Achille Iolascon
Roberta Russo
Immacolata Andolfo- 1Dipartimento di Medicina Molecolare e Biotecnologie Mediche, Università di Napoli Federico II, Naples, Italy
- 2CEINGE Biotecnologie Avanzate, Naples, Italy
Editorial on the Research Topic
Genetics and Genomics of Red Blood Cells
The current Research Topic focused on the implementation of next-generation sequencing (NGS) applications in the field of genetics, genomics, and transcriptomics of red blood cell defects. This is an important issue in the current scientific scenario either in the clinical/diagnostic or in research settings. Indeed, the widespread use of these technologies has already modified the approaches to diagnosis and research for red blood cell disorders (Russo et al., 2020).
In their review, Achour et al. discussed the role of NGS in both screening and pre- and post-natal diagnostics of the hemoglobinopathies. Based on the analysis of literature data, they concluded that NGS has an added value in large-scale high throughput carrier screening and in the complex cases that are often missed using the traditional approach. Most of thalassemias and hemoglobinopathies can be diagnosed using routine analysis that include a combined approach based on the evaluation of complete blood count, hemoglobin separation, and first-generation DNA sequencing (Taher et al., 2021). Nevertheless, Achour et al. concluded that NGS-based technology is not likely to replace existing methods but can be a useful additional tool in the diagnostic strategy of these conditions. This is mainly true for large-scale genetic screening, in the discovery of novel pathogenic mechanisms, in a better understanding of the erythroid-specific beta-gene regulation of expression, and in an improved establishment of genotype-phenotype correlation.
One of the major advantages of the NGS approach is the identification of both the polygenic conditions and the modifier variants associated with causative mutations (Andolfo et al., 2021). Several NGS-based studies identified genetic polymorphisms as phenotype modifiers with a mild effect on disease expression under a “multifactorial-like” model. Indeed, under this model, the disease expression depends on the effects of several genetic variants located in different modifier genes that, by themselves, only explain a small proportion of the variability but interact both with one another and with environmental factors (Rund and Fucharoen, 2008; Andolfo et al., 2018, 2019).
In their study, Lionetti et al. investigated eight clinically relevant single nucleotide polymorphisms (SNPs) within NR3C1 gene, encoding the glucocorticoid receptor, in patients with Diamond Blackfan Anemia (DBA) (Da Costa et al., 2020). NR3C1 is a highly polymorphic locus harboring numerous SNPs associated with variability of manifestation and/or response to glucocorticoids in human diseases. Of note, ~60–80% of DBA patients improve anemia and became transfusion independent upon treatment with glucocorticoids. Two out eight SNPs of NR3C1 regulatory regions, rs6196 and rs860457, were enriched in patients manifesting the disease before 4 months of age, suggesting that these variants may regulate the response of erythroid cells to glucocorticoids during ontogeny. This hypothesis was supported by phosphoproteomic profiling of erythroid cells expanded ex vivo indicating that glucocorticoids activate a ribosomal signature in cells from cord blood but not in those from adult blood.
From the research perspective, the use of NGS applications allowed both identifying new causative genes associated to red blood cell defects as well as understanding the pathogenic mechanisms underlying these disorders. Within this Research Topic, the study by Karaosmanoglu et al. investigated the transcriptomic profile of three different cell types of bone marrow resident cells isolated from patients affected by DBA related to RPS19 and CECR1 mutations. The authors observed increased expression of genes associated with both cellular stress and immune response. Interestingly, they also suggested that the gene expression profile reflecting cellular stress and cytokine response in proerythroblasts may be associated with increased inflammation in the bone marrow niche. This observation agrees with previous studies suggesting a specific contribution of TNF-α in the inhibition of erythroid differentiation and in the pathogenesis of ribosomal stress observed in DBA.
The importance and the advantages of NGS are easily understandable. However, despite the extensive employment of this technique in routine laboratory practice, some considerations on its limitations and/or disadvantages should be done. A major limitation of NGS genome analysis remains the data processing steps and the assessment of the pathogenicity of identified genetic variants (Lincoln et al., 2021). This latter may be improved by generating engineered cellular or animal models to study the pathogenesis of the diseases.
The study by Noy-Lotan et al. investigated the role of Codanin-1 in erythropoiesis. Codanin-1 is the protein product of CDAN1, the main causative gene of congenital dyserythropoietic anemia type I (CDA I) (Roy and Babbs, 2019; Iolascon et al., 2020). Codanin-1 is a cell-cycle regulated protein with high similarity to CNOT1, a conserved protein that serves as a scaffold for proteins involved in mRNA stability and transcriptional control (Swickley et al., 2020). Although different studies have clarified some biological function of Codanin-1, its cellular functions and the erythroid specificity of the phenotype remain elusive. To shed more light on the specific role of Codanin-1 in erythropoiesis, and to circumvent the early fatality caused by a complete knockout of Cdan1, the authors generated a Cdan1 erythroid conditional knockout mouse model by crossing Cdan1flox/flox mice with a transgenic mouse strain that expresses the Cre-recombinase under regulation of the endogenous erythropoietin receptor promoter. The resulting CdanΔEry mice die in-utero at mid-gestation from severe anemia with very low numbers of circulating erythroblast. Of note CdanΔEry model displays severe aberrations of primitive erythropoiesis and erythroblasts exhibit the pathognomonic morphological features described in individuals with CDA I, suggesting that CDAN1 is required for primitive erythropoiesis.
This collection of articles related to the study of genetics, genomics, and transcriptomics of red blood cell defect highlighted the actual and future direction of the diagnosis and research in this field. Although these conditions are rare, the study of their pathogenetic mechanism could shed light on new mechanisms that can be shared with other conditions affecting larger populations.
Author Contributions
AI, RR, and IA wrote the manuscript. All authors contributed to the article and approved the submitted version.
Conflict of Interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
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References
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Andolfo, I., Martone, S., Rosato, B. E., Marra, R., Gambale, A., Forni, G. L., et al. (2021). Complex modes of inheritance in hereditary red blood cell disorders: a case series study of 155 patients. Genes (Basel) 12:958. doi: 10.3390/genes12070958
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Lincoln, S. E., Hambuch, T., Zook, J. M., Bristow, S. L., Hatchell, K., Truty, R., et al. (2021). One in seven pathogenic variants can be challenging to detect by NGS: an analysis of 450,000 patients with implications for clinical sensitivity and genetic test implementation. Genet. Med. 23, 1673–1680. doi: 10.1038/s41436-021-01187-w
Roy, N. B. A., and Babbs, C. (2019). The pathogenesis, diagnosis and management of congenital dyserythropoietic anaemia type I. Br. J. Haematol. 185, 436–449. doi: 10.1111/bjh.15817
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Keywords: hereditary anemias, next-generation sequencing, transcriptomics, genetic diagnosis, genetic variants, transgenic animal model
Citation: Iolascon A, Russo R and Andolfo I (2022) Editorial: Genetics and Genomics of Red Blood Cells. Front. Physiol. 12:822156. doi: 10.3389/fphys.2021.822156
Received: 25 November 2021; Accepted: 16 December 2021;
Published: 07 January 2022.
Edited and reviewed by: Anna Bogdanova, University of Zurich, Switzerland
Copyright © 2022 Iolascon, Russo and Andolfo. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Achille Iolascon, achille.iolascon@unina.it