtained using Olfr78 knockout mice were not fully reproducible (Chang et al., 2018; Torres-Torrelo et al., 2018). It is likely that additional molecular mechanisms for O2 chemoreception will be proposed. Indeed, it is likely that ultimately multiple mechanisms will be identified for O2 sensing within the chemoreceptors (Kumar and Bin-Jaliah, 2007).
In fishes, the molecular mechanisms of O2 chemoreception have received less attention, and only H2S and lactate have been examined in the context of cellular (NEC) O2 sensing. In trout branchial tissues where gill NECs are located, genes for the H2S-synthesizing enzymes, cystathionine ß-synthase and cystathionine γ-lyase, are expressed (Olson et al., 2008). Further, gill homogenates produce H2S enzymatically, a process which is inhibited by high levels of O2 (Olson et al., 2008). Behaviourally, intrabuccal injection of H2S in anaesthetized trout produced increases in fV and VAMP similar to those of the HVR (Olson et al., 2008). Similar results were obtained in zebrafish larvae in which H2S elicited hyperventilation that was blocked by preventing endogenous H2S synthesis throughout the body, including in the cystathionine γ-lyase-containing skin NECs (Porteus et al., 2014). Additionally, H2S exposure increased [Ca 2+]i in NECs isolated from zebrafish gill and resulted in membrane depolarization similar to that observed under hypoxia (Olson et al., 2008; Perry et al., 2016). Lactate can also elevate [Ca 2+]i in isolated killifish (Fundulus heteroclitus) NECs (Leonard et al., 2022). In addition, lactate also elevates gill ventilation in a dose-dependent manner independent of pH changes in both the striped catfish (Pangasianodon hypophthalmus) and trout, with this response being attenuated following denervation of the first gill arch (Thomsen et al., 2017; Thomsen et al., 2019). Thus the existing evidence suggests that both H2S and lactate have the potential to participate in O2 sensing within NECs in fish. Two other gasotransmitters, CO and NO, also can modify ventilatory responses in fishes, with CO inhibiting ventilation in goldfish (Tzaneva and Perry, 2014) and zebrafish (Tzaneva and Perry, 2016). Interestingly, the effects of NO on ventilation are not only dependent on developmental age–NO stimulates breathing in zebrafish larvae while inhibiting breathing in adults (Porteus et al., 2015)–but also on HIF-1α, as NO is unable to contribute to the HVR in mutant larvae lacking HIF-1 α. However, there is no direct evidence that CO or NO participates in O2 sensing specifically at the level of NECs (Olson et al., 2012; Mandic et al., 2019). A recent single-cell transcriptomic analysis of the zebrafish gill (Pan et al., 2022) revealed high expression of genes encoding for NADH dehydrogenase and cytochrome c oxidase in NECs, genes related to mitochondrial function that have been implicated in O2 sensing in mammals.
Under voltage-clamp conditions, isolated gill NECs from adult zebrafish (Jonz et al., 2004) and channel catfish (Burleson et al., 2006) respond with a decrease in K+ current that is insensitive to voltage-dependent K+ channel blockers but sensitive to the background K+ channel blocker, quinidine (Jonz et al., 2004). In addition, hypoxia caused a reversible depolarization that was associated with a conductance decrease in isolated zebrafish gill NECs under current-clamp conditions; this response was reduced in the presence of quinidine (Jonz et al., 2004). In isolated gill NECs from goldfish, hypoxia exposure resulted in increases in [Ca2+]i and vesicular activity that were blocked by the Ca2+ channel blocker, cadmium, and the L-type Ca2+ channel blocker, nifedipine (Zachar et al., 2017). These data suggest that hypoxia sensing in gill NECs is mediated by inhibition of a background K+ channel leading to depolarization, an increase in [Ca2+]i, and possibly neurosecretion, similar to that observed in glomus cells of the mammalian carotid body (Lopez-Barneo et al., 2016).
Although there is evidence that trout NECs appear “degranulated” after hypoxia exposure (Dunel-Erb et al., 1982), and that NECs possess the synaptic vesicle protein SV2 indicative of neurosecretion potential (Jonz et al., 2004), there is no direct evidence of any neurotransmitter being released by NECs under hypoxic conditions. Serotonin (5-HT) is the only neurotransmitter directly and routinely identified in fish NECs, but there is an array of neurotransmitters that may enable signal transduction between NECs and the afferent neurons, and which have been shown to modulate breathing. The neuroendocrine control of breathing in fish was recently reviewed (Reed and Jonz, 2022) and thus, only a brief summary will be provided here. Using isolated gill arches from rainbow trout, application of acetylcholine resulted in potent stimulation of afferent neural activity, while 5-HT and dopamine caused brief, small bursts in neural activity followed by mild inhibition (Burleson and Milsom, 1995). Adrenaline and noradrenaline did not elicit any neural responses (Burleson and Milsom, 1995). However, when neurotransmitters were administered through intra-vascular injection or applied externally, 5-HT, adrenaline, noradrenaline, acetylcholine and purines generally stimulated ventilation, whereas dopamine inhibited ventilation (Burleson and Milsom, 1995). A similar inhibitory effect of dopamine on ventilation was reported in larval zebrafish (Shakarchi et al., 2013). In addition, single-cell transcriptomic analysis of the zebrafish gill showed that NECs and neurons express genes encoding transmembrane receptors for serotonergic, cholinergic and dopaminergic neurotransmission (Pan et al., 2022). These results are broadly consistent with the mammalian situation in which acetylcholine and purines are excitatory carotid body neurotransmitters whereas dopamine is inhibitory (Leonard et al., 2018). However, unlike in mammals in which neurotransmitter secretion from the carotid body was demonstrated, studies in fish, while establishing a direct link between neurotransmitters and ventilation, have not yet revealed the specific site of action. Future studies are needed to directly examine neurosecretion from NECs under hypoxic conditions.
Upon activation of the chemoreceptors and the presumed release of neurotransmitters, the signal is transmitted to the CNS leading to downstream ventilatory responses. Existing data suggest that cranial nerves IX (glossopharyngeal) and X (vagus) are the afferent neurons innervating the gill chemoreceptors. Thus, total gill denervation of cranial nerves IX and X decreased the magnitude of the HVR in nine species over a wide range of taxonomic diversity (Milsom, 2012) whereas rhythmic stimulation of cranial nerve X entrains the respiratory rhythm in carp (Cyprinus carpio) (De Graaf and Roberts, 1991). Using genetically encoded calcium sensors GCaAMP6s under control of the pan-neuronal promoter elavl3, Rosales et al. (2019) showed that in zebrafish, the average magnitude of Ca2+ transients increased within the sensory ganglia of cranial nerve X upon exposure to hypoxia, providing arguably the first direct in vivo evidence for any of the O2 sensing components in a fish. Central projections from the ganglia of cranial nerves IX and X enter the hindbrain at presumptive rhombomere 6 and via a series of nerve roots to form a ‘plexus’ (Kucenas et al., 2006). Given that the preBötzinger complex, which is the origin of respiratory motor output in mammals, arises from rhombomeres 6 and 7 (Mellen and Thoby-Brisson, 2012), and also that rhombomere 7 is essential for gill and buccal bursts in bullfrog tadpoles (Duchcherer et al., 2013), it is reasonable to hypothesize that O2 signals originating in the chemoreceptors are conveyed to the respiratory motor output centres in the hindbrain via cranial nerves IX and X.
3.2 Hypercapnia
3.2.1 Peripheral chemoreceptors
In water-breathing adult fishes, evidence for a primarily branchial location of CO2 chemosensors has come from studies in which CO2-stimulated ventilatory responses were eliminated by denervation or extirpation of one or more gill arches (Burleson and Smatresk, 2000; Reid et al., 2000; Sundin et al., 2000; McKendry et al., 2001; Perry and Reid, 2002; Florindo et al., 2004; Bojink et al., 2010). These studies also revealed a predominant role for the first gill arch in eliciting CO2-stimulated ventilatory responses in some species [rainbow trout (Perry and Reid, 2002) and jeju Hoplerythrinus unitaeniatus (Bojink et al., 2010), but see also (Sundin et al., 2000)], and they identified cranial nerves IX and X as those responsible for transmitting branchial CO2 chemoreceptor activity to the brain. In the tambaqui Colossoma macropomum, total gill denervation did not completely eliminate ventilatory responses to CO2, suggesting that extra-branchial CO2 chemoreceptors may be present in some species (Milsom et al., 2002; Florindo et al., 2004). These extra-branchial receptors are likely to be associated with the orobranchial cavity or other peripheral sites because the balance of evidence does not support the presence of central CO2/pH chemoreceptors in strictly water-breathing fishes (for discussion, see Tresguerres et al., 2019; Milsom et al., 2022).
The branchial chemoreceptors appear to respond primarily to water CO2 rather than to water pH or to changes in blood CO2/pH (reviewed by Gilmour and Perry, 2007; Milsom, 2012). Evidence to support this consensus has come from studies that have attempted to independently manipulate water versus blood CO2 versus pH. For example, injection of CO2-equilibrated water into the buccal cavity elicits hyperventilation, whereas injection of isocapnic water adjusted to the pH corresponding to that of the CO2-equilibrated water has little or no effect (Reid et al., 2000; Sundin et al., 2000; Perry and McKendry, 2001; Gilmour et al., 2005; Bojink et al., 2010). These data argue for the importance of water CO2 rather than water pH as the proximate factor controlling ventilation during ambient hypercapnia. A comparison between injection of CO2-enriched water into the buccal cavity and injection of CO2-enriched saline into the vasculature similarly argues for the importance of water CO2, with injection of CO2-enriched saline being without effect on ventilation (Perry and McKendry, 2001; Perry and Reid, 2002; Gilmour et al., 2005; Bojink et al., 2010). In addition, treatments that raise internal (but not water) CO2 levels do not elicit hyperventilatory responses. For example, arterial CO2 tension more than doubled in tambaqui treated with the carbonic anhydrase inhibitor acetazolamide (to inhibit CO2 excretion), yet ventilation did not change until the fish were exposed to aquatic hypercapnia (Gilmour et al., 2005). Where questions remain is with the possibility of internally-oriented receptors that detect acid-base status. Although injections of acidified saline into the vasculature (Reid et al., 2000; Sundin et al., 2000; Bojink et al., 2010) or acetazolamide treatment (Gilmour et al., 2005) generally have not evoked ventilatory responses, several studies have reported results that are consistent with ventilation being adjusted by blood acid-base status (for detailed discussion, see Gilmour and Perry, 2007; Tresguerres et al., 2019). In particular, a close correspondence between ventilation and blood acid-base status during recovery from exhaustive exercise was observed in rainbow trout. Treatment of trout with carbonic anhydrase to enhance CO2 excretion alleviated not only the acid-base disturbance, but also the accompanying hyperventilation (Wood and Munger, 1994). Thus, the door remains open to the possibility that ventilation may be adjusted according to internal acid-base status, with further research needed to refute or confirm this possibility.
Taken as a whole, the studies of ventilatory responses to hypercapnia suggest that CO2 chemoreceptors are located in the gill of (adult) fishes and respond primarily to changes in water CO2 levels. As with hypoxia, NECs located in the gill of adult fishes are thought to serve as the CO2 chemoreceptors. In comparison with hypoxia, however, very few studies have investigated ventilatory responses to CO2 in larvae, and there are no data that directly link cutaneous NECs to CO2-stimulated ventilatory responses. Changes in NEC abundance, size and transcriptome in response to changes in environmental O2 levels have provided indirect evidence of NEC involvement in O2 chemoreception (see above). For CO2 chemoreception, however, the data are both sparse and mixed. Acclimation to hypercapnic conditions for 28 d had no impact on the density of branchial (serotonin-positive) NECs in adult zebrafish (Vulesevic et al., 2006). On the other hand, increases in branchial NEC density were reported in mangrove rivulus acclimated to hypercapnia or to acidic water, although whether there were functional consequences of the changes in NEC density was not explored (Robertson et al., 2015). Overall, the paucity of data makes it difficult to draw any firm conclusions. However, there is evidence that branchial NECs detect and respond to hypercapnia in a manner that is consistent with their involvement in CO2-evoked reflexes.
Direct evidence that branchial NECs can serve as CO2 chemoreceptors was obtained from two studies of cellular responses to CO2/pH in NECs isolated from the gills of adult zebrafish. Qin et al. (2010) reported that exposure to hypercapnia caused depolarization in a subset of the NECs that were tested, with the magnitude of the response increasing with increasing partial pressure of CO2. The NECs that responded to increases in CO2 also depolarized in response to lowering of O2 levels, indicating that at least some NECs are dual sensors of O2 and CO2. Subsequently, an increase in [Ca2+]i in response to hypercapnia was reported by Abdallah et al. (2015a). Although both responses were elicited by hypercapnia, the sensory mechanisms involved appear to differ, with a CO2-stimulated change in intracellular pH being required for depolarization of the NEC (Qin et al., 2010), but a fall in extracellular pH that is independent of CO2 being required for the increase in [Ca2+]i (Abdallah et al., 2015a). Further research is needed to resolve this difference, and to reconcile the apparent discrepancy between sensory mechanisms at the cellular level (i.e. where extracellular pH is an adequate stimulus for a change in [Ca2+]i) and the stimuli that elicit ventilatory responses at the whole-animal level (i.e. changes in water CO2 but not pH; see above). In addition, there is a need to link activation of CO2-sensing NECs directly to the occurrence of CO2-stimulated ventilatory reflexes.
3.2.2 Molecular mechanisms and pathways of CO2 sensing
Current understanding of the signalling associated with NEC CO2 sensing is based on the two studies mentioned above on NECs isolated from adult zebrafish gills (Qin et al., 2010; Abdallah et al., 2015a), and from studies in which cardiorespiratory responses to CO2 in larval zebrafish were investigated (Miller et al., 2014; Koudrina et al., 2020; Kunert et al., 2022). As with O2 sensing (Jonz et al., 2004), the initial cellular response to CO2 is depolarization, which is caused by the inhibition of K+ flux through background K+ channels (Qin et al., 2010). It is likely that multiple K+ channels are present in NECs, with evidence supporting the involvement of TASK-2 (Koudrina et al., 2020), a member of the tandem-pore domains in a weak inward rectifying K+ channel (TWIK)-related acid-sensitive K+ (TASK) channel family. Functional studies carried out on zebrafish TASK-2 expressed in HEK-293 cells revealed that it is inhibited by intracellular or extracellular acidification as well as by increases in CO2 (Peña-Münzenmayer et al., 2013). Notably, the inhibition of TASK-2 by CO2 included both a contribution of intracellular acidification and a direct effect of CO2 that was not dependent on changes in intracellular pH. Therefore, the properties of TASK-2 channels are consistent with the requirements for CO2 sensing in NECs. Immunohistochemistry was used to demonstrate that TASK-2 is expressed by serotonin-positive NECs in the skin of larvae and the gills of adult zebrafish (Koudrina et al., 2020). A functional role for TASK-2 was identified using antisense oligonucleotide morpholinos to knock down TASK-2 and/or its paralog TASK-2b, which attenuated the hyperventilatory responses to hypercapnia in 4 dpf zebrafish larvae (Koudrina et al., 2020). Interestingly, the genes that encode for TASK-2 (kcnk5a) and TASK-2b (kcnk5b) were not detected in a single-cell transcriptomic analysis of zebrafish NECs (Pan et al., 2022) (nor was ca17a, see below). However, the focus of Pan et al. (2022) was on NECs that respond to hypoxia. If only a subset of NECs serve as bimodal sensors of O2 and CO2 (Qin et al., 2010), then it could be difficult to detect differential expression of transcripts specific to CO2 sensing.
CO2-induced depolarization of NECs is expected to cause an increase in [Ca2+]i. Consistent with this pathway, Abdallah et al. (2015a) documented increases in [Ca2+]i in isolated zebrafish NECs exposed to hypercapnia, with Ca2+ being derived primarily from intracellular stores. The increase in [Ca2+]i, in turn, is expected to lead to neurosecretion, transmission of the sensory signal to the brain and activation of the appropriate ventilatory response. However, currently there are no data to support this pathway, nor has any specific neurotransmitter been identified as being secreted. Serotonin is viewed as likely to be involved owing to its status as the predominant neurochemical in NECs (Porteus et al., 2012) and the ability of serotonin receptor agonists to elicit hyperventilatory responses in zebrafish larvae (Jonz et al., 2015b; for reviews see Pan and Perry, 2020; Reed and Jonz, 2022). Although, as alluded to above (section 3.1.2), the fact that certain neurochemicals evoke hyperventilation does not necessarily indicate that they are secreted by NECs.
The CO2 sensing mechanism likely involves carbonic anhydrase (CA), specifically the cytosolic isoform Ca17a (Ferreira-Martins et al., 2016). Immunohistochemistry supports the presence of CA or Ca17a specifically in larval cutaneous and adult branchial NECs of zebrafish (Qin et al., 2010; Miller et al., 2014; Kunert et al., 2022). Pharmacological inhibition of CA, as well as specific knockdown or knockout of Ca17a, blunts the cardiorespiratory responses to hypercapnia in zebrafish larvae (Miller et al., 2014; Kunert et al., 2022). These data argue that Ca17a contributes to CO2 sensing, yet its specific role at the cellular level remains unclear. Inhibition of CA both slowed the rate and reduced the magnitude of CO2-stimulated depolarization in isolated branchial NECs (Qin et al., 2010). In conjunction with the observation that extracellular acidification was not needed to elicit depolarization, these data suggest that depolarization occurs in response to CO2 entry into the cell and its CA-catalyzed hydration to H+, resulting in intracellular acidification. However, intracellular acidification was not sufficient to elicit a [Ca2+]i response, nor did inhibition of CA alter the [Ca2+]i response to hypercapnia even though intracellular acidification was slowed (Abdallah et al., 2015a). Indeed, extracellular acidification alone was sufficient to elicit a [Ca2+]i response (Abdallah et al., 2015a). Resolving these discrepancies likely will provide insight into the role of Ca17a in CO2 sensing.
4 Knowledge gaps and perspectives
Despite decades of research focused on unravelling the mechanisms of O2 sensing in fish, there remain several significant unanswered questions. What are the molecular O2 sensors in O2 chemosensing cells? What is/are the neurotransmitter(s) secreted by O2 chemoreceptors? How are peripheral signals from the O2 chemoreceptors integrated within the CNS to evoke the HVR? Similar questions apply to the mechanisms of CO2 sensing, which have received much less attention. With respect to CO2 sensing, additional questions surround the nature of the critical stimulus that activates the CO2 sensor–is molecular CO2 itself sensed, or is the necessary stimulus a change in pH, and if so, is it extracellular or intracellular pH? A combination of CO2 and a resultant pH change is also possible. Further, for both O2 and CO2 sensing, there is a need to gather additional empirical evidence to demonstrate convincingly that NECs function as respiratory chemoreceptors in vivo. In our opinion, the absence of direct in vivo data to support the idea that NECs function as O2/CO2 chemoreceptors to regulate ventilation is THE limiting factor constraining progress in the field of piscine breathing control.
Providing the empirical evidence to answer these questions likely will be constrained by the technical challenges associated with identifying chemoreceptors in vivo or culturing chemoreceptor-nerve complexes in vitro. With recent advances in genetic manipulation, especially Tol2 based transgenesis and CRISPR/Cas9 based knockout (Zimmer et al., 2019), the zebrafish is emerging as an important model species to examine O2 and CO2 chemoreception in vivo. First and foremost, the promoters of tph1a and vmat2 have been identified to be able to drive transgene expression in zebrafish skin and gill NECs (Pan et al., 2021a; Pan et al., 2021b; Pan et al., 2022). Given the transparency of zebrafish larvae and the ability to render adult zebrafish transparent by using the Casper line (White et al., 2008), a wide array of in vivo imaging techniques can now be applied. For example, calcium activity within NECs in response to changing levels of PO2 can be examined through in vivo calcium imaging using genetically encoded calcium indicators (Chen et al., 2013; Dana et al., 2016). Or, neurotransmitters being released by NECs under hypoxia can be examined by expressing specific neurotransmitter sensors (Wang et al., 2018) in NECs or the cranial sensory nerves that projects into the gill region (Kucenas et al., 2006).
An alternate approach that allows for experimental manipulation of sensory pathways is to express transgenes for cell activation, inhibition or ablation uniquely in NECs. Although genes such as tph1a and vmat2 are expressed in NECs, they are also found in cells within the CNS that are critical for the regulation of breathing. Thus, driving transgenes with tph1a or vmat2 promoters also would introduce transgene activity within the CNS, complicating data interpretation. It will be important, therefore, to identify genes that are expressed exclusively in NECs. Once achieved, NECs could be activated specifically with light or capsaicin by expressing channel rhodopsin (Antinucci et al., 2020) or rat TRPV1 channels (Matty et al., 2016). Similarly, NECs could be inhibited with light by expressing transient receptor potential cation channels (Antinucci et al., 2020) or ablated with metronidazole treatment in fish with NECs expressing nitroreductase (Sharrock et al., 2022). With such experiments, it would be possible to establish a direct link between NEC activity and ventilation. In summary, combining gene manipulation with physiological measurements offers a powerful approach to advance the field of chemoreception and control of breathing in fishes.
Author contributions
SFP wrote Section 1 (introduction) and Section 2 (ventilatory adjustments to environmental changes in respiratory gases). YKP wrote Section 3.1 (hypoxia) and KMG wrote Section 3.2 (hypercapnia). All authors contributed to Section 4 (knowledge gaps and perspectives) and final editing.
Funding
The support was provided by Natural Sciences and Engineering Council of Canada (NSERC) Discovery grants to SFP and KMG.
Conflict of interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Publisher’s note
All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.
References
Abdallah S., Jonz M. G., Perry S. F. (2015a). Extracellular H+ induces Ca2+ signals in respiratory chemoreceptors of zebrafish. Pflügers Arch. 467, 399–413. doi:10.1007/s00424-014-1514-2
Abdallah S. J., Thomas B. S., Jonz M. G. (2015b). Aquatic surface respiration and swimming behaviour in adult and developing zebrafish exposed to hypoxia. J. Exp. Biol. 218, 1777–1786. doi:10.1242/jeb.116343
Antinucci P., Dumitrescu A., Deleuze C., Morley H. J., Leung K., Hagley T., et al. (2020). A calibrated optogenetic toolbox of stable zebrafish opsin lines. Elife 9, e54937. doi:10.7554/eLife.54937
Bailly Y., Dunel-Erb S., Geffard M., Laurent P. (1989). The vascular and epithelial serotonergic innervation of the actinopterygian gill filament with special reference to the trout, Salmo gairdneri. Cell Tissue Res. 258, 349–363. doi:10.1007/bf00239455
Bailly Y., Dunel-Erb S., Laurent P. (1992). The neuroepithelial cells of the fish gill filament: Indolamine-immunocytochemistry and innervation. Anat. Rec. 233, 143–161. doi:10.1002/ar.1092330118
Bailly Y. (2009). “Serotonergic neuroepithelial cells in fish gills: Cytology and innervation,” in Airway chemoreceptors in the vertebrates. Editor G. Zaccone (Boca Raton: CRC Press), 61–98.
Bojink C. L., Florindo L. H., Leite C. a. C., Kalinin A. L., Milsom W. K., Rantin F. T. (2010). Hypercarbic cardiorespiratory reflexes in the facultative air-breathing fish jeju (Hoplerythrinus unitaeniatus): The role of branchial CO2 chemoreceptors. J. Exp. Biol. 213, 2797–2807. doi:10.1242/jeb.040733
Buckler K. J. (2012). Effects of exogenous hydrogen sulphide on calcium signalling, background (TASK) K channel activity and mitochondrial function in chemoreceptor cells. Pflügers Arch. 463, 743–754. doi:10.1007/s00424-012-1089-8
Burggren W. W. (1982). Air gulping" improves blood oxygen transport during aquatic hypoxia in the goldfish Carassius auratus. Physiol. Zool. 55, 327–334. doi:10.1086/physzool.55.4.30155860
Burggren W. W., Bautista G. M., Coop S. C., Couturier G. M., Delgadillo S. P., García R. M., et al. (2016). Developmental cardiorespiratory physiology of the air-breathing tropical gar, Atractosteus tropicus. Am. J. Physiol. 311, R689–R701. doi:10.1152/ajpregu.00022.2016
Burleson M. L., Mercer S. E., Wilk-Blaszczak M. A. (2006). Isolation and characterization of putative O2 chemoreceptor cells from the gills of channel catfish (Ictalurus punctatus). Brain Res. 1092, 100–107. doi:10.1016/j.brainres.2006.03.085
Burleson M. L., Milsom W. K. (1995). Cardio-ventilatory control in rainbow trout: I. Pharmacology of branchial, oxygen-sensitive chemoreceptors. Respir. Physiol. 100, 231–238. doi:10.1016/0034-5687(95)91595-x
Burleson M. L., Milsom W. K. (2003). “Comparative aspects of O2 chemoreception. Anatomy, physiology, and environmental applications,” in Oxygen sensing. Responses and adaptation to hypoxia. Editors S. Lahiri, G. L. Semenza, and N. R. Prabhakar (New York: Marcel Dekker), 685–707.
Burleson M. L., Smatresk N. J. (2000). Branchial chemoreceptors mediate ventilatory responses to hypercapnic acidosis in channel catfish. Comp. Biochem. Physiol. 125A, 403–414. doi:10.1016/s1095-6433(00)00167-7
Burleson M. L., Smatresk N. J., Milsom W. K. (1992). “Afferent inputs associated with cardioventilatory control in fish,” in Fish Physiology v12B the cardiovascular system. Editors W. S. Hoar, D. J. Randall, and A. P. Farrell (San Diego: Academic Press), 389–423.
Carroll J. L. (2003). Developmental plasticity in respiratory control. J. Appl. Physiol. 94, 375–389. doi:10.1152/japplphysiol.00809.2002
Chang A. J., Kim N. S., Hireed H., De Arce A. D., Ortega F. E., Riegler J., et al. (2018). Chang et al. reply. Nature 561, E41. doi:10.1038/s41586-018-0547-7
Chang A. J., Ortega F. E., Riegler J., Madison D. V., Krasnow M. A. (2015). Oxygen regulation of breathing through an olfactory receptor activated by lactate. Nature 527, 240–244. doi:10.1038/nature15721
Chapman L. J., McKenzie D. J. (2009). “Behavioral responses and ecological consequences,” in Fish Physiology v27 hypoxia. Editors J. G. Richards, A. P. Farrell, and C. J. Brauner (USA: Elsevier), 25–77.
Chen T.-W., Wardill T. J., Sun Y., Pulver S. R., Renninger S. L., Baohan A., et al. (2013). Ultrasensitive fluorescent proteins for imaging neuronal activity. Nature 499, 295–300. doi:10.1038/nature12354
Coccimiglio M. L., Jonz M. G. (2012). Serotonergic neuroepithelial cells of the skin in developing zebrafish: Morphology, innervation and oxygen-sensitive properties. J. Exp. Biol. 215, 3881–3894. doi:10.1242/jeb.074575
Cochrane P. V., Jonz M. G., Wright P. A. (2021). The development of the O2-sensing system in an amphibious fish: Consequences of variation in environmental O2 levels. J. Comp. Physiol. B 191, 681–699. doi:10.1007/s00360-021-01379-5
Dana H., Mohar B., Sun Y., Narayan S., Gordus A., Hasseman J. P., et al. (2016). Sensitive red protein calcium indicators for imaging neural activity. Elife 5, e12727. doi:10.7554/eLife.12727
De Boeck G., Wood C. M. (2015). Does ammonia trigger hyperventilation in the elasmobranch, Squalus acanthias suckleyi? J. Exp. Biol. 206, 25–35. doi:10.1016/j.resp.2014.11.009
De Graaf P., Roberts B. (1991). Effects of vagal sensory input on the breathing rhythm of the carp. J. Exp. Biol. 155, 77–91. doi:10.1242/jeb.155.1.77
Diaz R. J. (2001). Overview of hypoxia around the world. J. Environ. Qual. 30, 275–281. doi:10.2134/jeq2001.302275x
Donnelly D. F. (2000). Developmental aspects of oxygen sensing by the carotid body. J. Appl. Physiol. 88, 2296–2301. doi:10.1152/jappl.2000.88.6.2296
Duchcherer M., Baghdadwala M. I., Paramonov J., Wilson R. J. (2013). Localization of essential rhombomeres for respiratory rhythm generation in bullfrog tadpoles using a binary search algorithm: Rhombomere 7 is essential for the gill rhythm and suppresses lung bursts before metamorphosis. Dev. Neurobiol. 73, 888–898. doi:10.1002/dneu.22108
Duchen M., Biscoe T. (1992a). Mitochondrial function in type I cells isolated from rabbit arterial chemoreceptors. J. Physiol. 450, 13–31. doi:10.1113/jphysiol.1992.sp019114
Duchen M., Biscoe T. (1992b). Relative mitochondrial membrane potential and [Ca2+]i in type I cells isolated from the rabbit carotid body. J. Physiol. 450, 33–61. doi:10.1113/jphysiol.1992.sp019115
Dunel-Erb S., Bailly Y., Laurent P. (1982). Neuroepithelial cells in fish gill primary lamellae. J. Appl. Physiol. 53, 1342–1353. doi:10.1152/jappl.1982.53.6.1342
Eom J., Fehsenfeld S., Wood C. M. (2020). Is ammonia excretion affected by gill ventilation in the rainbow trout Oncorhynchus mykiss? Respir. Physiol. Neurobiol. 275, 103385. doi:10.1016/j.resp.2020.103385
Eom J., Giacomin M., Clifford A. M., Goss G. G., Wood C. M. (2019). Ventilatory sensitivity to ammonia in the Pacific hagfish (Eptatretus stoutii), a representative of the oldest extant connection to the ancestral vertebrates. J. Exp. Biol. 222, jeb199794. doi:10.1242/jeb.199794
Eom J., Wood C. M. (2021). Brain and gills as internal and external ammonia sensing organs for ventilatory control in rainbow trout, Oncorhynchus mykiss. Comp. Biochem. Physiol. A 254, 110896. doi:10.1016/j.cbpa.2021.110896
Evans A. M. (2004). “Hypoxia, cell metabolism, and cADPR accumulation,” in Hypoxic pulmonary vasoconstriction. Editor X. J. J. Yuan, (New York: Springer), 313–338.
Fernandez-Aguera M. C., Gao L., Gonzalez-Rodriguez P., Pintado C. O., Arias-Mayenco I., Garcia-Flores P., et al. (2015). Oxygen sensing by arterial chemoreceptors depends on mitochondrial complex I signaling. Cell. Metab. 22, 825–837. doi:10.1016/j.cmet.2015.09.004
Ferreira-Martins D., McCormick S. D., Campos A., Lopes-Marques M., Osório H., Coimbra J., et al. (2016). A cytosolic carbonic anhydrase molecular switch occurs in the gills of metamorphic sea lamprey. Sci. Rep. 6, 33954. doi:10.1038/srep33954
Florindo L. H., Reid S. G., Kalinin A. L., Milsom W. K., Rantin F. T. (2004). Cardiorespiratory reflexes and aquatic surface respiration in the neotropical fish tambaqui (Colossoma macropomum): Acute responses to hypercarbia. J. Comp. Physiol. B 174, 319–328. doi:10.1007/s00360-004-0417-5
Fu C., Wilson J. M., Rombough P. J., Brauner C. J. (2010). Ions first: Na+uptake shifts from the skin to the gills before O2 uptake in developing rainbow trout, Oncorhynchus mykiss. Proc. R. Soc. Lond. B 277, 1553–1560. doi:10.1098/rspb.2009.1545
Furch K., Junk W. J. (1997). “Physicochemical conditions in the floodplains,” in The central Amazon floodplain. Editor W. J. Junk (Berlin, Heidelberg: Springer), 69–108.
Gao L., González-Rodríguez P., Ortega-Sáenz P., López-Barneo J. (2017). Redox signaling in acute oxygen sensing. Redox Biol. 12, 908–915. doi:10.1016/j.redox.2017.04.033
Gee J. H., Tallman R. F., Smart H. J. (1978). Reactions of some great plains fishes to progressive hypoxia. Can. J. Zool. 56, 1962–1966. doi:10.1139/z78-263
Gilmour K. M., Milsom W. K., Rantin F. T., Reid S. G., Perry S. F. (2005). Cardiorespiratory responses to hypercarbia in tambaqui (Colossoma macropomum): Chemoreceptor orientation and specificity. J. Exp. Biol. 208, 1095–1107. doi:10.1242/jeb.01480
Gilmour K. M., Perry S. F. (2007). “Branchial chemoreceptor regulation of cardiorespiratory function,” in Fish Physiology v25 sensory systems neuroscience. Editors T. J. Hara, and B. Zielinski (USA: Elsevier), 97–151.
Gilmour K. M. (2001). The CO2/pH ventilatory drive in fish. Comp. Biochem. Physiol. 130A, 219–240. doi:10.1016/s1095-6433(01)00391-9
Glass M. L. (1992). “Ventilatory responses to hypoxia in ectothermic vertebrates,” in Physiological adaptations in vertebrates, respiration, circulation, and metabolism. Editors S. C. Wood, R. E. Weber, A. R. Hargens, and R. W. Millard (New York: Marcel Dekker), 97–118.
Gonzalez C., Agapito M. T., Rocher A., Gomez-Nino A., Rigual R., Castaneda J., et al. (2010). A revisit to O2 sensing and transduction in the carotid body chemoreceptors in the context of reactive oxygen species biology. Respir. Physiol. Neurobiol. 174, 317–330. doi:10.1016/j.resp.2010.09.002
Heisler N., Toews D. P., Holeton G. F. (1988). Regulation of ventilation and acid-base status in the elasmobranch Scyliorhinus stellaris during hyperoxia induced hypercapnia. Respir. Physiol. 71, 227–246. doi:10.1016/0034-5687(88)90018-7
Ho D. H., Burggren W. W. (2012). Parental hypoxic exposure confers offspring hypoxia resistance in zebrafish (Danio rerio). J. Exp. Biol. 215, 4208–4216. doi:10.1242/jeb.074781
Holeton G. F., Randall D. J. (1967). The effect of hypoxia upon the partial pressure of gases in the blood and water afferent and efferent to the gills of rainbow trout. J. Exp. Biol. 46, 317–327. doi:10.1242/jeb.46.2.317
Holeton G. F. (1971). Respiratory and circulatory responses of rainbow trout larvae to carbon monoxide and to hypoxia. J. Exp. Biol. 55, 683–694. doi:10.1242/jeb.55.3.683
Iwama G. K., Boutilier R. G., Heming T. A., Randall D. J., Mazeaud M. (1987). The effects of altering gill water flow on gas transfer in rainbow trout. Can. J. Zool. 65, 2466–2470. doi:10.1139/z87-372
Jones D. R., Schwarzfeld T. (1974). The oxygen cost to the metabolism and efficiency of breathing in trout (Salmo gairdneri). Respir. Physiol. 21, 241–254. doi:10.1016/0034-5687(74)90097-8
Jonz M. G., Buck L. T., Perry S. F., Schwerte T., Zaccone G. (2015a). Sensing and surviving hypoxia in vertebrates. Ann. N.Y. Acad. Sci. 1365, 43–58. doi:10.1111/nyas.12780
Jonz M. G., Fearon I. M., Nurse C. A. (2004). Neuroepithelial oxygen chemoreceptors of the zebrafish gill. J. Physiol. 560, 737–752. doi:10.1113/jphysiol.2004.069294
Jonz M. G., Nurse C. A. (2005). Development of oxygen sensing in the gills of zebrafish. J. Exp. Biol. 208, 1537–1549. doi:10.1242/jeb.01564
Jonz M. G., Nurse C. A. (2003). Neuroepithelial cells and associated innervation of the zebrafish gill: A confocal immunofluorescence study. J. Comp. Neurol. 461, 1–17. doi:10.1002/cne.10680
Jonz M. G., Nurse C. A. (2006). Ontogenesis of oxygen chemoreception in aquatic vertebrates. Respir. Physiol. Neurobiol. 154, 139–152. doi:10.1016/j.resp.2006.01.004
Jonz M. G., Zachar P. C., Da Fonte D. F., Mierzwa A. S. (2015b). Peripheral chemoreceptors in fish: A brief history and a look ahead. Comp. Biochem. Physiol. A 186, 27–38. doi:10.1016/j.cbpa.2014.09.002
Kinkead R., Perry S. F. (1991). The effects of catecholamines on ventilation in rainbow trout during hypoxia or hypercapnia. Respir. Physiol. 84, 77–92. doi:10.1016/0034-5687(91)90020-j
Koudrina N., Perry S. F., Gilmour K. M. (2020). The role of TASK-2 channels in CO2 sensing in zebrafish (Danio rerio). Am. J. Physiol. 319, R329–R342. doi:10.1152/ajpregu.00132.2020
Kramer D. L., McClure M. (1982). Aquatic surface respiration, a widespread adaptation to hypoxia in tropical freshwater fishes. Env. Biol. Fish. 7, 47–55. doi:10.1007/bf00011822
Kramer D. L., Mehegan J. P. (1981). Aquatic surface respiration, an adaptive response to hypoxia in the guppy, Poecilia reticulata (Pisces, Poeciliidae). Env. Biol. Fish. 6, 299–313. doi:10.1007/bf00005759
Kucenas S., Soto F., Cox J., Voigt M. (2006). Selective labeling of central and peripheral sensory neurons in the developing zebrafish using P2X3 receptor subunit transgenes. Neurosci 138, 641–652. doi:10.1016/j.neuroscience.2005.11.058
Kumar P., Bin-Jaliah I. (2007). Adequate stimuli of the carotid body: More than an oxygen sensor? Respir. Physiol. Neurobiol. 157, 12–21. doi:10.1016/j.resp.2007.01.007
Kunert E., Joyce W., Pan Y. K., Chen A., Perry S. F., Gilmour K. M. (2022). The role of cytosolic carbonic anhydrase Ca17a in cardiorespiratory responses to CO2 in developing zebrafish (Danio rerio). Am. J. Physiol. 323, R532–R546. doi:10.1152/ajpregu.00050.2022
Leonard E. M., Salman S., Nurse C. A. (2018). Sensory processing and integration at the carotid body tripartite synapse: Neurotransmitter functions and effects of chronic hypoxia. Front. Physiol. 9, 225. doi:10.3389/fphys.2018.00225
Leonard E. M., Weaver F. E., Nurse C. A. (2022). Lactate sensing by neuroepithelial cells isolated from the gills of killifish (Fundulus heteroclitus). J. Exp. Biol. 225, jeb245088. doi:10.1242/jeb.245088
Li Q., Sun B., Wang X., Jin Z., Zhou Y., Dong L., et al. (2010). A crucial role for hydrogen sulfide in oxygen sensing via modulating large conductance calcium-activated potassium channels. Antioxid. Redox Signal. 12, 1179–1189. doi:10.1089/ars.2009.2926
Lindsey B. W., Smith F. M., Croll R. P. (2010). From inflation to flotation: Contribution of the swimbladder to whole-body density and swimming depth during development of the zebrafish (Danio rerio). Zebrafish 7, 85–96. doi:10.1089/zeb.2009.0616
Ling L., Olson E. B., Vidruk E. H., Mitchell G. S. (1997). Developmental plasticity of the hypoxic ventilatory response. Respir. Physiol. 110, 261–268. doi:10.1016/s0034-5687(97)00091-1
Lopez-Barneo J., Gonzalez-Rodriguez P., Gao L., Fernandez-Aguera M. C., Pardal R., Ortega-Saenz P. (2016). Oxygen sensing by the carotid body: Mechanisms and role in adaptation to hypoxia. Am. J. Physiol. 310, C629–C642. doi:10.1152/ajpcell.00265.2015
Mandic M., Flear K., Qiu P., Pan Y. K., Perry S. F., Gilmour K. M. (2022). Aquatic surface respiration significantly improves survival of zebrafish (Danio rerio) lacking hypoxia inducible factor 1-α. Proc. R. Soc. Lond. B 289, 20211863. doi:10.1098/rspb.2021.1863
Mandic M., Pan Y. K., Gilmour K. M., Perry S. F. (2020). Relationships between the peak hypoxic ventilatory response and critical O2 tension in larval and adult zebrafish (Danio rerio). J. Exp. Biol. 223, jeb213942. jeb.213942. doi:10.1242/jeb.213942
Mandic M., Tzaneva V., Careau V., Perry S. F. (2019). Hif-1α paralogs play a role in the hypoxic ventilatory response of larval and adult zebrafish (Danio rerio). J. Exp. Biol. 222, jeb195198. doi:10.1242/jeb.195198
Matty M. A., Beerman R. W., Tobin D. M. (2016). Drug-inducible, cell-specific manipulation of intracellular calcium in Zebrafish through mammalian TRPV1 expression. Zebrafish 13, 374–375. doi:10.1089/zeb.2016.29004.mat
McDonald D. G., McMahon B. R. (1977). Respiratory development in Arctic char Salvelinus alpinus under conditions of normoxia and chronic hypoxia. Can. J. Zool. 55, 1461–1467. doi:10.1139/z77-189
McKendry J. E., Milsom W. K., Perry S. F. (2001). Branchial CO2 receptors and cardiorespiratory adjustments during hypercarbia in Pacific spiny dogfish (Squalus acanthias). J. Exp. Biol. 204, 1519–1527. doi:10.1242/jeb.204.8.1519
Mellen N. M., Thoby-Brisson M. (2012). Respiratory circuits: Development, function and models. Curr. Opin. Neurobiol. 22, 676–685. doi:10.1016/j.conb.2012.01.001
Miller S., Pollack J., Bradshaw J., Kumai Y., Perry S. F. (2014). Cardiac responses to hypercapnia in larval zebrafish (Danio rerio): The links between CO2 chemoreception, catecholamines and carbonic anhydrase. J. Exp. Biol. 217, 3569–3578. doi:10.1242/jeb.107987
Milsom W. K., Gilmour K. M., Perry S. F., Gargaglioni L., Hedrick M., Kinkead R., et al. (2022). Control of breathing in ectothermic vertebrates. Compr. Physiol. 12, 3869–3988. doi:10.1002/cphy.c210041
Milsom W. K. (2012). New insights into gill chemoreception: Receptor distribution and roles in water and air breathing fish. Respir. Physiol. Neurobiol. 184, 326–339. doi:10.1016/j.resp.2012.07.013
Milsom W. K., Reid S. G., Rantin F. T., Sundin L. (2002). Extrabranchial chemoreceptors involved in respiratory reflexes in the neotropical fish Colossoma macropomum (the tambaqui). J. Exp. Biol. 205, 1765–1774. doi:10.1242/jeb.205.12.1765
Olson K. R., Donald J. A., Dombkowski R. A., Perry S. F. (2012). Evolutionary and comparative aspects of nitric oxide, carbon monoxide and hydrogen sulfide. Respir. Physiol. Neurobiol. 184, 117–129. doi:10.1016/j.resp.2012.04.004
Olson K. R., Healy M., Zhaohong Q., Vulesevic B., Duff D. W., Whitfield N., et al. (2008). Hydrogen sulfide as an oxygen sensor in trout gill chemoreceptors. Am. J. Physiol. 295, R669–R680. doi:10.1152/ajpregu.00807.2007
Ortega-Sáenz P., Moreno-Domínguez A., Gao L., López-Barneo J. (2020). Molecular mechanisms of acute oxygen sensing by arterial chemoreceptor cells. Role of Hif2α. Front. Physiol. 11, 614893. doi:10.3389/fphys.2020.614893
Pan W., Godoy R. S., Cook D. P., Scott A. L., Nurse C. A., Jonz M. G. (2022). Single-cell transcriptomic analysis of neuroepithelial cells and other cell types of the gills of zebrafish (Danio rerio) exposed to hypoxia. Sci. Rep. 12, 10144. doi:10.1038/s41598-022-13693-1
Pan W., Scott A. L., Nurse C. A., Jonz M. G. (2021a). Identification of oxygen-sensitive neuroepithelial cells through an endogenous reporter gene in larval and adult transgenic zebrafish. Cell Tissue Res. 384, 35–47. doi:10.1007/s00441-020-03307-5
Pan Y. K., Jensen G., Perry S. F. (2021b). Disruption of tph1 genes demonstrates the importance of serotonin in regulating ventilation in larval zebrafish (Danio rerio). Respir. Physiol. Neurobiol. 285, 103594. doi:10.1016/j.resp.2020.103594
Pan Y. K., Mandic M., Zimmer A. M., Perry S. F. (2019). Evaluating the physiological significance of hypoxic hyperventilation in larval zebrafish (Danio rerio). J. Exp. Biol. 222, jeb204800. doi:10.1242/jeb.204800
Pan Y. K., Perry S. F. (2020). Neuroendocrine control of breathing in fish. Mol. Cell. Endocrinol. 509, 110800. doi:10.1016/j.mce.2020.110800
Peña-Münzenmayer G., Niemeyer M. I., Sepúlveda F. V., Cid L. P. (2013). Zebrafish and mouse TASK-2 K+ channels are inhibited by increased CO2 and intracellular acidification. Pflügers Arch. 466, 1317–1327. doi:10.1007/s00424-013-1365-2
Perry S. F., Abdallah S. J. (2012). Mechanisms and consequences of carbon dioxide sensing in fish. Respir. Physiol. Neurobiol. 184, 309–315. doi:10.1016/j.resp.2012.06.013
Perry S. F., Esbaugh A., Braun M., Gilmour K. M. (2009a). “Gas transport and gill function in water-breathing fish,” in Cardio-respiratory control in vertebrates: Comparative and evolutionary aspects. Editors M. L. Glass, and S. C. Wood (Heidelberg: Springer), 5–42.
Perry S. F., Gilmour K. M. (2010). “Oxygen uptake and transport in water breathers,” in Respiratory Physiology of vertebrates: Life with and without oxygen. Editor G. E. Nilsson (Cambridge: Cambridge University Press), 49–94.
Perry S. F., Gilmour K. M. (2002). Sensing and transfer of respiratory gases at the fish gill. J. Exp. Zool. 293, 249–263. doi:10.1002/jez.10129
Perry S. F., Jonz M. G., Gilmour K. M. (2009b). “Oxygen sensing and the hypoxic ventilatory response,” in Fish Physiology v27 hypoxia. Editors J. G. Richards, C. J. Brauner, and A. P. Farrell (Amsterdam: Academic Press), 193–251.
Perry S. F., Mckendry J. E. (2001). The relative roles of external and internal CO2versus H+ in eliciting the cardiorespiratory responses of Salmo salar and Squalus acanthias to hpercarbia. J. Exp. Biol. 204, 3963–3971. doi:10.1242/jeb.204.22.3963
Perry S. F., Reid S. G. (2002). Cardiorespiratory adjustments during hypercarbia in rainbow trout Oncorhynchus mykiss are initiated by external CO2 receptors on the first gill arch. J. Exp. Biol. 205, 3357–3365. doi:10.1242/jeb.205.21.3357
Perry S. F. (2011). “Respiratory responses to hypoxia in fishes,” in Encyclopaedia of fish Physiology: From genome to environment. Editor A. P. Farrell (San Diego: Elsevier), 1751–1756.
Perry S. F., Tzaneva V. (2016). The sensing of respiratory gases in fish: Mechanisms and signalling pathways. Respir. Physiol. Neurobiol. 224, 71–79. doi:10.1016/j.resp.2015.06.007
Perry S., Kumai Y., Porteus C., Tzaneva V., Kwong R. (2016). An emerging role for gasotransmitters in the control of breathing and ionic regulation in fish. J. Comp. Physiol. B 186, 145–159. doi:10.1007/s00360-015-0949-x
Polymeropoulos E. T., Plouffe D., Leblanc S., Elliott N. G., Currie S., Frappell P. B. (2014). Growth hormone transgenesis and polyploidy increase metabolic rate, alter the cardiorespiratory response and influence HSP expression in response to acute hypoxia in Atlantic salmon (Salmo salar) yolk-sac alevins. J. Exp. Biol. 217, 2268–2276. doi:10.1242/jeb.098913
Porteus C., Abdallah S. J., Pollack J., Kumai Y., Kwong R. W. M., Yew H. M., et al. (2014). The role of hydrogen sulphide in the control of breathing in hypoxic zebrafish (Danio rerio). J. Physiol. 592, 3075–3088. doi:10.1113/jphysiol.2014.271098
Porteus C., Kumai Y., Abdallah S. J., Yew H. M., Kwong R. W. M., Pan Y. K., et al. (2021). Respiratory responses to external ammonia in zebrafish (Danio rerio). Comp. Biochem. Physiol. A 251, 110822. doi:10.1016/j.cbpa.2020.110822
Porteus C. S., Brink D. L., Milsom W. K. (2012). Neurotransmitter profiles in fish gills: Putative gill oxygen chemoreceptors. Respir. Physiol. Neurobiol. 184, 316–325. doi:10.1016/j.resp.2012.06.019
Porteus C. S., Pollack J., Tzaneva V., Kwong R. W. M., Kumai Y., Abdallah S. J., et al. (2015). A role for nitric oxide in the control of breathing in zebrafish (Danio rerio). J. Exp. Biol. 218, 3746–3753. doi:10.1242/jeb.127795
Prabhakar N. R. (2013). Sensing hypoxia: Physiology, genetics and epigenetics. J. Physiol. 591, 2245–2257. doi:10.1113/jphysiol.2012.247759
Qin Z., Lewis J. E., Perry S. F. (2010). Zebrafish (Danio rerio) gill neuroepithelial cells are sensitive chemoreceptors for environmental CO2. J. Physiol. 588, 861–872. doi:10.1113/jphysiol.2009.184739
Ragsdale A., Ortega-Recalde O., Dutoit L., Besson A. A., Chia J. H. Z., King T., et al. (2022). Paternal hypoxia exposure primes offspring for increased hypoxia resistance. BMC Biol. 20, 185. doi:10.1186/s12915-022-01389-x
Rakoczy R. J., Wyatt C. N. (2018). Acute oxygen sensing by the carotid body: A rattlebag of molecular mechanisms. J. Physiol. 596, 2969–2976. doi:10.1113/JP274351
Randall D. J., Ip Y. K. (2006). Ammonia as a respiratory gas in water and air-breathing fishes. Respir. Physiol. Neurobiol. 154, 216–225. doi:10.1016/j.resp.2006.04.003
Randall D. J., Shelton G. (1963). The effects of changes in environmental gas concentrations on the breathing and heart rate of a teleost fish. Comp. Biochem. Physiol. 9, 229–239. doi:10.1016/0010-406x(63)90046-x
Randall D. J. (1982). The control of respiration and circulation in fish during exercise and hypoxia. J. Exp. Biol. 100, 275–288. doi:10.1242/jeb.100.1.275
Rasera M. D. F. L., Krusche A. V., Richey J. E., Ballester M. V. R., Victória R. L. (2013). Spatial and temporal variability of pCO2 and CO2 efflux in seven Amazonian Rivers. Biogeochem 116, 241–259. doi:10.1007/s10533-013-9854-0
Reed M., Jonz M. G. (2022). Neurochemical signalling associated with gill oxygen sensing and ventilation: A receptor focused mini-review. Front. Physiol. 13, 940020. doi:10.3389/fphys.2022.940020
Regan K. S., Jonz M. G., Wright P. A. (2011). Neuroepithelial cells and the hypoxia emersion response in the amphibious fish Kryptolebias marmoratus. J. Exp. Biol. 214, 2560–2568. doi:10.1242/jeb.056333
Reid S. G., Perry S. F., Gilmour K. M., Milsom W. K., Rantin F. T. (2005). Reciprocal modulation of O2 and CO2 cardiorespiratory chemoreflexes in the tambaqui. Respir. Physiol. Neurobiol. 146, 175–194. doi:10.1016/j.resp.2004.12.008
Reid S. G., Sundin L., Kalinin A. L., Rantin F. T., Milsom W. K. (2000). Cardiovascular and respiratory reflexes in the tropical fish, traira (Hoplias malabaricus): CO2/pH chemoresponses. Respir. Physiol. 120, 47–59. doi:10.1016/s0034-5687(99)00100-0
Robertson C. E., Turko A. J., Jonz M. G., Wright P. A. (2015). Hypercapnia and low pH induce neuroepithelial cell proliferation and emersion behaviour in the amphibious fish Kryptolebias marmoratus. J. Exp. Biol. 218, 2987–2990. doi:10.1242/jeb.123133
Rombough P. (2002). Gills are needed for ionoregulation before they are needed for O2 uptake in developing zebrafish, Danio rerio. J. Exp. Biol. 205, 1787–1794. doi:10.1242/jeb.205.12.1787
Rombough P. J. (1988). “Respiratory gas exchange, aerobic metabolism, and effects of hypoxia during early life,” in Fish Physiology vXIA. Editors W. S. Hoar, and D. J. Randall (San Diego: Academic Press), 59–161.
Rombough P. (2007). The functional ontogeny of the teleost gill: Which comes first, gas or ion exchange? Comp. Biochem. Physiol. A 148, 732–742. doi:10.1016/j.cbpa.2007.03.007
Rosales K., Yeh C.-M., How J. J., Villa-Real R., Depasquale E., Groisman A., et al. (2019). Neural pathways linking hypoxia with pectoral fin movements in Danio rerio. bioRxiv, doi:10.1101/655084
Rossi G. S., Cochrane P. V., Wright P. A. (2020). Fluctuating environments during early development can limit adult phenotypic flexibility: Insights from an amphibious fish. J. Exp. Biol. 223, jeb228304. doi:10.1242/jeb.228304
Shakarchi K., Zachar P. C., Jonz M. G. (2013). Serotonergic and cholinergic elements of the hypoxic ventilatory response in developing zebrafish. J. Exp. Biol. 216, 869–880. doi:10.1242/jeb.079657
Sharrock A. V., Mulligan T. S., Hall K. R., Williams E. M., White D. T., Zhang L., et al. (2022). Ntr 2.0: A rationally engineered prodrug-converting enzyme with substantially enhanced efficacy for targeted cell ablation. Nat. Methods 19, 205–215. doi:10.1038/s41592-021-01364-4
Shelton G., Jones D. R., Milsom W. K. (1986). “Control of breathing in ectothermic vertebrates,” in Handbook of Physiology, section 3. The respiratory system. Editors N. S. Cherniak, and J. G. Widdicombe (Bethesda: American Physiological Society), 2, 857–909. Control of Breathing.
Sloman K. A., Mandic M., Todgham A. E., Fangue N. A., Subrt P., Richards J. G. (2008). The response of the tidepool sculpin, Oligocottus maculosus, to hypoxia in laboratory, mesocosm and field environments. Comp. Biochem. Physiol. A 149, 284–292. doi:10.1016/j.cbpa.2008.01.004
Steffensen J. F., Lomholt J. P. (1983). Energetic cost of active branchial ventilation in the sharksucker, Echeneis naucrates. J. Exp. Biol. 103, 185–192. doi:10.1242/jeb.103.1.185
Sundin L., Burleson M. L., Sanchez A. P., Amin-Naves J., Kinkead R., Gargaglioni L. H., et al. (2007). Respiratory chemoreceptor function in vertebrates comparative and evolutionary aspects. Integr. Comp. Biol. 47, 592–600. doi:10.1093/icb/icm076
Sundin L., Reid S. G., Rantin F. T., Milsom W. K. (2000). Branchial receptors and cardiorespiratory reflexes in the neotropical fish, Tambaqui (Colossoma macropomum). J. Exp. Biol. 203, 1225–1239. doi:10.1242/jeb.203.7.1225
Thomsen M. T., Lefevre S., Nilsson G. E., Wang T., Bayley M. (2019). Effects of lactate ions on the cardiorespiratory system in rainbow trout (Oncorhynchus mykiss). Am. J. Physiol. 316, R607–R620. doi:10.1152/ajpregu.00395.2018
Thomsen M. T., Wang T., Milsom W. K., Bayley M. (2017). Lactate provides a strong pH-independent ventilatory signal in the facultative air-breathing teleost Pangasianodon hypophthalmus. Sci. Rep. 7, 6378–6379. doi:10.1038/s41598-017-06745-4
Torres-Torrelo H., Ortega-Sáenz P., Macías D., Omura M., Zhou T., Matsunami H., et al. (2018). The role of Olfr78 in the breathing circuit of mice. Nature 561, E33–E40. doi:10.1038/s41586-018-0545-9
Tresguerres M., Milsom W. K., Perry S. F. (2019). “CO2 and acid-base sensing,” in Fish Physiology v37 carbon dioxide. Editors M. Grosell, P. L. Munday, A. P. Farrell, and C. J. Brauner (USA: Elsevier), 33–68.
Turesson J., Schwerte T., Sundin L. (2006). Late onset of NMDA receptor-mediated ventilatory control during early development in zebrafish (Danio rerio). Comp. Biochem. Physiol. A 143, 332–339. doi:10.1016/j.cbpa.2005.12.008
Tzaneva V., Perry S. F. (2014). Heme oxygenase-1 (HO-1) mediated respiratory responses in the goldfish, Carassius auratus. Resp. Physiol. Neurobiol. 199, 1–8. doi:10.1016/j.resp.2014.04.006
Tzaneva V., Perry S. F. (2016). Role of endogenous carbon monoxide in the control of breathing in zebrafish (Danio rerio). Am. J. Physiol. 311, R1262–R1270. doi:10.1152/ajpregu.00094.2016
Varas R., Wyatt C. N., Buckler K. J. (2007). Modulation of TASK-like background potassium channels in rat arterial chemoreceptor cells by intracellular ATP and other nucleotides. J. Physiol. 583, 521–536. doi:10.1113/jphysiol.2007.135657
Vulesevic B., McNeill B., Perry S. F. (2006). Chemoreceptor plasticity and respiratory acclimation in the zebrafish, Danio rerio. J. Exp. Biol. 209, 1261–1273. doi:10.1242/jeb.02058
Vulesevic B., Perry S. F. (2006). Developmental plasticity of ventilatory control in zebrafish, Danio rerio. Respir. Physiol. Neurobiol. 154, 396–405. doi:10.1016/j.resp.2006.01.001
Wang H., Jing M., Li Y. (2018). Lighting up the brain: Genetically encoded fluorescent sensors for imaging neurotransmitters and neuromodulators. Curr. Opin. Neurobiol. 50, 171–178. doi:10.1016/j.conb.2018.03.010
Weber J.-M., Kramer D. L. (1983). Effects of hypoxia and surface access on growth, mortality, and behavior of juvenile guppies, Poecilia reticulata. Can. J. Fish. Aquat. Sci. 40, 1583–1588. doi:10.1139/f83-183
White R. M., Sessa A., Burke C., Bowman T., Leblanc J., Ceol C., et al. (2008). Transparent adult zebrafish as a tool for in vivo transplantation analysis. Cell Stem Cell 2, 183–189. doi:10.1016/j.stem.2007.11.002
Wood C. M., Jackson E. B. (1980). Blood acid-base regulation during environmental hyperoxia in the rainbow trout (Salmo gairdneri). Respir. Physiol. 42, 351–372. doi:10.1016/0034-5687(80)90125-5
Wood C. M., Munger R. S. (1994). Carbonic anhydrase injection provides evidence for the role of blood acid-base status in stimulating ventilation after exhaustive exercise in rainbow trout. J. Exp. Biol. 194, 225–253. doi:10.1242/jeb.194.1.225
Wyatt C. N., Buckler K. J. (2004). The effect of mitochondrial inhibitors on membrane currents in isolated neonatal rat carotid body type I cells. J. Physiol. 556, 175–191. doi:10.1113/jphysiol.2003.058131
Yuan G., Vasavda C., Peng Y.-J., Makarenko V. V., Raghuraman G., Nanduri J., et al. (2015). Protein kinase G–regulated production of H2S governs oxygen sensing. Sci. Signal. 8, ra37. doi:10.1126/scisignal.2005846
Zaccone G., Lauriano E. R., Kuciel M., Capillo G., Pergolizzi S., Alesci A., et al. (2017). Identification and distribution of neuronal nitric oxide synthase and neurochemical markers in the neuroepithelial cells of the gill and the skin in the giant mudskipper, Periophthalmodon schlosseri. Periophthalmodon Schlosseri. Zool. 125, 41–52. doi:10.1016/j.zool.2017.08.002
Zachar P. C., Jonz M. G. (2012). Neuroepithelial cells of the gill and their role in oxygen sensing. Respir. Physiol. Neurobiol. 184, 301–308. doi:10.1016/j.resp.2012.06.024
Zachar P. C., Pan W., Jonz M. G. (2017). Characterization of ion channels and O2 sensitivity in gill neuroepithelial cells of the anoxia-tolerant goldfish (Carassius auratus). J. Neurophysiol. 118, 3014–3023. doi:10.1152/jn.00237.2017
Zhang L., Nawata C. M., Wood C. M. (2013). Sensitivity of ventilation and brain metabolism to ammonia exposure in rainbow trout, Oncorhynchus mykiss. J. Exp. Biol. 216, 4025–4037. doi:10.1242/jeb.087692
Zhang L., Nawata M., De Boeck G., Wood C. M. (2015). Rh protein expression in branchial neuroepithelial cells, and the role of ammonia in ventilatory control in fish. Comp. Biochem. Physiol. 186A, 39–51. doi:10.1016/j.cbpa.2014.10.004
Zhang L., Nurse C. A., Jonz M. G., Wood C. M. (2011). Ammonia sensing by neuroepithelial cells and ventilatory responses to ammonia in rainbow trout. J. Exp. Biol. 214, 2678–2689. doi:10.1242/jeb.055541
Zhang L., Wood C. M. (2009). Ammonia as a stimulant to ventilation in rainbow trout Oncorhynchus mykiss. Respir. Physiol. Neurobiol. 168, 261–271. doi:10.1016/j.resp.2009.07.011
Zimmer A. M., Mandic M., Rourke K. M., Perry S. F. (2020). Breathing with fins: Do the pectoral fins of larval fishes play a respiratory role? Am. J. Physiol. 318, R89–R97. doi:10.1152/ajpregu.00265.2019
Zimmer A. M., Pan Y. K., Chandrapalan T., Kwong R. W. M., Perry S. F. (2019). Loss-of-function approaches in comparative physiology: Is there a future for knockdown experiments in the era of genome editing? J. Exp. Biol. 222, jeb175737. doi:10.1242/jeb.175737
Keywords: gill, ventilation, chemoreceptor, zebrafish, Danio rerio, ontogeny
Citation: Perry SF, Pan YK and Gilmour KM (2023) Insights into the control and consequences of breathing adjustments in fishes-from larvae to adults . Front. Physiol. 14:1065573. doi: 10.3389/fphys.2023.1065573
Received: 09 October 2022; Accepted: 11 January 2023;
Published: 30 January 2023.
Edited by:
Pung Pung Hwang, Academia Sinica, TaiwanReviewed by:
Hui-Chen Lin, Tunghai University, TaiwanBill Milsom, University of British Columbia, Canada
Copyright © 2023 Perry, Pan and Gilmour. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Steve F. Perry, sfperry@uottawa.ca